genome.fa.s13765.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013765.1 Kokia drynarioides strain JFW-HI SEQ_128793, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  151254

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5945--5994	23	2.1	25	88	7	77	28	24	12	36	1.91
9914--9969	28	2.0	29	89	3	87	42	1	3	51	1.29
16082--16137	17	3.0	20	82	15	82	37	7	12	42	1.70
16887--16946	22	2.7	23	75	14	63	50	3	5	41	1.41
23472--23504	16	1.9	18	88	11	52	63	0	0	36	0.95
24837--24879	22	2.0	22	81	9	52	60	4	2	32	1.30
31674--31821	74	2.0	74	98	0	287	38	16	10	35	1.82
31982--32082	17	5.9	17	79	5	107	37	3	3	54	1.38
31999--32089	6	15.7	6	70	15	57	38	3	4	53	1.37
31979--32082	34	3.1	34	87	8	142	37	3	3	54	1.37
32938--33242	29	10.6	28	75	11	156	34	27	3	34	1.73
32964--33213	29	8.8	28	77	13	158	34	27	2	35	1.72
32943--33213	57	4.7	56	75	12	178	35	27	2	34	1.72
33139--33219	28	2.8	29	83	5	103	33	29	3	33	1.75
32938--33242	58	5.3	56	72	16	184	34	27	3	34	1.73
34980--35104	44	2.9	42	78	5	124	44	14	24	16	1.84
35773--36733	198	4.8	198	81	4	1026	33	18	32	15	1.92
35773--36732	99	9.7	99	76	6	802	33	18	32	15	1.92
37151--37219	34	2.0	34	86	5	95	36	5	4	53	1.45
37151--37219	17	4.1	17	78	0	75	36	5	4	53	1.45
38949--39035	30	3.0	28	77	9	84	33	27	4	34	1.77
39013--39206	29	6.8	28	79	8	169	35	26	2	36	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39019--39206	57	3.3	56	77	9	175	35	26	2	36	1.68
39013--39206	86	2.2	87	82	8	227	35	26	2	36	1.68
39137--39226	28	3.1	29	85	3	92	38	27	1	32	1.64
44030--44138	49	2.2	51	91	4	179	44	7	6	41	1.58
73053--73110	24	2.5	22	78	13	62	60	3	0	36	1.14
73059--73106	24	2.0	24	87	4	69	56	2	0	41	1.11
73222--73252	16	1.9	16	93	0	53	35	6	9	48	1.62
75427--75451	12	2.1	12	100	0	50	60	24	0	16	1.36
75633--76068	195	2.2	195	83	3	547	27	25	17	29	1.98
76548--76579	16	2.0	16	93	0	55	25	18	3	53	1.59
79102--79155	20	2.7	20	85	0	63	38	11	22	27	1.88
96810--96869	25	2.4	25	83	11	77	50	3	0	46	1.18
97287--97331	20	2.3	20	81	14	58	51	11	0	37	1.38
99554--99630	29	2.7	29	89	0	109	22	28	27	22	1.99
103958--104013	4	14.0	4	88	0	67	25	8	25	41	1.84
103960--104013	12	4.5	12	90	0	81	25	9	24	40	1.85
104707--104743	2	18.5	2	100	0	74	48	0	0	51	1.00
110240--110284	4	11.2	4	80	0	54	24	6	24	44	1.77
118321--118369	12	4.1	12	78	0	53	65	20	8	6	1.41
118310--118369	24	2.5	24	78	5	59	66	20	6	6	1.38
118340--118405	21	3.0	20	70	18	51	65	18	7	9	1.45
118339--118477	75	1.9	75	85	0	197	66	16	7	9	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118440--118521	21	3.8	21	74	9	58	63	23	7	6	1.43
122100--122137	19	2.0	19	85	10	51	55	5	2	36	1.37
131031--131097	30	2.2	31	86	2	91	29	16	10	43	1.81
130961--131143	89	2.0	90	84	5	237	24	15	12	47	1.80
138522--138632	39	2.8	39	82	2	125	24	17	21	36	1.94
138738--138941	72	2.8	72	81	7	209	23	28	17	30	1.97
138731--138953	73	3.1	72	81	7	222	23	29	17	29	1.97
138824--138975	73	2.1	72	80	6	164	23	29	17	28	1.97
142364--142388	7	3.6	7	100	0	50	84	0	0	16	0.63

Tables:   1

The End!