genome.fa.s13793.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013793.1 Kokia drynarioides strain JFW-HI SEQ_128821, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80064

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
664--716	15	3.5	15	78	0	61	20	13	26	39	1.89
753--815	17	3.7	17	89	0	90	52	3	0	44	1.17
2797--2833	18	2.1	18	90	5	58	43	2	0	54	1.14
2813--2867	24	2.3	24	81	9	67	38	0	1	60	1.08
2813--2879	24	2.7	24	82	13	66	37	1	1	59	1.16
3617--3671	28	2.0	26	89	6	83	27	10	10	50	1.70
8387--8431	21	2.2	20	84	15	56	35	2	35	26	1.69
10888--10941	28	1.9	28	100	0	108	40	14	7	37	1.74
12412--12455	20	2.1	21	83	4	54	45	15	0	38	1.47
16962--17035	38	1.9	38	94	0	130	27	10	21	40	1.86
17841--17883	20	2.2	20	100	0	86	48	13	4	32	1.63
26221--26263	9	4.7	9	85	5	50	62	2	0	34	1.08
28350--28394	20	2.2	20	84	7	56	46	2	6	44	1.42
33200--33264	23	2.8	23	95	0	112	18	21	26	33	1.96
44356--44414	24	2.6	24	82	15	72	37	27	8	27	1.85
45270--45313	10	4.4	10	88	0	52	52	6	0	40	1.28
45287--45316	2	15.0	2	100	0	60	50	0	0	50	1.00
45314--45338	4	6.2	4	100	0	50	24	0	0	76	0.80
50034--50060	7	3.9	7	100	0	54	88	11	0	0	0.50
50990--51486	49	10.1	49	77	6	378	33	15	31	19	1.94
50990--51413	99	4.3	98	80	4	415	33	15	31	19	1.93
50989--51490	147	3.4	148	76	4	458	33	15	31	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51723--52136	42	10.1	42	83	3	434	25	28	16	28	1.97
51715--52127	164	2.5	165	84	3	496	26	28	15	29	1.96
52324--52484	85	1.9	85	85	2	225	37	14	23	24	1.92
52139--53235	208	5.2	208	85	3	1405	40	17	19	22	1.91
52741--52905	85	1.9	85	86	0	231	40	16	19	23	1.91
52826--52917	48	1.9	48	86	0	130	42	16	19	21	1.89
52151--53235	424	2.6	418	85	4	1431	39	17	20	22	1.92
54040--54095	2	28.0	2	83	7	69	48	3	1	46	1.30
54878--54990	30	3.8	30	77	11	115	40	18	4	36	1.71
54846--54962	60	2.0	60	81	10	141	39	18	4	37	1.71
58101--58151	26	2.0	26	88	0	75	35	1	27	35	1.68
58632--58711	39	2.0	40	92	2	135	30	21	17	31	1.96
58636--58728	39	2.4	38	83	7	98	30	22	17	30	1.96
66757--66790	3	11.3	3	100	0	68	32	0	0	67	0.91
72717--72796	31	2.6	30	82	2	97	22	16	21	40	1.91
78508--78546	17	2.3	17	86	8	53	46	23	12	17	1.83

Tables:   1

The End!