genome.fa.s13774.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013774.1 Kokia drynarioides strain JFW-HI SEQ_128802, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72413

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3636--3690	21	2.6	20	77	8	56	32	0	3	63	1.12
3883--3959	17	4.5	17	79	6	84	42	1	2	53	1.23
3881--3968	23	3.6	23	69	19	70	42	1	2	54	1.20
3881--3965	6	14.8	6	70	14	63	43	1	2	52	1.21
3881--3959	34	2.3	34	84	4	106	43	1	2	53	1.22
3933--3978	23	2.0	23	87	4	67	43	2	4	50	1.34
5617--6030	58	7.1	59	80	5	333	33	27	4	34	1.78
5617--5906	29	10.0	29	77	8	259	35	28	2	33	1.72
6313--6497	96	1.9	96	84	8	252	31	19	12	35	1.90
10163--10195	2	16.5	2	100	0	66	48	0	0	51	1.00
14863--14974	40	2.8	40	82	5	145	23	20	22	33	1.97
15175--15218	21	2.1	21	100	0	88	27	43	22	6	1.78
19044--19089	2	23.0	2	100	0	92	50	50	0	0	1.00
21233--21283	20	2.5	20	84	12	59	54	0	1	43	1.11
21239--21289	20	2.5	19	82	17	59	54	0	3	41	1.19
21643--21669	3	9.0	3	100	0	54	66	0	33	0	0.92
29128--29159	3	10.7	3	100	0	64	34	0	65	0	0.93
33319--33369	22	2.3	20	75	18	57	25	1	5	66	1.24
33385--33409	12	2.1	12	100	0	50	32	20	0	48	1.50
34802--34917	62	1.9	59	84	5	151	43	2	5	48	1.39
35912--36066	43	3.7	43	80	1	188	27	24	20	27	1.99
35913--36079	86	2.0	84	86	2	235	27	23	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35912--36089	43	4.2	42	77	7	155	28	24	18	28	1.98
36088--36125	18	2.1	18	100	0	76	52	5	5	36	1.47
36404--36470	21	3.2	21	82	0	71	4	41	14	38	1.67
41620--41772	41	3.7	41	72	6	139	26	24	24	24	2.00
43386--43449	31	2.0	31	82	8	76	56	0	4	39	1.20
44483--44537	18	3.1	18	74	10	60	43	0	0	56	0.99
44481--44534	17	3.2	17	80	10	58	38	0	0	61	0.96
48201--48261	25	2.4	27	81	10	74	44	9	11	34	1.74
49920--49956	17	2.2	18	85	9	51	21	21	0	56	1.42
50958--51001	21	2.1	21	83	8	54	45	2	0	52	1.13
52932--53232	59	5.1	57	80	9	302	40	1	22	34	1.64
52933--53232	88	3.4	87	84	6	342	41	1	22	34	1.64
52952--53199	29	8.5	28	81	7	271	42	0	21	34	1.59
55039--55071	11	2.8	12	86	9	50	60	3	0	36	1.12
55023--55087	29	2.3	28	81	2	76	55	4	4	35	1.41
55445--56021	49	11.7	49	70	11	333	17	23	19	39	1.92
55561--56021	99	4.7	99	86	3	599	17	24	19	39	1.92
63137--63372	58	4.1	58	80	6	228	37	2	25	34	1.71
63176--63392	29	7.5	29	73	11	124	38	2	23	35	1.69
63237--63425	28	6.6	28	76	9	148	39	3	23	33	1.71
64596--64628	3	11.0	3	100	0	66	66	0	0	33	0.92

Tables:   1

The End!