genome.fa.s13779.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013779.1 Kokia drynarioides strain JFW-HI SEQ_128807, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  168081

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2260--2312	28	1.9	27	88	3	79	64	3	30	1	1.22
2260--2318	27	2.2	27	81	6	75	64	3	30	1	1.20
15429--15489	31	2.0	31	100	0	122	9	16	16	57	1.64
24263--24341	37	2.1	37	81	9	90	30	30	13	25	1.94
24365--24437	38	1.9	38	86	2	103	32	24	13	28	1.94
28772--28900	37	3.5	37	85	1	177	27	24	20	27	1.99
28777--28950	74	2.3	73	81	3	188	28	26	17	27	1.98
30744--30777	17	2.0	17	94	0	59	26	11	44	17	1.83
31166--31224	21	2.8	21	84	0	73	33	20	15	30	1.93
36141--36171	16	1.9	16	93	0	53	61	0	16	22	1.34
37032--37102	37	1.9	37	88	0	106	30	15	25	28	1.96
37129--37215	37	2.4	37	73	7	95	26	18	26	28	1.98
47180--47245	30	2.2	28	84	7	78	59	13	0	27	1.35
47171--47279	51	2.1	52	84	5	141	63	11	0	24	1.28
48435--48520	31	2.9	29	77	8	93	34	10	10	44	1.73
51046--51102	24	2.3	26	82	11	84	45	12	17	24	1.83
52278--52324	16	2.9	15	77	22	51	72	10	0	17	1.12
58396--58434	6	6.5	6	87	0	51	23	30	0	46	1.53
61414--61449	12	2.9	12	91	4	54	50	0	11	38	1.38
63035--63135	20	4.9	21	72	12	61	47	13	4	33	1.65
70388--70420	15	2.2	15	100	0	66	15	54	12	18	1.71
80365--80405	17	2.4	17	84	11	57	26	12	4	56	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83576--83644	20	3.3	20	80	10	68	52	8	5	33	1.56
83713--83759	18	2.6	18	86	6	60	46	12	10	29	1.76
87203--87231	14	2.0	15	93	6	51	75	0	3	20	0.94
92867--93005	68	2.0	68	94	0	242	39	16	15	28	1.89
96963--97007	23	2.0	23	81	0	54	28	6	6	57	1.50
97688--97824	73	1.9	74	83	4	179	37	8	13	40	1.75
102934--102987	3	18.0	3	92	0	90	62	0	3	33	1.12
102980--103023	3	14.7	3	82	0	52	29	4	31	34	1.78
102980--103023	12	3.7	12	87	0	61	29	4	31	34	1.78
102986--103023	15	2.5	15	86	0	58	26	5	34	34	1.79
109559--109670	57	2.0	57	91	3	181	41	7	20	31	1.79
111083--111130	16	2.8	17	84	6	62	2	20	2	75	1.02
113051--113098	20	2.4	20	89	0	69	18	10	37	33	1.85
126730--126796	23	2.9	23	77	0	71	17	10	38	32	1.84
127844--127891	24	2.0	24	95	0	87	31	20	18	29	1.97
129307--129349	21	2.0	21	100	0	86	20	9	41	27	1.83
142422--142463	23	1.9	23	85	9	61	57	2	7	33	1.39
146185--146243	22	2.7	22	86	0	91	40	15	11	32	1.83
150497--150521	2	12.5	2	100	0	50	52	0	0	48	1.00
150573--150635	24	2.6	24	88	11	94	47	0	36	15	1.46
162833--162878	6	7.7	6	92	0	56	60	0	21	17	1.35
162832--162878	12	3.9	12	85	0	67	61	0	21	17	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
163036--163090	25	2.2	26	80	9	69	38	9	14	38	1.78
166781--166847	15	3.9	18	80	19	74	71	5	22	0	1.07
166782--166846	14	4.6	14	76	14	53	72	4	23	0	1.03
166782--166848	17	3.8	18	72	20	61	73	4	22	0	1.01

Tables:   1

The End!