genome.fa.s13773.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013773.1 Kokia drynarioides strain JFW-HI SEQ_128801, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45570

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1612--1681	23	3.0	23	85	2	95	28	14	17	40	1.88
3439--3498	24	2.5	24	86	0	84	50	10	13	26	1.73
5433--5483	24	2.1	24	92	0	84	58	5	9	25	1.52
5994--6028	17	2.1	17	88	0	52	51	2	28	17	1.59
11114--11148	17	2.1	17	88	0	52	57	0	22	20	1.41
11266--11325	14	4.5	14	74	25	51	41	0	0	58	0.98
12872--12915	13	3.5	13	75	12	56	52	2	4	40	1.34
12870--12926	24	2.4	24	100	0	114	56	3	3	36	1.34
14838--14908	33	2.2	33	89	2	108	25	23	18	32	1.97
18757--18894	51	2.7	51	81	11	176	47	7	28	16	1.75
20621--20690	23	3.0	23	85	2	95	42	18	11	27	1.84
22553--22590	3	12.7	3	100	0	76	68	0	0	31	0.90
32606--32665	31	1.9	31	82	0	75	25	11	18	45	1.83
32860--32929	32	2.2	32	85	7	90	42	20	14	22	1.88
35773--35899	30	4.2	31	76	7	109	37	20	3	37	1.71
40476--40566	21	4.5	19	76	17	69	79	1	15	4	0.95
40487--40566	21	3.8	21	80	11	76	81	1	13	3	0.89
40523--40565	12	3.3	13	81	12	52	79	0	18	2	0.85
41472--41645	50	3.5	50	76	3	152	35	19	21	22	1.96
41667--42081	80	5.2	80	91	0	688	31	23	17	26	1.97
41735--42198	80	5.8	78	88	3	264	32	23	17	26	1.97
42735--42891	57	2.6	57	81	13	167	49	2	0	47	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42723--42895	61	2.8	60	77	16	176	47	2	0	49	1.18

Tables:   1

The End!