Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013792.1 Kokia drynarioides strain JFW-HI SEQ_128820, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5224
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.34

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:783 original size:79 final size:79

Alignment explanation


    Indices: 652--844  Score: 316
    Period size: 79  Copynumber: 2.4  Consensus size: 79

        642 ATGATTCTAA

                                                     *                       
        652 CACCCAGTGCCTAGCA-GATAAACCACAAAAGTGAGCCCAGCTCTAGTTGGATTAACCAACAATA
          1 CACCCAGTGCCTAG-AGGATAAACCACAAAAGTGAGCCCAGATCTAGTTGGATTAACCAACAATA

                       *   
        716 TCCATCAAATCCTGG
         65 TCCATCAAATCATGG

                                                   *                         
        731 CACCCAGTGCCTAGAGGATAAACCACAAAAGTGAGCCCATATCTAGTTGGATTAACCAACAATAT
          1 CACCCAGTGCCTAGAGGATAAACCACAAAAGTGAGCCCAGATCTAGTTGGATTAACCAACAATAT

                          
        796 CCATCAAATCATGG
         66 CCATCAAATCATGG

                      *   *          *         
        810 CACCCAGTGCATAGCGGATAAACCAAAAAAGTGAG
          1 CACCCAGTGCCTAGAGGATAAACCACAAAAGTGAG

        845 TCTAACTCTT


Statistics
Matches: 107,  Mismatches: 6, Indels: 2
        0.93            0.05        0.02

Matches are distributed among these distances:
  78    1  0.01
  79  106  0.99

ACGTcount: A:0.38, C:0.26, G:0.18, T:0.18


Consensus pattern (79 bp):   
CACCCAGTGCCTAGAGGATAAACCACAAAAGTGAGCCCAGATCTAGTTGGATTAACCAACAATAT
CCATCAAATCATGG
Done.