genome.fa.s13767.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013767.1 Kokia drynarioides strain JFW-HI SEQ_128795, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  205168

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173--221	3	16.0	3	87	4	71	61	0	0	38	0.96
453--491	19	2.1	19	85	9	53	53	2	38	5	1.37
1143--1284	29	4.9	29	72	8	101	28	25	4	40	1.76
1159--1343	29	6.3	29	69	16	116	27	25	4	42	1.75
1160--1472	58	5.4	57	72	10	181	29	25	6	38	1.80
1179--1472	117	2.5	116	79	3	288	30	24	6	38	1.80
1323--1472	57	2.6	58	80	5	169	33	26	6	34	1.82
3665--3947	30	9.7	29	74	14	194	35	2	25	36	1.70
3666--3922	59	4.4	58	76	9	218	36	2	25	36	1.69
5452--5502	17	2.9	18	80	5	61	52	13	1	31	1.51
5906--6685	209	3.7	208	85	2	929	23	22	17	37	1.94
18768--19231	29	15.9	29	71	14	228	37	3	23	35	1.71
18768--19255	117	4.2	116	75	10	338	37	3	23	35	1.71
18768--19228	58	7.9	58	73	10	334	37	3	23	35	1.71
21096--21134	17	2.3	17	86	0	51	61	2	2	33	1.23
23978--24029	26	2.0	26	96	0	95	34	13	15	36	1.87
28471--28529	27	2.2	27	79	11	68	27	5	18	49	1.68
37475--37527	19	2.9	18	83	10	63	64	5	3	26	1.33
42318--42367	25	1.9	25	84	8	64	78	2	4	16	1.00
46499--46544	24	1.9	24	82	8	58	56	6	4	32	1.45
55803--55994	28	6.9	28	80	4	149	33	23	17	25	1.96
63511--63579	21	3.3	20	83	6	75	4	5	23	66	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64994--65050	20	2.9	18	76	16	60	61	1	1	35	1.17
65039--65070	8	4.1	8	96	4	57	62	0	0	37	0.95
69903--69931	9	3.3	9	90	9	51	31	0	34	34	1.58
72400--72483	39	2.2	39	95	0	150	19	27	28	25	1.98
72516--72636	63	1.9	62	81	5	145	26	28	26	19	1.98
72969--73002	16	2.1	17	88	5	52	55	2	32	8	1.45
75369--75487	57	2.1	57	100	0	238	29	15	36	19	1.92
77242--77266	6	4.2	6	100	0	50	32	32	20	16	1.94
77557--77637	28	2.9	27	83	3	90	35	23	20	19	1.96
78050--78158	11	9.3	12	72	16	86	45	1	1	50	1.23
78050--78158	6	18.7	6	72	16	86	45	1	1	50	1.23
78071--78156	17	4.9	17	83	8	102	43	1	2	53	1.21
79941--80309	30	12.5	29	77	9	311	36	29	1	31	1.68
79941--80319	59	6.4	59	85	4	505	36	29	1	32	1.68
79937--80319	29	13.0	29	78	9	377	35	29	1	32	1.68
80630--80722	46	2.1	44	93	4	159	37	17	13	31	1.89
85386--85413	14	2.0	14	100	0	56	35	7	14	42	1.73
89255--89297	15	2.9	15	96	0	77	30	30	13	25	1.94
89660--89733	38	1.9	38	94	0	130	28	22	27	21	1.99
89727--89772	18	2.6	18	82	0	56	30	28	30	10	1.91
89819--89879	28	2.2	28	85	5	79	29	9	31	29	1.89
91192--91218	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108080--108146	34	2.0	34	96	0	125	20	4	25	49	1.68
112712--112805	49	1.9	48	95	2	170	42	4	10	42	1.59
113011--113073	26	2.4	26	83	0	81	46	6	0	47	1.28
113677--113939	98	2.6	98	78	3	283	31	17	18	31	1.94
113885--113976	37	2.5	37	83	0	112	36	20	16	26	1.93
119066--119117	27	2.0	26	84	3	68	44	11	1	42	1.51
120133--120631	157	3.3	151	81	8	473	42	8	3	45	1.52
121102--121138	3	12.3	3	94	0	65	64	2	0	32	1.07
130058--130105	6	8.0	6	90	0	69	27	33	6	33	1.82
142795--142830	17	2.1	17	90	10	56	77	2	19	0	0.88
153774--153820	23	2.0	23	95	0	85	31	12	25	29	1.93
159102--159140	16	2.4	16	87	8	53	66	0	15	17	1.25
159902--159946	23	1.9	24	82	13	58	64	17	8	8	1.47
166742--166775	10	3.4	10	84	15	52	41	0	0	58	0.98
170536--170567	15	2.0	17	88	11	50	37	6	12	43	1.68
171653--171727	14	5.5	14	71	14	50	22	2	33	41	1.68
185747--185819	34	2.1	34	92	0	128	28	16	1	53	1.51
192389--192429	2	21.0	2	90	5	66	46	0	0	53	1.00
194039--194233	31	6.4	31	76	18	160	25	16	10	46	1.80
194071--194242	60	2.9	59	92	3	274	25	16	11	46	1.80
198358--198421	31	2.1	31	100	0	128	42	3	35	18	1.66

Tables:   1

The End!