Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013772.1 Kokia drynarioides strain JFW-HI SEQ_128800, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 322742
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
Warning! 107 characters in sequence are not A, C, G, or T
File 2 of 2
Found at i:269182 original size:30 final size:30
Alignment explanation
Indices: 269141--269201 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
269131 GTGAAAGATA
*
269141 GAAACGACAGAAGAATAATTACCTGGCCTT
1 GAAACGACAGAAGAAGAATTACCTGGCCTT
*
269171 GAAATGACAGAAGAAGAATTACCTGGCCTT
1 GAAACGACAGAAGAAGAATTACCTGGCCTT
269201 G
1 G
269202 TGCCAAAGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (30 bp):
GAAACGACAGAAGAAGAATTACCTGGCCTT
Found at i:269455 original size:36 final size:35
Alignment explanation
Indices: 269408--269508 Score: 123
Period size: 36 Copynumber: 2.8 Consensus size: 35
269398 GGTAACAAGC
*
269408 ATGACCTTTGGGTCAATAGGGAG-AAACATGAACATA
1 ATGACCTTTGGGTCAACAGGGAGAAAACA--AACATA
* *
269444 ATGACCTTTGGGTCAACAGGGAGTAAAACAAGCATC
1 ATGACCTTTGGGTCAACAGGGAG-AAAACAAACATA
*
269480 ATGACCTTTAGGTCAACAGGGAGTAAAAC
1 ATGACCTTTGGGTCAACAGGGAG-AAAAC
269509 GAATAACGAT
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
36 54 0.92
38 5 0.08
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.21
Consensus pattern (35 bp):
ATGACCTTTGGGTCAACAGGGAGAAAACAAACATA
Found at i:275910 original size:32 final size:32
Alignment explanation
Indices: 275871--275945 Score: 123
Period size: 32 Copynumber: 2.3 Consensus size: 32
275861 TATGTTATTT
* *
275871 TTTTAAGACTTGTAATTTTAGGACAATTTTGG
1 TTTTAAGACTTGCAATTTTAGGAAAATTTTGG
*
275903 TTTTAAGACTTGCAATTTTAGGAAAATTTTTG
1 TTTTAAGACTTGCAATTTTAGGAAAATTTTGG
275935 TTTTAAGACTT
1 TTTTAAGACTT
275946 TTTTTTAATT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.29, C:0.07, G:0.16, T:0.48
Consensus pattern (32 bp):
TTTTAAGACTTGCAATTTTAGGAAAATTTTGG
Found at i:279431 original size:229 final size:229
Alignment explanation
Indices: 279030--279714 Score: 1181
Period size: 229 Copynumber: 3.0 Consensus size: 229
279020 GTATAATAGG
* * * *
279030 TTGATTGTATATTTTGATAAATTTAGCATGATGCTGAGGAATTTTTGAATTTTGTAGAATGAAAC
1 TTGATTGTATTTTTTGATAAATTTAGCATGATGATGAGAAATTTTTGAATTTTGTAGCATGAAAC
* *
279095 TATTAAGTTTTATAGGTTACACTAAGTATAGATAGAAAGGTATTGTTGATACCAAATGATGTGAA
66 TATTAAGTTCTATAGGTTACATTAAGTATAGATAGAAAGGTATTGTTGATACCAAATGATGTGAA
* **
279160 TGATATGAGGAAGTGGTCAATATAACTGTTATGACATAGAGCTCCCTATGTCGTGACGAAGTGGT
131 TGACATGAGGAAGTGGTCAATATAACTGTTGCGACATAGAGCTCCCTATGTCGTGACGAAGTGGT
* *
279225 CAATATCATTGTTGCTCAATTGCTAATAGTCTCC
196 CAATATCACTGTTGCTCAGTTGCTAATAGTCTCC
*
279259 TTGATTGTATTTTTTGATAAATTTAGCATGATGATGAGAAATTTTTGAATTTTGTAGCATGAAAA
1 TTGATTGTATTTTTTGATAAATTTAGCATGATGATGAGAAATTTTTGAATTTTGTAGCATGAAAC
*
279324 TATTAAGTTCTATAGGTTACATTAAGTATAGATAGAAAGGTATTGTTGATACCAAATAATGTGAA
66 TATTAAGTTCTATAGGTTACATTAAGTATAGATAGAAAGGTATTGTTGATACCAAATGATGTGAA
279389 TGACATGAGGAAGTGGTCAATATAACTGTTGCGACATAGAGCTCCCTATGTCGTGACGAAGTGGT
131 TGACATGAGGAAGTGGTCAATATAACTGTTGCGACATAGAGCTCCCTATGTCGTGACGAAGTGGT
* *
279454 CAATATCACTGTTGCTTAGTCGCTAATAGTCTCC
196 CAATATCACTGTTGCTCAGTTGCTAATAGTCTCC
* * *
279488 TTGATTGTATTTTTTGATATATTTTGCATGATGATGAGAAATTTTTGAATTTTGTTGCATGAAAC
1 TTGATTGTATTTTTTGATAAATTTAGCATGATGATGAGAAATTTTTGAATTTTGTAGCATGAAAC
279553 TATTAAGTTCTATAGGTTACATTAAGTATAGATAGAAAGGTATTGTTGATACCAAATGATGTGAA
66 TATTAAGTTCTATAGGTTACATTAAGTATAGATAGAAAGGTATTGTTGATACCAAATGATGTGAA
* *
279618 TGACATTAGGAAGTGGTCAATATAACTGTTGCGACATAGAGCTCCCTATGTCGTGATGAAGTGGT
131 TGACATGAGGAAGTGGTCAATATAACTGTTGCGACATAGAGCTCCCTATGTCGTGACGAAGTGGT
*
279683 CAATATCACTATTGCTCAGTTGCTAATAGTCT
196 CAATATCACTGTTGCTCAGTTGCTAATAGTCT
279715 TTTGTGTACT
Statistics
Matches: 431, Mismatches: 25, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
229 431 1.00
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.36
Consensus pattern (229 bp):
TTGATTGTATTTTTTGATAAATTTAGCATGATGATGAGAAATTTTTGAATTTTGTAGCATGAAAC
TATTAAGTTCTATAGGTTACATTAAGTATAGATAGAAAGGTATTGTTGATACCAAATGATGTGAA
TGACATGAGGAAGTGGTCAATATAACTGTTGCGACATAGAGCTCCCTATGTCGTGACGAAGTGGT
CAATATCACTGTTGCTCAGTTGCTAATAGTCTCC
Found at i:279977 original size:16 final size:16
Alignment explanation
Indices: 279956--279986 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
279946 GCTCACTTAT
279956 CTTTCTTTTTTATTTC
1 CTTTCTTTTTTATTTC
279972 CTTTCTTTTTTATTT
1 CTTTCTTTTTTATTT
279987 GATTTTAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.06, C:0.16, G:0.00, T:0.77
Consensus pattern (16 bp):
CTTTCTTTTTTATTTC
Found at i:280733 original size:216 final size:215
Alignment explanation
Indices: 280192--294961 Score: 16480
Period size: 216 Copynumber: 68.6 Consensus size: 215
280182 TGTTGCATTA
* *
280192 TTGGTCTTTGAATTAAAGACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTATTGGACGAA-TC
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-
* * *
280256 TACGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT
65 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGAT
* * * *
280321 GCAATCATTCGAGCAATTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG
130 CCAATCCTTCGAGCAATTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
* *
280386 TTTGTCATCTT-TAAACAAGTT
194 TTTTTCATTTTGTAAACAAGTT
*
280407 TTGGTCTTTGAATTAAAAA-TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTCGACGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * *
280471 CCGACCTTGTCAAACTTTTATGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGATGATC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* ** * *
280536 CAATCTTTTAAGCAATCTTTCGAACATTCCATGCTCGAGAAATCGCATCAATTGGACTAAATAGT
131 CAATCCTTCGAGCAAT-TTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
280601 TTTTCATTTTGTAAACAAGTT
195 TTTTCATTTTGTAAACAAGTT
* * * * * *
280622 TTGGTCCTTGAATTAAAAACTTATTTACATGAGAATTATTTGTCTCTTGGTTCTTAGACAAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
*
280687 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAATTTCGGTTCCTTAAAGTATTCAAGATGATC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* * * *
280752 CATTCCTTCGAGCAATTTTCCAAACATTCCATGCTCAAGAAATCACATCATTTGGTCTAAATAGT
131 CAATCCTTCGAGCAATTTT-CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
* *
280817 TTTCCTTTTTGTAAACAAGTT
195 TTTTCATTTTGTAAACAAGTT
* * * * *
280838 TTGGTCTTTGAATTAAAAACTTATTTACTTGAGAATTTTTTCTCTCTTAGTTCATAGACGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * ** * * ** *
280903 CCGAACTTGCCAAACTTTTACGAGTTC--TT-TCACTTCTATTCGTTAAAATATTCAAGACAATT
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* * * *
280965 CAATCATTCGAGCAATTTTCCGAACATTCCATGCTTGAGAAATCGCATCATTTGGTCAAAATAAT
131 CAATCCTTCGAGCAATTTT-CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
**
281030 TTGCCATTTTGTAAACAAGTT
195 TTTTCATTTTGTAAACAAGTT
* * *
281051 TTGGTCTTTGATTTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * *
281116 CCGAAATTTTCACACTTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGT-TATCAAGATGAT
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTAT-TCAAGATGAT
* * * * *
281180 CCAATCCTTCGACCAATTTTCCTAACATTTCATGCTCGGGAAATCGCATCATTTGGTCCAAATAG
130 CCAATCCTTCGAGCAATTTT-CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
*
281245 TTTGTCATTTTGTAAACAAGTT
194 TTTTTCATTTTGTAAACAAGTT
* * * * * *
281267 TTGGTCCTTGAAATAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTCGATGAACTG
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
** * * *
281332 CTTAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* * * * *
281397 CATTCCTTCGAGAAATTTTCTGAACATTTCATGCTCGGGAAATCGAATCATTTGGTCTAAATAG-
131 CAATCCTTCGAGCAATTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
*
281461 TTTACATTTTGTAAACAAGTT
195 TTTTCATTTTGTAAACAAGTT
* *
281482 TTGGTCTTTGAATTAAAAAATTATTTACGTGAGAATTGTTTCTCTCTTGGTTCATGGACGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * * * * * *
281547 CTGAACTTGCCAAACTATTACAAGTTCTTTTAAAACATCTGTTCCATAAAGTATTCAAGATGATC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* * * *
281612 CAATCCTTTGAGCAATTTTTTGAACATTCCGTGCTCAAGAAATCGCATCATTTGGTCTAAATAGT
131 CAATCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
* * *
281677 TTGTCATTTTGTCAAGAAGTT
195 TTTTCATTTTGTAAACAAGTT
* * * *
281698 TTGGTCTTTGAATTTAAAACTTATTTACGTGA-ATATTGTTTCCCTCTTGGTTCGTGGATGAACT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGA-ATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * *
281762 TTCAAACTTGTCAAACTTTTACGAGTTCTTTCATAACTTTGGTTCGTTAAAATATTCAAGATGAT
65 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGAT
* * *** * * *
281827 CCAATCATTCGAGCAATTTTTTGAACATGAGATGCTCAAGAAATCGCATCGTTTGGTTTAAATAG
130 CCAATCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
* **
281892 TTTGTCATTTTGTAAACTTGTT
194 TTTTTCATTTTGTAAACAAGTT
*
281914 TTGGTCTTTGAATTAAAAACTTATTTACAG-GAGAATTGTTTCTCTCATGGTTCTTGGACGAACT
1 TTGGTCTTTGAATTAAAAACTTATTTAC-GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * ***
281978 TTCAAACCTGTCAAACTTTTACGAGTTCTTTCATAAC-T---TTCGTTAAAGTATTCAAGGCAAT
65 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGAT
* * * *
282039 CTAATCATTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCAAAATAG
130 CCAATCCTTCGAGCAATTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
* *
282104 TTTGTCATTTTGTAAATAAGTT
194 TTTTTCATTTTGTAAACAAGTT
* * * * *
282126 TTGGTCTTTGAATTAAAAA-TTATTTACGTGAGAATTGTTTCCCTCTTAGTTATCGGATGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
*
282190 CCGAACTTGTTAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* ** * * *
282255 CACTCCTTCGAATAAATTTTCGAGCATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAG-
131 CAATCCTTCG-AGCAATTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
282319 TTTTCATTTTGTAAACAAGTT
195 TTTTCATTTTGTAAACAAGTT
* * ** *
282340 TTGGTCCTTAAATTAAAAACTTATTTGTGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* *
282405 CCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAACTTGGGTTCCTTAAAGTATTCAAGATGATC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* * *
282470 CATTCCGTCGAGCAA-TTTCTAAACATTCCATGCTCCGA-AAATCGCATCATTTGGTCTAAATA-
131 CAATCCTTCGAGCAATTTTC-GAACATTCCATGCT-CGAGAAATCGCATCATTTGGTCTAAATAG
* * * *
282532 TATTATAATGTTGTAAAGAAGTT
194 T-TTTTCATTTTGTAAACAAGTT
* *
282555 TTGGTCTTTGAATTAAAAATTTATATACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-T
* * * * *
282620 T-TGACCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCGTTAAAGTATTCAAGATGTT
65 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGAT
* * * * *
282684 CTAATCCTTCGAGTAATTTTCCAAACATTCCATGCTCGGGAAATCGCATCAGTTGGTCTAAATAG
130 CCAATCCTTCGAGCAATTTT-CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
* * *
282749 TTTGTCATTATGCAAACAAGTT
194 TTTTTCATTTTGTAAACAAGTT
* * *** * * * * * *
282771 TTAGTCCTTGTGGTAAAAACCTATTTTCGTGAGAATTTTTTGTCTCTTGGTTCTTGGACAAAATT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * * * *
282836 CCGAACATGTCAAACTTTTACAAGTTCATTTATAACTTTGGTTTCTTAAAGTATTCAAGACGATC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* * * * * * * *
282901 CATTCCTTCAAGTAATTTTTCGAACATTCCATTCTCGGGAAATCACATCA-TTGCGTCAAAATAA
131 CAATCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTG-GTCTAAATAG
*
282965 TTTTTCATTTTGAAAACAAGTT
194 TTTTTCATTTTGTAAACAAGTT
* * * * *
282987 TTGGTCTTTGAACTAAAAACTTATTTACGTGAAAATTGTTTCTCTATTGGTTCGTCGACGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * * * *
283052 TCGAACTTGTCAAACTTTTACGAGTTCTTTCACAACTTTGGTTCGTTAAAGTATTCAAGATGATT
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* * * * * * *
283117 CAATCATTCAACCAAATTTCCGAACATTCCATGCTCGGGAAATCGAATCATTTGGTCAAAATAGT
131 CAATCCTTCGAGC-AATTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
283182 TTTTCATTTTGTAAACAAGTT
195 TTTTCATTTTGTAAACAAGTT
* * ** *
283203 TTGGTATTTTAATTAAAAACTTATTTTTGTGAGAATTGTTTCTCTCTTGGTT-TGTGGAAGAACT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGGACGAACT
* * * * * * *
283267 TTCAAACTTCTCAAACTTTTACGAGTTCTTTCT-TAACTCCAGTTCGTTACAGTATTCAAGATGA
65 TCCGAACTTGTCAAACTTTTACGAGTTCTTT-TATAACTTCGGTTCCTTAAAGTATTCAAGATGA
* * * * * * * **
283331 TCCAAACATTCGAACAATTTTTCAAACATTCCATGCTCAAGAAATCACATTATTTGGTGAAAATA
129 TCCAATCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATA
*
283396 GTTTTTCATTTAGTAAACAAGTT
193 GTTTTTCATTTTGTAAACAAGTT
*** * * * ** * * * *
283419 TTTAACTTTAAATTAAAATCTGATTTACGTGA-AATTGTTTCTCTCTTTTTTGTAGGATGAGCTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * * * * * *
283483 TCGAACTTGTCAAAATTTTATGAGTTATTTTATAACTTCAGTTCCTTAATGTGTTCAAGATCATC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* * * ** *
283548 CAATCCTTTGAACAATTTTCCAAACATTCTGTGCTCGAGAAATCGCATCATTTGGTCTAAATAAT
131 CAATCCTTCGAGCAATTTT-CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
283613 TTTTCATTTTGTACAA-AAGTT
195 TTTTCATTTTGTA-AACAAGTT
* * * * *
283634 TTGGTCCTTGAATTAAAAACTGATTTACGTGATAAGTGTTTCTCTCTTGGTTCTTGGACGAAGTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
** * * *
283699 CTC-AACTTGTCAAAGATTTACGAGTTCTTTTATAACTTTGGTTCATTAAAGTATTCAAGACGAT
66 C-CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGAT
* * * * *
283763 CC-ATCCCTTTGAGCAATTTTTCGAACATTACACGCTTGTGAAATCGCATCATTTGGTCTAAATA
130 CCAAT-CCTTCGAGCAA-TTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATA
* *
283827 GTTTGTCATTTCGTAAACAAGTT
193 GTTTTTCATTTTGTAAACAAGTT
** * *
283850 TTGGTCTTTGAATTAAAATTTTTTTTTACGTGAGAATCGTTTCTCTCTTGGTTCTTGGACGAACT
1 TTGGTCTTTGAATTAAAA-ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * *
283915 TTCGAACTTGTCAAACTATTACGAGTTCTTTTATAACATCGGTTCCATAAAGTATTCAAGACGAT
65 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGAT
* ** ** *
283980 CCAATCCTTCGAGCATTTTTCGAACATTCCATGCTTAAGAAATCAAATAATTTGGTCTAAATAGT
130 CCAATCCTTCGAGCAATTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
*
284045 TTGTCATTTTGTAAACAAGTT
195 TTTTCATTTTGTAAACAAGTT
* * * * *
284066 TTGGTCTTTCAATTAAAAACTTATTCACGTGAGAATT-TTTCTCTCTTCGTT-TGTGGATGGACT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGGACGAACT
* * * * * * * *
284129 TTCGAAATTATCAAACTTTTACGAGTTCTTTCATAACTCCGGTTCGTTAAAATATTCAAGACGAT
65 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGAT
* * * * **
284194 CCAATCATT-GAGCAATTTTCTGAGCATTCCATCCTCGGGAAATCGCATCATTTGGTGAAAATAG
130 CCAATCCTTCGAGCAATTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
284258 TTTTTCATTTTGTAAACAA-TT
194 TTTTTCATTTTGTAAACAAGTT
* * * * * * *
284279 TTGGTCTTTGAATTAACATCTTATTTACGTGAGAATTGTTTCTCTCCTAGTTATAGGATGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
** * * * *
284344 TTGATCTTGTCAAACTTTTACGATTTCATTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* * * * * * * *
284409 CGATCCTTTGAGCAATTTTTCGAACATTCCTTGCTCGGGAAATTGCATTATTTGGTCTATACAGT
131 CAATCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
* *
284474 TTTTCATTTTATGAACAAGTT
195 TTTTCATTTTGTAAACAAGTT
* * * * * *
284495 TTTGTCCTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCCCTTAGTTCTTGGA-TAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
** * * * * * *
284559 GTGAACTTGTCAAACATTTATGAGTTCTTTTATAACTTCTGTTCGTTAAAGTATACAAGACGATC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
** * * * * ** * *
284624 CTTTCCTTCGAGCAATCTTTCAAACATTCCTTGCCCGGGAGTTTGCATCATTTCGTCTAAATAGT
131 CAATCCTTCGAGCAAT-TTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
284689 TTTTCATTTTGTAAACAAGTT
195 TTTTCATTTTGTAAACAAGTT
* * * * *
284710 TTTGTGC-TTAAATTAAAAAATTGTTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
1 TTGGT-CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * ** * *
284774 TCCGAAATTGTCAAACTTTTACGAGTTCTCTTGTAACATCTATTCCATAAAGTATTCAAGACGAT
65 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGAT
* * * * * *
284839 CCAATACTTTGACCAATTTTCTAAATATTCCATGCTCCG-GAAATCGTATCATTTGGTCTAAATA
130 CCAATCCTTCGAGCAATTTTC-GAACATTCCATGCT-CGAGAAATCGCATCATTTGGTCTAAATA
* *
284903 -TTTTATCATCTT-TAAAAAAG-T
193 GTTTT-TCATTTTGTAAACAAGTT
* * *
284924 TTGGTCTTTGAATTAAAAATTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * *
284989 CCGACCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTATAGTATTCAAAATGATC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* * * * * * * *
285054 CAATCCTTCAAGCAATTTTCCAAATATTCCGTTCTCGAGAAATCGAATCAATTGGTCTAAAGAGT
131 CAATCCTTCGAGCAATTTT-CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
*
285119 TTTCCATTTTGTAAACAAGTT
195 TTTTCATTTTGTAAACAAGTT
* * * * *
285140 TTGGTCCTTGAATTAAAAACTTATTTATGTGAGAATTATTTGTCTCTTGGTTCTTAGACGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * * * **
285205 CCGAACTTGCCAAACTTTTACGAGTTCTTTTATAACTTTGTTTCCTTACAGTATCCAAGACAATC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* * * * * * * *
285270 CATTCCTTCGAGCAATTTTTCGAACATTCGACGCTCAAGAAATCACATCATTTAGCCAAAATAGT
131 CAATCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
** *
285335 TTGCCATTTTGTGAACAAGTT
195 TTTTCATTTTGTAAACAAGTT
* * * * * * *
285356 TTGTTCATTGAATT-AAAACTTATTTACTTGAGAATTCTTTCTCTTTTGGTTCATGGACGAAGTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
** * * * * *
285420 CTAAACTTGTCAAACTTTTACGAGTTCTTTCATAACTTCGATTCGTTAAAATATTCAAGACGATC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* ** *
285485 CAATCCTTCGAGCAATTTTTTGAACATTCCATGCTC-AGGAAATCATATCATTTGGTCAAAATAG
131 CAATCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCTAAATAG
*
285549 TTTTCCATTTTGTAAACAAGTT
194 TTTTTCATTTTGTAAACAAGTT
* * * * *
285571 TTGGTCTTTAAATTAAAAACTTATTTGCGTGAAAATTGTTTCTCTCTTGGTTTTTGGATGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * * *
285636 CTGAA-TTTTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTTTTCAAGAAGATT
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* *
285700 CATTCCTTAGAGCAAATTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
131 CAATCCTTCGAGC-AATTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
* * **
285765 TTATCATTTTGTAAAAAAAAT
195 TTTTCATTTTGTAAACAAGTT
* * * * * *
285786 TTGGTCCTTCAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTCG-TGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
** * * * * *
285850 CTTAACTTATCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCGTTAAACTATTCAAGATGATT
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* * * * * *
285915 CATTCCTTCGTGCAATTTCCTGAACATTTCATTCTCGAGAAATCGCATCTTTTGGTCTAAATAGT
131 CAATCCTTCGAGCAATTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
* *
285980 TTATCTTTTTGTAAACAAGTT
195 TTTTCATTTTGTAAACAAGTT
* * * ** * * *
286001 TTGGTCTTTGAATTAAAAAATTATTTACATGGGAACAGTTTCTCTCTAGATT-TGTAGACGAACG
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGGACGAAC-
* * **
286065 TT-CGAAACCT-TCAAACTTTTACGA-TT-TCTT-T--CTTCAATTCCTTAAAGTATTCAAGATG
64 TTCCG-AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATG
* * * * *
286123 ATCCATTTCTTTGAGCAATTTTTC-AACATTCGATGCTC-AGGAAATCACATCATTTGGTCTAAA
128 ATCCAATCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCTAAA
* *
286186 TAGTCTGTCATTTTGTAAACAAGTT
191 TAGTTTTTCATTTTGTAAACAAGTT
* * * * *
286211 TCGCTCTTTGAATTAAAAAATTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * * * * *
286276 CCGAACTTGTCAAACTATTATGACTTCTTTTATAACATCGGTTCCATAAATTATTCAAGACGATC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* * * *
286341 CAATCCTTCGAGAAACTTTTTGAACATTCCATGCTCAAGAAATTGCATCATTTGGTCTAAATAGT
131 CAATCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
*
286406 TCTTCATTTTGTAAACAAGTT
195 TTTTCATTTTGTAAACAAGTT
* *
286427 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCCCTTGGTTCGTGGACGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * *
286492 CCGAACTTGTCAAACTTTTACGAGTTATTTCATAACTTCGGTTCGTTAAAGTATTCAAGATGATC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* * * * *
286557 CAATCATTTGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCGTCATTTGGTCAAAATAGT
131 CAATCCTTCGAGCAATTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
286622 TTTTCATTTTGTAAACAAGTT
195 TTTTCATTTTGTAAACAAGTT
* * * * *
286643 TTGGTATTTGAATTAAAAACTTGTTTACATGAGAATCGTTTCTCTCTTGGTTCGTGGACGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * *
286708 TCGAACTTGTCAAACTTTTACGAGTTCTTTCT-TAACTTCGATTCGTTAAAGTATTCAAGACGAT
66 CCGAACTTGTCAAACTTTTACGAGTTCTTT-TATAACTTCGGTTCCTTAAAGTATTCAAGATGAT
* * * * * * **
286772 CCAAACATTTGAGCAAATTTCTGAACATTCCATACTCGGGAAATCGCATCATTTGGTGAAAATAG
130 CCAATCCTTCGAGCAATTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
*
286837 TTTTTTATTTTGTAAACAAGTT
194 TTTTTCATTTTGTAAACAAGTT
* * * *
286859 TTGGTCTTTAAATTAAAATCTTA-TTACGTAAGAATTGTTTCTCTCTTGG-TCATAGGACGAACT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TTGGACGAACT
* **
286922 AT-CGAACTTGTTAAACTTTTACGAGTTC-TTTATAACTTCGGTTCCTTAAAGTATTCAAGACAA
65 -TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGA
* * * **
286985 TCCAATTCTCCGAGCAATTTTTCGAACACTCCATGCTCGAGAAATCATATCATTTGGTCTAAATA
129 TCCAATCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATA
* * **
287050 G-TTTGCATATCATAAA-AAGTT
193 GTTTTTCATTTTGTAAACAAGTT
* *** * * *
287071 TTGGTATTTTTGTTAAAAACTTATTTACATGAGAATTGCTACTCTCTTGGTTCTTGGACGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * ** * *
287136 CCAAACTTTTCAAAATTTTTTGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGATCATC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* * * * *
287201 CAATCCTACGAACAATTTTTCGAACATTCCATACTCGAGAAATCGCATTATTTGGTCTAAATAAT
131 CAATCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
*
287266 TTTTCATTCTGTAAACAAGTT
195 TTTTCATTTTGTAAACAAGTT
* * ** * *
287287 TTGGTCTTTGAATTAAAAAATTATTTATGTGAGAATTGTTTCTCTCTTCATTCTTGGATGAACGT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * * * **
287352 CCGAACATGTCAAACATTTACGACTTCTTTTATAACTTCAGTTCCTTATAGTATTCAAGACAATC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
*
287417 CATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAAATCGCATCATTTGGTCTAAATAG
131 CAATCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGAG-AAATCGCATCATTTGGTCTAAATAG
*
287482 -TTTGCATTTTGTAAACAAGTT
194 TTTTTCATTTTGTAAACAAGTT
* *
287503 TTGGTCTTTGAATTAAAATA-TTATTTATGTGAGAATTGCTTCTCTCTTGGTTCTTGGACGAACT
1 TTGGTCTTTGAATTAAAA-ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * * * * *
287567 TCCGAACTTGTGAAACTATTAAGAGTTCTTTTATAACATCAGTTCCATAAAGTATTCAAAACGGT
65 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGAT
* * * * * *
287632 CCAATACTTCAAGCAATTTCTCAAACATTTCATGCTCAAGAAATCGAATCATTTGGTCTAAATAG
130 CCAATCCTTCGAGCAATTT-TCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
*
287697 TTTGTCATTTTGTAAACAAGTT
194 TTTTTCATTTTGTAAACAAGTT
* * * * ** *
287719 TTGGTCTTTCAATTAAAAACTTATTCATGTGAGAATTTTTTCTCTCTTCATTCATGGACGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
** * * *
287784 TTGAACTTGTCAAACTTTTACGAGTTCTTTCATAACTTCGGTTCGTTAAAATATTCAAAGATGAT
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTC-AAGATGAT
* * * * **
287849 CCAATCATTCGAGCAATTTTTTGAACATTCCACGCTCGGGAAATCGCATCATTTGGTGAAAATAG
130 CCAATCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
287914 TTTTTCATTTTGTAAACAAGTT
194 TTTTTCATTTTGTAAACAAGTT
* * * * *
287936 TTGGTCCTTGAATTAACATCTTATTTACGTGAGAATTGTTTCTCT-TCTGGTTATAGGACGAACT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT-TGGTTCTTGGACGAACT
** * * *
288000 TTTGAACTTGTCAAAATTTTATGAGTTCATTTATAACTTCGGTTCCTTAAAGTATTCAA-ATACG
65 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAT--G
* * * * * **
288064 ATTCGATCCTTCGAGCAATTTTCCGAACATTCCTTGCTGGAGGAATTACATCATTTGGTCTAAAT
128 ATCCAATCCTTCGAGCAATTTT-CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAAT
*
288129 AGTTTTTCATTTTGTGAACAAGTT
192 AGTTTTTCATTTTGTAAACAAGTT
** * * * *
288153 TTTTTCCTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCCCCTGGTTCTTGGATGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
** * * * * * *
288218 TTGAACTTGTCAAACATTTACGAGTTCTTGTATAACTTCTGTTCGTTGAAGTATTC-A-ATCAAT
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAT-GAT
* * * * * * * * *
288281 CCATTCCTTTGAGCAATCTTCCGAACATTCCTTGCTTGGGAAGTTGCATCATTTGGACTAAATAG
130 CCAATCCTTCGAGCAAT-TTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
*
288346 TTTTTC-TATTTGTAAATAAGTT
194 TTTTTCAT-TTTGTAAACAAGTT
* * * * * *
288368 TTTGTCCTTAAATTAAAAAATTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * * * * *
288433 CCGACCCTGTCAAACTTTTACGAGTTGTTTTATAACATCGATTCCATAATGTATTCAAGACT-AT
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA-TGAT
* * * * * * * *
288497 CCAATACGTCGACCAATTTTCTGAACATTCCATGCTCGGGAAATCGAATCAATTGGTATATATAG
130 CCAATCCTTCGAGCAATTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
288562 TTTTTCATTTTGTAAACAAGTT
194 TTTTTCATTTTGTAAACAAGTT
* * * * * * *
288584 TTGGTCCTTAAATTAAAAACTTATTTACGTGAGAATTATTTGTCTCTTAGTTCTTAGATGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
** * * * *
288649 TTGAACTCGTCAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACT-AC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA-TGAT
* * * *
288713 CCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCAAGAAATCACATCATTTGGTCAAAATAG
130 CCAATCCTTCGAGCAATTTT-CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
** *
288778 TTTGCCATTTTGTAAAAAAGTT
194 TTTTTCATTTTGTAAACAAGTT
* ** * *
288800 TTGGTCTTTGAATTAAAAAATTATTTAATTGAGAATTGTTTCTCT-TTCGGTTCGTGAACGAACT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GGTTCTTGGACGAACT
* * * * **
288864 TCCGAACTAGTCAAACTTTTACGAGTTCTTTCATAA-TTGCGGTTCATT-AAGTATACAAGACAA
65 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-CGGTTCCTTAAAGTATTCAAGATGA
* * *
288927 TCCAATCCTTCGAGCAATTTTTCGAACATTCCATGCACAAGAAATCGCATCATTTGGTCAAAATA
129 TCCAATCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATA
** * *
288992 GTTTGCCATTTTAT-AA-TAGTT
193 GTTTTTCATTTTGTAAACAAGTT
* *
289013 TTGGTCTTCGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * *
289078 CCAAAATTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTTTTCAAGATG---
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* * *
289140 -AATCTTTCGAGCAATTTTTCGACCATTCGATGCTCGAGAAATCGCATCATTTGG-CATAAATAG
131 CAATCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTC-TAAATAG
* *
289203 TTTGTCATTTTCTAAACAAGTT
194 TTTTTCATTTTGTAAACAAGTT
* * * * *
289225 TTGGTCCTTGAAATAAAAACTTATTTATGTGAGAAATGTTTCTCTCTTGGTTCTTGGATGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
** * * * * * * *
289290 CTTAGCTTATCGAACTTTTACAAGTTCTTTTATAACTTCGGTTCGTTAAACTATTCAAGACGATC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* * * * * * * *
289355 CATTCCTTCGTGCAATTTCCCGAACATTTCATTCTCGAGAAATTGCATCTTTTTGTCTAAATAGT
131 CAATCCTTCGAGCAATTT-TCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
* *
289420 TTGTCTTTTTGTAAACAAGTT
195 TTTTCATTTTGTAAACAAGTT
* * ** *
289441 TTGGTCTTTGAATTAAAAAATTATTTACGTGGGAACAGTTTCTCTCTAT-ATT-TGTGGACGAAC
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT-TGGTTCT-TGGACGAAC
* * ** * ** * * *
289504 ATCCAAACTTGTCAAGTTTTTACGAGTTCTGTTATAACTTCAATTTCATAAAATATTCAAGATGA
64 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGA
* * * * * * * * *
289569 TCCATTCCTTCAAACAATTTTCCGAACATTCCACGC-CTGTGAAACCACATCATTTAGTCTAAAA
129 TCCAATCCTTCGAGCAATTTT-CGAACATTCCATGCTC-GAGAAATCGCATCATTTGGTCTAAAT
* *
289633 AGTTTGTCATTTTGTAAATAAGTT
192 AGTTTTTCATTTTGTAAACAAGTT
* * * *
289657 TTGGTTTTTGAATTAAAAAATTATTTACGCGAGAATTGTTTCTCTCTTGGTTCATGGACGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * * *
289722 CCGAACTTGTCAAACTATTACGAGTTCTTTTATAACATCAGTT-CTGCAAAGTATTCAAGACGAT
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT-TAAAGTATTCAAGATGAT
** * * * * *
289786 CCAATCCTTTTAGAAATTTTGTGAACATTCCATGCTCAAGAAATCACATCATTTGGTCTAAATTG
130 CCAATCCTTCGAGCAATTTT-CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
*
289851 TTCTTCATTTTGTAAACAAGTT
194 TTTTTCATTTTGTAAACAAGTT
* * * * *
289873 TTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCACTTTTGGTTCGTGGACAAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * * * *
289938 CCGAACTGGTCAAACCTTTATGAGTTCTGTTATAACTTCGGTTTCTTAAAGTTTTCAAGATGATC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* * * * *
290003 CAATCCTTCAAGCAATATTTTGACCATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGT
131 CAATCCTTCGAGCAAT-TTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
* *
290068 TTGTCATTTTCTAAACAAGTT
195 TTTTCATTTTGTAAACAAGTT
* * * * *
290089 TTAGTCCTTGAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTCGATGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
** * * * *
290154 CTTAACTTATCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCGTTAAACTATTCAAGACGATC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* * * * * * *
290219 CATTCCTTTGTGCAATTTCTCGAACATTTCATTCTCGGGAAATCGCATCTTTTGGTCTAAATAGT
131 CAATCCTTCGAGCAATTT-TCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
* *
290284 TTGTCTTTTTGTAAACAAGTT
195 TTTTCATTTTGTAAACAAGTT
* * * *** * * * *
290305 TTGGTCTTTGAATTAAAAAATTATTTACATGGGAACAATTTCTCTCTAGATTCGTGGAGGAACGT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-T
* * * * * ***
290370 T-TGAAACCT-TCATACTTTTATGATTTCTTTTATAACTTAAATTCCTTAAAGTATTCAAGATGA
65 TCCG-AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGA
* * * * * * * *
290433 TACATTTCTTTGACCAATTTTTCG-ACATTCCATGCTCGAAAAATCACATCATTTGGTCCAAATA
129 TCCAATCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATA
*
290497 GTTTGTCATTTTGTAAACAAGTT
193 GTTTTTCATTTTGTAAACAAGTT
* * *
290520 TTGGTCTATGAATTAAAAAATTATTTACGTGAGAATTGTCTCTCTCTTGGTTCTTGGACGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * * * * * * *
290585 TCGAACTTGTCAAACTATTATGACTTCTTTTATAACATCGATTCCATAAATTATTCAAGACGATC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* * * *
290650 CAATCCTTCGAGAAATTTTTTGAACATTCCACGCTCAAGAAATCGCATCATTTGGTCTAAATAGT
131 CAATCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
* *
290715 TCTTCATTTTTTAAACAAGTT
195 TTTTCATTTTGTAAACAAGTT
* * *
290736 TTGGTCTTTGAATTAAAAACTTATTTACGTGGGAATTGTTTCTCCCTTGGTT-TGTGGACAAACT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGGACGAACT
* * * *
290800 TCCGAACTTGTCAAACTTTTACGAGTTATTTCATAACTTCGTTTCGTTAAAGTATTCAAGATGAT
65 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGAT
* * * * * * * * *
290865 GCAATCATTTGAGCAATTTTCTAAACATTCCATGCTTGGGAAATCGCGTCATTTGGTCAAAATAA
130 CCAATCCTTCGAGCAATTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
290930 TTTTTCATTTTGTAAACAAGTT
194 TTTTTCATTTTGTAAACAAGTT
* * *
290952 TTGGTATTTGAATTAAAAACTTATTTACGTGAGAATCGTTTCTCTCTTGGTTCATGGACGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * * *
291017 TCGAACTTGTCAAACTTTTACGAGTTCTTTTCTTAACTTCAGTTCGTTAAAGTATTCAAGACGAT
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTT-ATAACTTCGGTTCCTTAAAGTATTCAAGATGAT
* * * * * **
291082 CCAAACATTTGAGCAAATTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTGAAAATAG
130 CCAATCCTTCGAGCAATTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
291147 TTTTTCATTTTGTAAACAAGTT
194 TTTTTCATTTTGTAAACAAGTT
* * *
291169 TTGGTCTTTGAA-TAAAAATCTTATTTACGTAAGAATTGTTTCTCTCTTGGTTATAGGACGAACT
1 TTGGTCTTTGAATTAAAAA-CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* **
291233 TTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACAAT
65 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGAT
* *
291298 CCAATCCTTCGAGCAATTTTTCGAACACTCCATGCTCGAGAAATCGTATCATTTGGTCTAAATAG
130 CCAATCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
* * *
291363 -TTTGCATATCGTAAA-AAGTT
194 TTTTTCATTTTGTAAACAAGTT
* * *** * * * *
291383 TTGTTATTTTTGTTAAAAACTTATTTACTTGAGAATTGCTTCTCTCTTGGTTCTTGAAGGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * * *
291448 TCGAACTTTTCAAACTTTTATGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGATCATC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* * * *
291513 AAATCCTTCGAACAATTTTCTGAACATTCCATGCTCGAGAAATCGAATCATTTGGTCTAAATAAT
131 CAATCCTTCGAGCAATTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
291578 TTTTCATTTTGTAAACAAGTT
195 TTTTCATTTTGTAAACAAGTT
* * *
291599 TTGGTCCTTGAATTAAAAACTTATTTACGTGATAATTGTTTCTCTCTTGGTTCTTGGATGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * ** * ** **
291664 CTGAACTTGGCAAACTTTTACGAGTTCTTTTATAACTTCAGTTTATGAAAACATTCAAGACAATC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* *
291729 CAATCCTTCGAGCAATTTTTCGAACACTCCATGCTCGAGAAATCGAATCATTTGGTCTAAATAG-
131 CAATCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
* **
291793 TTTGCATTTCATAAA-AAGTT
195 TTTTCATTTTGTAAACAAGTT
* *** * * * *
291813 TTGGTATTTTTGTTAAAAACTTATTTACGTGAGAATTGCTTCTTTCTTTGTTCTTAGACGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * * *
291878 CCGAACTTTTCAAACTTTT-TGAGTTCTTTTATAACTTCAGTTCCGTAAAGTATTCAAGATCATC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* * * *
291942 AAATCCTTCGAACAATTTTCCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAAT
131 CAATCCTTCGAGCAATTTT-CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
292007 TTTTCATTTTGTAAACAAGTT
195 TTTTCATTTTGTAAACAAGTT
* * * * *
292028 TTGGTCTTTGAATTAAAAAATTGTTTACGTGAGAATTGTTTCTCTCTTCGTTCTTGGATGAACGT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * * * **
292093 CCGAACTAGTCAAACTTTTACCAGTTCTTTTATAACTTCAGTTCCTTATAGTATTCTAGACAATC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* *
292158 C-ATCCCTTCGAGCAATTTTTTGAACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAG
131 CAAT-CCTTCGAGCAA-TTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
* *
292222 -TTTGCATTTTGTAAAAAAGTT
194 TTTTTCATTTTGTAAACAAGTT
* *
292243 TTGGTCTTTGAATTAAAAAATTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* ** * * * * * *
292308 CCGAACTTGTAAAACCATTAAGAGTTCTCTTATAACATCGGTTCCATAAAGTATTCAAGACGGTC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* ** *
292373 CAATACTTCGAGCAATTTCTCGAACATTCCATGCTTAAGAAATCGAATCATTTGGTCTAAATAGT
131 CAATCCTTCGAGCAATTT-TCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
*
292438 TTTTCATTTTCTAAACAAGTT
195 TTTTCATTTTGTAAACAAGTT
* * * ** *
292459 TTGGTCTTTCAGTTAAAAACTTA-TTACGTGAGAATTTTTTCTCTCTTTATTCGTGGACGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * * *
292523 TCGAACTTGTCAAACTTTTACGAGTTCTTTCATAACTTCGGTTCATTAAAATATTCAAGACGATC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* * * * **
292588 CAATCATTCGAGCAATTTTCTGAACATTTCATGCTCGGGAAATCTCATCATTTGGTGAAAATAGT
131 CAATCCTTCGAGCAATTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
292653 TTTTCATTTTGTAAACAAGTT
195 TTTTCATTTTGTAAACAAGTT
* * * *
292674 TTGGTCTTTGAATTAACATCTTATTTACGTGAGAATTGTTTCTCCCCTT-GTTAC-AGGACGAAC
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT-CTCTTGGTT-CTTGGACGAAC
** * * * *
292737 TTTTGAACTTGTCAAACTTTTATGAATTCATTTATAACTTTGGTTCCTTAAAGTATTCAAGATGA
64 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGA
* * * * *
292802 TTCGATCCTTCGAGCAATTTTCTGAACAATCCTTGCTCGAGAAA-CTGCATCATTTGGTCTATAT
129 TCCAATCCTTCGAGCAATTTTC-GAACATTCCATGCTCGAGAAATC-GCATCATTTGGTCTAAAT
*
292866 AGTTTTTCATTTTGTGAACAAGTT
192 AGTTTTTCATTTTGTAAACAAGTT
* * *
292890 TTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCCCTTGGTTCTTGGAAGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* ** * *
292955 CTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTTGTTCGTTGAAGTATTCAAGACT-AT
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA-TGAT
* * * * * * *
293019 CCATTCCTTCGAGCAATCTTCCGAACATTCCTTGCTTGGGAAGTTGCATCATTTGGTCTAAATAG
130 CCAATCCTTCGAGCAAT-TTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
* *
293084 TTTTTC-TGTTTGAAAATAAGTT
194 TTTTTCAT-TTTGTAAACAAGTT
* * * *
293106 TTTGTCCTTAAATTATAAAA-TTATTTACATGAGAATTGTTTCTGC-CTTGGTTCTTGGACGAAC
1 TTGGTCTTTGAATTA-AAAACTTATTTACGTGAGAATTGTTTCT-CTCTTGGTTCTTGGACGAAC
* * * * * * * *
293169 TTCCGACCCTGTCCAACTTTTACGAGTTGTTTTATAACATT-GATTCCATAATGTATTGAAGACT
64 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTCGGTTCCTTAAAGTATTCAAGA-T
* * * * * * * * * *
293233 -ATCCAATACTTTGACCAATTTTCTAAACATTCCATGCTCGGGAAACCGAATCAATTGGTATATA
127 GATCCAATCCTTCGAGCAATTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAA
293297 TAGTTTTTCATTTTGTAAACAAGTT
191 TAGTTTTTCATTTTGTAAACAAGTT
* * * * * *
293322 TCGGTCCTTAAATTAAAAACTTATTTACGTGAGAATTATTTGTCTCTTGGTTCTTAGACGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
** * *
293387 CTAAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACT-AT
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA-TGAT
* * *
293451 CCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCAAGAAATCGCATCATTTGGTCAAAATAG
130 CCAATCCTTCGAGCAATTTT-CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
**
293516 TTTGCCATTTTGTAAACAAGTT
194 TTTTTCATTTTGTAAACAAGTT
* ** * * * *
293538 TTGGTCTTTGAATTAAAAAATTATTTAATTGAGAATTGTTTCTCTTTTAGTACGTGGACGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * * * * *
293603 TCGAACTAGTCAAACGTTTACGAGTTCTTTCATAACTTCGGATCATT-AAGTATACAAGATGATC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
*
293667 CAATCCTTCGAGCAATTTTTCGAACATTCCATGCAT-GAGAAATCGCATCA-TTGAGTCAAAATA
131 CAATCCTTCGAGCAA-TTTTCGAACATTCCATGC-TCGAGAAATCGCATCATTTG-GTCTAAATA
** *
293730 GTTTGCCATTTTATAAACAAGTT
193 GTTTTTCATTTTGTAAACAAGTT
* * * *
293753 TTGGTCTTTGAATTAACAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGATGGA-TT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * * *
293817 CCGAAATTTTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTTTTCAAGATGTTC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* * *
293882 CAATCCTTTGAGCAATTTTTC-AACCATTCCATGCTCGGGAAATCGCATCAATTGG-CATAAATA
131 CAATCCTTCGAGCAA-TTTTCGAA-CATTCCATGCTCGAGAAATCGCATCATTTGGTC-TAAATA
** *
293945 GTTTGCCATTTTCTAAACAAGTT
193 GTTTTTCATTTTGTAAACAAGTT
* * *
293968 TTGGTCCTTGAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
** * * * * *
294033 CTTAACTTATCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCGTTAAACTATTCAAGACGATC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* * * * * * * * *
294098 CATTCCTTTGTGCAATTTCCCGAACATTTCATTCTCGGGAAATCGCATCTTTTGGTCTATATAGT
131 CAATCCTTCGAGCAATTT-TCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
* *
294163 TTATCTTTTTGTAAACAAGTT
195 TTTTCATTTTGTAAACAAGTT
* * ** * * * *
294184 TTGGTCTTTGAATTAAAAAATTATTTACGTGGGAACAGTTTCTCT-TTAGATTCGTGGATGAACA
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GGTTCTTGGACGAACT
* * ** * * * * *
294248 TCCGAACTTGTCAAGCTTTTACGAGTTCTTTTATAAATTCAATTTCATAAAATATTCATGACGAT
65 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGAT
* * * * * * * *
294313 CCATTCCTTCGAACAATTTTTCGAACATTCCACGCCCGTGAAACCACATCATTTGGTCTAAAAAG
130 CCAATCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
* *
294378 TTTGTCATTTTGTAAATAAGTT
194 TTTTTCATTTTGTAAACAAGTT
* * *
294400 TTGGTCTTTGAATTAAAAAATTATTTACGTGAGAATTGTTTCTCTCTTGGTTCATGGATGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * * * *
294465 TCGAACTTGTCAAACTATTACGAGTTCTTTTATAACATCAGTTCCATAAAGTATTCAAGACGATC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* * * * *
294530 CAATCCTTCTAGAAATTTTACGAACATTCCATGGTCAAGAAATCGCATCATTTGGTCTAAATTGT
131 CAATCCTTCGAGCAATTTT-CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGT
*
294595 TCTTCATTTTGTAAACAAGTT
195 TTTTCATTTTGTAAACAAGTT
* * *
294616 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTTCGTGGACCAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * * * *
294681 TCGAACTTGTCTAACCTTTATGAGTTCTTTTATAATTTCGGTTCCTTAAAGTTTTCAAGATGATC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
* * *
294746 CAATCCTTCAAGCAATTTTTCGACCATTCCATGCTC-AGGAAATTGCATCATTTGGTCTAAATAG
131 CAATCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCTAAATAG
* *
294810 TTTGTCATTTTCTAAACAAGTT
194 TTTTTCATTTTGTAAACAAGTT
* * * *
294832 TTGGTCCTTGAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTTGATGAACTT
1 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
** * * * * *
294897 CTTAACTTATCAAACTTTGACGAGTTCTTTTATAAATTCGGTTCGTTAAACTATTCAAGATGATC
66 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
294962 AATTGCTTTG
Statistics
Matches: 12317, Mismatches: 2019, Indels: 437
0.83 0.14 0.03
Matches are distributed among these distances:
209 8 0.00
210 185 0.02
211 113 0.01
212 257 0.02
213 489 0.04
214 1147 0.09
215 2917 0.24
216 6431 0.52
217 764 0.06
218 6 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (215 bp):
TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATC
CAATCCTTCGAGCAATTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
TTTCATTTTGTAAACAAGTT
Found at i:288786 original size:21 final size:20
Alignment explanation
Indices: 288762--288800 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
288752 GAAATCACAT
*
288762 CATTTGGTCAAAATAGTTTGC
1 CATTTGGT-AAAAAAGTTTGC
*
288783 CATTTTGTAAAAAAGTTT
1 CATTTGGTAAAAAAGTTT
288801 TGGTCTTTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.41
Consensus pattern (20 bp):
CATTTGGTAAAAAAGTTTGC
Found at i:295792 original size:185 final size:185
Alignment explanation
Indices: 295474--295851 Score: 648
Period size: 185 Copynumber: 2.0 Consensus size: 185
295464 TGGTAAAAGT
*
295474 GTTGACAAAAGAATTATGCATACAAAATAAATGTGGTAATAAGATAATTTGTGTTTCCAAAGTGC
1 GTTG-CAAAAGAATTATGCATACAAAATAAATGTGGTAACAAGATAATTTGTGTTTCCAAAGTGC
* * * *
295539 GTGTCATAAGAAAATGCAAAACAATAAAGTTGATCAAGAATTAATCAGCAAGACTTCAGATTCAC
65 GTCTCATAACAAAATGCAAAACAATAAAGTTGATCAAGAATTAATCAGCAAGACATCAGATCCAC
*
295604 TAAGTACTTAACAAGCTTAGCAGAAATGATTGGTGAAATCTTCAGTACAAGGCAAC
130 TAAGTACTTAACAAGCTTAGCAAAAATGATTGGTGAAATCTTCAGTACAAGGCAAC
*
295660 GTTGCAAAAGAATTATGCATACAAAATAAATGTGGTAACAAGATAATTTGTGTTTGCAAAGTGCG
1 GTTGCAAAAGAATTATGCATACAAAATAAATGTGGTAACAAGATAATTTGTGTTTCCAAAGTGCG
*
295725 TCTCATAACAAAATGCAAAACAATAAAGTTGATCAAGAATTAATCTGCAAGACATCAGATCCACT
66 TCTCATAACAAAATGCAAAACAATAAAGTTGATCAAGAATTAATCAGCAAGACATCAGATCCACT
* * *
295790 AAGTACTTAACAAGCTTAGCAAAAATGATTGGTGAAATCTTTAGTACAAGGTAAG
131 AAGTACTTAACAAGCTTAGCAAAAATGATTGGTGAAATCTTCAGTACAAGGCAAC
295845 GTTGCAA
1 GTTGCAA
295852 TCAATAAGTC
Statistics
Matches: 181, Mismatches: 11, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
185 177 0.98
186 4 0.02
ACGTcount: A:0.42, C:0.13, G:0.18, T:0.26
Consensus pattern (185 bp):
GTTGCAAAAGAATTATGCATACAAAATAAATGTGGTAACAAGATAATTTGTGTTTCCAAAGTGCG
TCTCATAACAAAATGCAAAACAATAAAGTTGATCAAGAATTAATCAGCAAGACATCAGATCCACT
AAGTACTTAACAAGCTTAGCAAAAATGATTGGTGAAATCTTCAGTACAAGGCAAC
Found at i:301057 original size:18 final size:19
Alignment explanation
Indices: 301034--301071 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
301024 CAATTTATTC
301034 TCTTTTTCTTT-TC-TTTTT
1 TCTTTTT-TTTCTCATTTTT
301052 TCTTTTTTTTCTCATTTTT
1 TCTTTTTTTTCTCATTTTT
301071 T
1 T
301072 TCATTCAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 3 0.17
18 9 0.50
19 6 0.33
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.82
Consensus pattern (19 bp):
TCTTTTTTTTCTCATTTTT
Done.