Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013787.1 Kokia drynarioides strain JFW-HI SEQ_128815, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1704
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28


Found at i:317 original size:21 final size:21

Alignment explanation


    Indices: 291--333  Score: 68
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        281 TAGGGTTCAT

                  *      *       
        291 TTGCCCCGGAGGAGTAGAGTA
          1 TTGCCCAGGAGGAATAGAGTA

                                 
        312 TTGCCCAGGAGGAATAGAGTA
          1 TTGCCCAGGAGGAATAGAGTA

             
        333 T
          1 T

        334 CGCGATGGCT


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.28, C:0.16, G:0.35, T:0.21


Consensus pattern (21 bp):   
TTGCCCAGGAGGAATAGAGTA

Found at i:460 original size:45 final size:45

Alignment explanation


    Indices: 339--464  Score: 180
    Period size: 45  Copynumber: 2.8  Consensus size: 45

        329 AGTATCGCGA

                          *  *           **          *   
        339 TGGCTCGTCAAACTCAGCCTGATATCCTTCCCTTGAGTATTGCGG
          1 TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGAGTATTACGG

                        *     *                          
        384 TGGCTCGTCAAATTGAGGTTGATATCCTTGGCTTGAGTATTACGG
          1 TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGAGTATTACGG

                                      *         
        429 TGGCTCGTCAAACTGAGGCTGATATCTTTGGCTTGA
          1 TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGA

        465 TGAGCTATGC


Statistics
Matches: 71,  Mismatches: 10, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  45   71  1.00

ACGTcount: A:0.19, C:0.21, G:0.26, T:0.33


Consensus pattern (45 bp):   
TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGAGTATTACGG
Done.