Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013782.1 Kokia drynarioides strain JFW-HI SEQ_128810, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5684
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35


Found at i:3311 original size:13 final size:13

Alignment explanation


    Indices: 3277--3337  Score: 61
    Period size: 13  Copynumber: 4.6  Consensus size: 13

       3267 GTATAAAAAC

                         
       3277 TTCATATAATTAT
          1 TTCATATAATTAT

                           
       3290 TTCCATATAATTGA-
          1 TT-CATATAATT-AT

                    ***  
       3304 TTCATATACCCAT
          1 TTCATATAATTAT

                      *  
       3317 TTCATATAATCAT
          1 TTCATATAATTAT

                    
       3330 TTCATATA
          1 TTCATATA

       3338 CTTAACACAA


Statistics
Matches: 40,  Mismatches: 5, Indels: 6
        0.78            0.10        0.12

Matches are distributed among these distances:
  12    1  0.03
  13   27  0.68
  14   11  0.28
  15    1  0.03

ACGTcount: A:0.36, C:0.16, G:0.02, T:0.46


Consensus pattern (13 bp):   
TTCATATAATTAT

Found at i:4007 original size:6 final size:6

Alignment explanation


    Indices: 3996--4020  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

       3986 TTTCGTTCCA

                                         
       3996 TGAAAT TGAAAT TGAAAT TGAAAT T
          1 TGAAAT TGAAAT TGAAAT TGAAAT T

       4021 TATCAAGGTT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.48, C:0.00, G:0.16, T:0.36


Consensus pattern (6 bp):   
TGAAAT

Done.