genome.fa.s13795.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013795.1 Kokia drynarioides strain JFW-HI SEQ_128823, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  203481

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7468--7501	2	17.0	2	100	0	68	50	0	0	50	1.00
9889--9943	24	2.3	24	83	0	74	34	1	7	56	1.38
11766--11817	23	2.3	23	89	0	77	15	19	25	40	1.90
11801--11951	23	6.4	23	71	14	101	14	23	17	44	1.86
20166--20191	2	13.0	2	100	0	52	50	50	0	0	1.00
20191--20232	2	21.0	2	100	0	84	50	0	0	50	1.00
26275--26334	31	1.9	31	83	6	77	36	15	10	38	1.80
31010--31036	4	6.8	4	100	0	54	77	22	0	0	0.76
33558--33592	3	11.7	3	100	0	70	65	0	34	0	0.93
34162--34194	16	2.0	17	88	5	50	36	0	0	63	0.95
34860--34891	13	2.3	15	89	10	50	62	0	3	34	1.11
39166--39224	27	2.1	27	84	12	75	38	6	0	54	1.27
55385--55420	17	2.1	17	100	0	72	5	19	16	58	1.58
60784--60831	14	3.0	17	73	17	57	35	0	0	64	0.94
61635--61682	21	2.3	20	85	3	69	66	4	0	29	1.10
82423--82523	41	2.5	41	90	0	157	29	19	33	16	1.94
82501--82545	22	2.0	22	95	0	81	33	24	31	11	1.90
82460--82586	63	2.0	63	86	3	175	31	20	32	15	1.94
82523--82639	41	2.9	41	85	0	162	29	20	30	18	1.97
82426--82620	104	1.9	104	90	0	309	31	19	32	16	1.94
91325--91363	18	2.1	18	85	4	51	56	7	2	33	1.41
101384--101409	7	3.7	7	100	0	52	30	0	46	23	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105328--105369	7	6.0	7	91	0	66	52	14	30	2	1.54
106334--106374	17	2.4	18	80	12	50	39	24	19	17	1.92
110102--110150	15	3.2	15	86	13	57	40	4	0	55	1.19
110116--110149	16	2.2	15	89	5	50	38	0	0	61	0.96
110166--110195	2	15.0	2	92	0	51	46	0	3	50	1.18
117592--117648	28	2.0	29	93	3	98	38	17	1	42	1.60
117861--117902	17	2.4	18	80	11	52	64	2	2	30	1.19
126969--127002	9	3.8	9	92	0	59	0	8	0	91	0.43
126969--127008	18	2.1	18	86	9	53	0	10	5	85	0.75
130984--131009	1	26.0	1	100	0	52	100	0	0	0	0.00
135978--136024	20	2.3	21	88	7	78	59	8	0	31	1.27
135978--136032	20	2.8	20	86	5	58	61	7	0	30	1.23
139356--139408	23	2.2	24	86	6	72	11	26	24	37	1.89
139353--139409	25	2.3	25	76	14	64	10	24	24	40	1.87
160222--160260	20	1.9	21	85	15	55	35	23	20	20	1.96
162976--163019	22	1.9	24	86	9	65	45	0	9	45	1.35
163117--163180	20	3.3	19	80	10	58	51	10	4	32	1.58
163241--163282	18	2.3	19	84	8	52	35	16	11	35	1.86
165117--165160	14	3.3	14	75	12	56	31	13	27	27	1.94
166328--166591	28	10.0	28	70	14	157	34	14	27	23	1.94
166378--166511	48	2.7	49	87	4	180	32	11	29	26	1.92
166521--166602	24	3.2	24	73	18	76	35	18	29	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166336--166625	128	2.2	128	84	3	357	33	14	27	23	1.94
166493--166619	52	2.4	52	85	0	182	34	18	28	18	1.95
170072--170115	11	3.9	11	85	5	61	61	2	0	36	1.09
171057--171081	2	12.5	2	100	0	50	52	0	0	48	1.00
173784--174149	24	15.2	24	73	3	166	37	14	25	22	1.92
173785--174149	48	7.6	48	76	10	293	37	14	25	22	1.92
173786--174153	96	3.8	95	79	3	355	37	14	25	22	1.92
173923--174154	72	3.2	72	76	12	226	37	14	25	22	1.92
174635--174739	52	2.0	52	86	0	147	34	12	24	28	1.92
180697--180774	29	2.7	30	76	6	88	39	2	16	41	1.62
182260--182789	270	2.0	270	95	0	961	23	13	26	36	1.92
183917--183981	29	2.2	29	83	8	87	20	24	3	52	1.61
183988--184125	3	46.0	3	100	0	276	0	33	0	66	0.92
185329--185373	12	3.7	12	88	5	72	40	8	2	48	1.47
187645--187694	15	3.5	15	70	10	50	50	8	14	28	1.70
191580--191903	163	2.0	163	90	0	513	32	17	14	35	1.90
194589--194615	2	13.5	2	100	0	54	51	0	0	48	1.00
194768--194813	18	2.6	18	82	3	58	43	4	4	47	1.42
195312--195402	40	2.2	42	86	7	125	51	5	2	40	1.37
195519--195591	20	3.6	19	76	9	65	50	2	0	46	1.15
197184--197220	17	2.1	17	90	5	56	54	0	0	45	1.00
199370--199409	19	2.2	19	86	4	55	52	20	10	17	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
203426--203451	2	13.0	2	100	0	52	50	0	50	0	1.00

Tables:   1

The End!