Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001380.1 Kokia drynarioides strain JFW-HI SEQ_112852, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3461
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.33


Found at i:1131 original size:8 final size:8

Alignment explanation


    Indices: 1116--1145  Score: 51
    Period size: 8  Copynumber: 3.8  Consensus size: 8

       1106 GAAAAATGAA

                    
       1116 AAGAAGAG
          1 AAGAAGAG

             *      
       1124 AGGAAGAG
          1 AAGAAGAG

                    
       1132 AAGAAGAG
          1 AAGAAGAG

                  
       1140 AAGAAG
          1 AAGAAG

       1146 GCAAGGCAAA


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   8   20  1.00

ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00


Consensus pattern (8 bp):   
AAGAAGAG

Found at i:1573 original size:18 final size:19

Alignment explanation


    Indices: 1550--1592  Score: 54
    Period size: 18  Copynumber: 2.4  Consensus size: 19

       1540 AAAACAAAGT

                       *       
       1550 TAAAAAATATATAA-TAAA
          1 TAAAAAATATAAAATTAAA

                  *            
       1568 TAAAAACTATAAAATTAAA
          1 TAAAAAATATAAAATTAAA

                   
       1587 -AAAAAA
          1 TAAAAAA

       1593 GTTTAAAAAA


Statistics
Matches: 21,  Mismatches: 3, Indels: 2
        0.81            0.12        0.08

Matches are distributed among these distances:
  18   17  0.81
  19    4  0.19

ACGTcount: A:0.74, C:0.02, G:0.00, T:0.23


Consensus pattern (19 bp):   
TAAAAAATATAAAATTAAA
Done.