Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013809.1 Kokia drynarioides strain JFW-HI SEQ_128837, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33848
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Warning! 45 characters in sequence are not A, C, G, or T
Found at i:5337 original size:9 final size:9
Alignment explanation
Indices: 5306--5429 Score: 56
Period size: 9 Copynumber: 12.6 Consensus size: 9
5296 CAAAATTATT
5306 ATTTTTT-A
1 ATTTTTTAA
*
5314 TTTTTTTGAA
1 ATTTTTT-AA
5324 TATTTTTTAA
1 -ATTTTTTAA
5334 ATTTTTTAA
1 ATTTTTTAA
* *
5343 A-ATCTTAA
1 ATTTTTTAA
5351 ATTTTTATATA
1 ATTTTT-TA-A
5362 A-TTTTTAGA
1 ATTTTTTA-A
5371 ATTTTTTTGTAA
1 A--TTTTT-TAA
*
5383 TTTTTTTAA
1 ATTTTTTAA
5392 ATATAAATTTTAAA
1 AT-T---TTTT-AA
5406 ATTTTTATAA
1 ATTTTT-TAA
*
5416 ATATTTTAA
1 ATTTTTTAA
5425 ATTTT
1 ATTTT
5430 AAAATTTATT
Statistics
Matches: 89, Mismatches: 11, Indels: 31
0.68 0.08 0.24
Matches are distributed among these distances:
8 12 0.13
9 27 0.30
10 25 0.28
11 9 0.10
12 5 0.06
13 7 0.08
14 4 0.04
ACGTcount: A:0.35, C:0.01, G:0.02, T:0.62
Consensus pattern (9 bp):
ATTTTTTAA
Found at i:5416 original size:18 final size:19
Alignment explanation
Indices: 5393--5429 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
5383 TTTTTTTAAA
5393 TATAAAT-TTTAAAATTTT
1 TATAAATATTTAAAATTTT
*
5411 TATAAATATTTTAAATTTT
1 TATAAATATTTAAAATTTT
5430 AAAATTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
TATAAATATTTAAAATTTT
Found at i:6659 original size:12 final size:12
Alignment explanation
Indices: 6642--6666 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6632 ATGATGTTAA
6642 AAATTAAATATT
1 AAATTAAATATT
6654 AAATTAAATATT
1 AAATTAAATATT
6666 A
1 A
6667 CATTTATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
AAATTAAATATT
Found at i:21007 original size:11 final size:11
Alignment explanation
Indices: 20991--21017 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
20981 GGCACGAGGT
20991 GGAAGGGGTGA
1 GGAAGGGGTGA
21002 GGAAGGGGTGA
1 GGAAGGGGTGA
21013 GGAAG
1 GGAAG
21018 AGCGGAAGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.63, T:0.07
Consensus pattern (11 bp):
GGAAGGGGTGA
Found at i:21957 original size:2 final size:2
Alignment explanation
Indices: 21950--21987 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
21940 ACATAGATAC
21950 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
21988 CTTCTAAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:23417 original size:19 final size:19
Alignment explanation
Indices: 23393--23429 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
23383 AAAGCATTGG
23393 CTCCCACATTTTTCTTACA
1 CTCCCACATTTTTCTTACA
23412 CTCCCACATTTTTCTTAC
1 CTCCCACATTTTTCTTAC
23430 TAACAATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.19, C:0.38, G:0.00, T:0.43
Consensus pattern (19 bp):
CTCCCACATTTTTCTTACA
Found at i:29926 original size:96 final size:96
Alignment explanation
Indices: 29753--29933 Score: 253
Period size: 96 Copynumber: 1.9 Consensus size: 96
29743 GGATGTTTCT
*
29753 ATTATCTCGATTTGAAGAAAGGTTGCACCTAGTAAGTTAAGGCGCAAATTTTCAGAATCGAAGAT
1 ATTATCTCGATTTGAAGAAAGATTGCACCTAGTAAGTTAAGGCGCAAATTTTCAGAATCGAAGAT
*
29818 AAGGAAACATTGCCTCGATTAAGGGTATTCG
66 AAAGAAACATTGCCTCGATTAAGGGTATTCG
* *
29849 ATTATTTCGATTTGAAGAGAA-ATTGCACCTAGTAAGTTAAGGCGCAAATTTT-TGAAACTCGAA
1 ATTATCTCGATTTGAAGA-AAGATTGCACCTAGTAAGTTAAGGCGCAAATTTTCAG-AA-TCGAA
*
29912 -ATAAA-AGAATATTGCCTCGATT
63 GATAAAGA-AACATTGCCTCGATT
29934 TAAAGTTTTT
Statistics
Matches: 76, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
95 2 0.03
96 67 0.88
97 7 0.09
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (96 bp):
ATTATCTCGATTTGAAGAAAGATTGCACCTAGTAAGTTAAGGCGCAAATTTTCAGAATCGAAGAT
AAAGAAACATTGCCTCGATTAAGGGTATTCG
Found at i:30353 original size:28 final size:29
Alignment explanation
Indices: 30283--30386 Score: 113
Period size: 30 Copynumber: 3.5 Consensus size: 29
30273 ATTCGGGGGT
** *
30283 AAAATGGTAATTTTTGAGCGTTTTGGGGTCA
1 AAAATGG-AATTTTTGAAAG-TTCGGGGTCA
30314 AAAATGGAATTTTTGAAA-TTCGAGGGT-A
1 AAAATGGAATTTTTGAAAGTTCG-GGGTCA
* *
30342 AAAATGTAATTTTTGAAAGTTTTGGGGTCA
1 AAAATGGAATTTTTGAAAG-TTCGGGGTCA
30372 AAAATGGAATTTTTG
1 AAAATGGAATTTTTG
30387 GATAGTTTAG
Statistics
Matches: 63, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
28 21 0.33
29 8 0.13
30 27 0.43
31 7 0.11
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.38
Consensus pattern (29 bp):
AAAATGGAATTTTTGAAAGTTCGGGGTCA
Found at i:30356 original size:58 final size:58
Alignment explanation
Indices: 30160--30386 Score: 214
Period size: 58 Copynumber: 3.9 Consensus size: 58
30150 TTTGGATACC
* * * ** *
30160 CGAGGGAAAAATGGTAATTTTGGAAA-ATTTGGGGTTTAAAATGGAATTTTCT-ACA-T
1 CGAGGGTAAAATGGTAATTTTTGAAAGTTTTGGGGTCAAAAATGGAATTTT-TGAAATT
* ** * ***
30216 CCATGGGTAAAATGGTAATTTTTAGAAA-AATTGGGAT-AAAAATGGAATTTTAGTTTCATT
1 CGA-GGGTAAAATGGTAATTTTT-GAAAGTTTTGGGGTCAAAAATGGAATTTT--TGAAATT
* **
30276 CGGGGGTAAAATGGTAATTTTTGAGCGTTTTGGGGTCAAAAATGGAATTTTTGAAATT
1 CGAGGGTAAAATGGTAATTTTTGAAAGTTTTGGGGTCAAAAATGGAATTTTTGAAATT
30334 CGAGGGTAAAAAT-GTAATTTTTGAAAGTTTTGGGGTCAAAAATGGAATTTTTG
1 CGAGGGT-AAAATGGTAATTTTTGAAAGTTTTGGGGTCAAAAATGGAATTTTTG
30387 GATAGTTTAG
Statistics
Matches: 142, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
56 2 0.01
57 30 0.21
58 62 0.44
59 32 0.23
60 16 0.11
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (58 bp):
CGAGGGTAAAATGGTAATTTTTGAAAGTTTTGGGGTCAAAAATGGAATTTTTGAAATT
Found at i:32228 original size:18 final size:18
Alignment explanation
Indices: 32194--32248 Score: 76
Period size: 18 Copynumber: 3.1 Consensus size: 18
32184 AATCATTCCG
*
32194 AATTTA-AACTAAATTTA
1 AATTTATAAATAAATTTA
*
32211 AATTTATAAATTAATTTA
1 AATTTATAAATAAATTTA
*
32229 AATTTATGAATAAATTTA
1 AATTTATAAATAAATTTA
32247 AA
1 AA
32249 ACCAATTTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
17 6 0.18
18 27 0.82
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (18 bp):
AATTTATAAATAAATTTA
Found at i:33059 original size:201 final size:201
Alignment explanation
Indices: 32597--33644 Score: 1255
Period size: 201 Copynumber: 5.2 Consensus size: 201
32587 TGATTTGACC
* * * ** ** ** * *
32597 TTCTTCTCAGTATCTTATCAGAAAGATGACCATATCACTTGTTTTGATCTACTTCTCTGTGTTTC
1 TTCTTCTCTGTATCTCATCAGGAAGATGACCGCATCACTTGTTTCAATCCGCTTCTCTGTATCTC
* * * * * * *
32662 ATCAAGAAGACGGATTTGGTTCACTTCTCAGTATTTCAACAGGAAGCTAACCA-TTTGTTGCTTT
66 ATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTC
*
32726 GATCTGCTTCTCAGTATCTCATCAGGAAGCTAGG-GTTCGAAGATTTGCTCACATCGAGCGTGGG
131 GACCTGCTTCTCAGTATCTCATCAGGAAGCT-GGAGTTCGAAGATTTGCTCACATCGAGC-----
** * *
32790 TTTGATTTGGTC
190 CCTGAGTTGGTA
** * *
32802 TTCTTCTCAATATCTCATCAGGAAGATGACCGTATCGCTTGTTTCAATCCGCTTCTCTGTATCTC
1 TTCTTCTCTGTATCTCATCAGGAAGATGACCGCATCACTTGTTTCAATCCGCTTCTCTGTATCTC
* *
32867 ATCAGGAAGACAAATTTGGTCCACTTATCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTC
66 ATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTC
* * * *
32932 GACATGCTTCTCAGTATCTCATCAGGAAGTTGGAGTTTGAAGATTTGCTCACATCAAGCCCTGAG
131 GACCTGCTTCTCAGTATCTCATCAGGAAGCTGGAGTTCGAAGATTTGCTCACATCGAGCCCTGAG
32997 TTGGTA
196 TTGGTA
* * * * *
33003 TTCTTCTCTGTATCTCATTAGGAAGATGATCGCCTTACTTATTTCAATCCGCTTCTCTGTATCTC
1 TTCTTCTCTGTATCTCATCAGGAAGATGACCGCATCACTTGTTTCAATCCGCTTCTCTGTATCTC
* * *
33068 ATCAAGAAGACGAATTTGGTCCACTTCTCAGTATCTTATCAGGAAGCTAACCTTTTTATTGCTTC
66 ATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTC
* * * *
33133 GCCCTTCTT-TTAGTATCTCATCAGGAAGCT-GAGTTTCGAAGATTTGCTCACATTGAGCGTGGG
131 GACCTGCTTCTCAGTATCTCATCAGGAAGCTGGAG-TTCGAAGATTTGCTCACATCGAGC-----
** * *
33196 TTTGATTTGGTC
190 CCTGAGTTGGTA
* * * * *
33208 TTCTTCTCAGTATCTCATCAAGAAGGTGACCGCATCGCTTGTTTCAATCCGCTTCTTTGTATCTC
1 TTCTTCTCTGTATCTCATCAGGAAGATGACCGCATCACTTGTTTCAATCCGCTTCTCTGTATCTC
* * * * *
33273 ATCAGGAAGACAAATTTGGTTCACTTCTCAGTATCTCATTAGGAAGCTAACAATTTTATTGCTTT
66 ATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTC
* * * * *
33338 GACCTGTTTCTCAATATCTCATCAGGAAGCTAGAGTTCGAAGATTTGCTCGCATTGAG-CCTCGA
131 GACCTGCTTCTCAGTATCTCATCAGGAAGCTGGAGTTCGAAGATTTGCTCACATCGAGCCCT-GA
33402 GTTGGTA
195 GTTGGTA
* * *
33409 TTCTTCTTTGTATCTCATTAGGAAGATGACCGCCTCACTTGTTTCAATCCGCTTCTCTGTATCTC
1 TTCTTCTCTGTATCTCATCAGGAAGATGACCGCATCACTTGTTTCAATCCGCTTCTCTGTATCTC
* *
33474 ATCAGAAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACC-TTTTATTGTTTC
66 ATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTC
* *
33538 GCCCTACTTCTCAGTATCTCATCAGGAAGCTGG-GATTCGAAGATTTGCTCACATCGAGCCCTGA
131 GACCTGCTTCTCAGTATCTCATCAGGAAGCTGGAG-TTCGAAGATTTGCTCACATCGAGCCCTGA
*
33602 GTTGATA
195 GTTGGTA
* *
33609 TACTTCTCTATATCTCATCAGGAAGATGACCGCATC
1 TTCTTCTCTGTATCTCATCAGGAAGATGACCGCATC
33645 GCTGTTTATG
Statistics
Matches: 719, Mismatches: 111, Indels: 31
0.84 0.13 0.04
Matches are distributed among these distances:
199 4 0.01
200 139 0.19
201 244 0.34
205 228 0.32
206 101 0.14
207 3 0.00
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.36
Consensus pattern (201 bp):
TTCTTCTCTGTATCTCATCAGGAAGATGACCGCATCACTTGTTTCAATCCGCTTCTCTGTATCTC
ATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTC
GACCTGCTTCTCAGTATCTCATCAGGAAGCTGGAGTTCGAAGATTTGCTCACATCGAGCCCTGAG
TTGGTA
Found at i:33291 original size:205 final size:205
Alignment explanation
Indices: 32586--33644 Score: 1224
Period size: 205 Copynumber: 5.2 Consensus size: 205
32576 TCTGGTTTCA
** * * ** ** **
32586 TTGATTTGACCTTCTTCTCAGTATCTTATCAGAAAGATGACCATATCACTTGTTTTGATCTACTT
1 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTCAATCCGCTT
* * * * * * * *
32651 CTCTGTGTTTCATCAAGAAGACGGATTTGGTTCACTTCTCAGTATTTCAACAGGAAGCTAACCAT
66 CTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCTT
* * * *
32716 TTGTTGCTTTGATCTGCTTCTCAGTATCTCATCAGGAAGCT-AGGGTTCGAAGATTTGCTCACAT
131 TTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGA-GTTTCGAAGATTTGCTCACAT
32780 CGAGCGTGGGT
195 CGAGCGTGGGT
* * *
32791 TTGATTTGGTCTTCTTCTCAATATCTCATCAGGAAGATGACCGTATCGCTTGTTTCAATCCGCTT
1 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTCAATCCGCTT
* *
32856 CTCTGTATCTCATCAGGAAGACAAATTTGGTCCACTTATCAGTATCTCATCAGGAAGCTAACCAT
66 CTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACC-T
* *
32921 TTTATTGCTTCGACATGCTTCTCAGTATCTCATCAGGAAGTTGGAGTTT-GAAGATTTGCTCACA
130 TTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCT-GAGTTTCGAAGATTTGCTCACA
* *
32985 TCAAGC-----C
194 TCGAGCGTGGGT
* * * * * * * * *
32992 CTGAGTTGGTATTCTTCTCTGTATCTCATTAGGAAGATGATCGCCTTACTTATTTCAATCCGCTT
1 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTCAATCCGCTT
* *
33057 CTCTGTATCTCATCAAGAAGACGAATTTGGTCCACTTCTCAGTATCTTATCAGGAAGCTAACCTT
66 CTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACC-T
* * *
33122 TTTATTGCTTCGCCCTTCTT-TTAGTATCTCATCAGGAAGCTGAGTTTCGAAGATTTGCTCACAT
130 TTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGAGTTTCGAAGATTTGCTCACAT
*
33186 TGAGCGTGGGT
195 CGAGCGTGGGT
* * *
33197 TTGATTTGGTCTTCTTCTCAGTATCTCATCAAGAAGGTGACCGCATCGCTTGTTTCAATCCGCTT
1 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTCAATCCGCTT
* * * * *
33262 CTTTGTATCTCATCAGGAAGACAAATTTGGTTCACTTCTCAGTATCTCATTAGGAAGCTAACAAT
66 CTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAAC-CT
* * * *
33327 TTTATTGCTTTGACCTGTTTCTCAATATCTCATCAGGAAGCTAGAG-TTCGAAGATTTGCTCGCA
130 TTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCT-GAGTTTCGAAGATTTGCTCACA
* * *
33391 TTGAGCCTCGAG-
194 TCGAGCGT-GGGT
* * * *
33403 TTGGTAT--TCTTCTT-T--GTATCTCATTAGGAAGATGACCGCCTCACTTGTTTCAATCCGCTT
1 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTCAATCCGCTT
*
33463 CTCTGTATCTCATCAGAAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCTT
66 CTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCTT
* * * * *
33528 TTATTGTTTCGCCCTACTTCTCAGTATCTCATCAGGAAGCTGGGATTCGAAGATTTGCTCACATC
131 TTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGAGTTTCGAAGATTTGCTCACATC
* *
33593 GAGCCCTGAG-
196 GAG-CGTGGGT
* *
33603 TTGATAT--ACTTC-TCT-A-TATCTCATCAGGAAGATGACCGCATC
1 TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATC
33645 GCTGTTTATG
Statistics
Matches: 729, Mismatches: 108, Indels: 39
0.83 0.12 0.04
Matches are distributed among these distances:
199 9 0.01
200 134 0.18
201 230 0.32
203 1 0.00
204 7 0.01
205 234 0.32
206 105 0.14
207 8 0.01
208 1 0.00
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (205 bp):
TTGATTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCACTTGTTTCAATCCGCTT
CTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCTT
TTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGAGTTTCGAAGATTTGCTCACATC
GAGCGTGGGT
Found at i:33358 original size:406 final size:406
Alignment explanation
Indices: 32648--33651 Score: 1447
Period size: 406 Copynumber: 2.5 Consensus size: 406
32638 TTTTGATCTA
* * * * *
32648 CTTCTCTGTGTTTCATCAAGAAGACGGATTTGGTTCACTTCTCAGTAT-TTCAACAGGAAGCTAA
1 CTTCTCTGTATCTCATCAAGAAGACGAATTTGGTCCACTTCTCAGTATCTT-ATCAGGAAGCTAA
* * * ** * *
32712 CCATTTGTTGCTTTGATCTGCTTCTCAGTATCTCATCAGGAAGCT-AGGGTTCGAAGATTTGCTC
65 CCTTTTATTGCTTCGCCCTACTTCTCAGTATCTCATCAGGAAGCTGA-GATTCGAAGATTTGCTC
* *
32776 ACATCGAGCGTGGGTTTGATTTGGTCTTCTTCTCAATATCTCATCAGGAAGATGACCGTATCGCT
129 ACATCGAGCGTGGGTTTGATTTGGTCTTCTTCTCAATATCTCATCAAGAAGATGACCGCATCGCT
32841 TGTTTCAATCCGCTTCTCTGTATCTCATCAGGAAGACAAATTTGGTCCACTTATCAGTATCTCAT
194 TGTTTCAATCCGCTTCTCTGTATCTCATCAGGAAGACAAATTTGGTCCACTTATCAGTATCTCAT
* * * * *
32906 CAGGAAGCTAACCATTTTATTGCTTCGACATGCTTCTCAGTATCTCATCAGGAAGTTGGAGTTTG
259 CAGGAAGCTAACAATTTTATTGCTTCGACATGCTTCTCAATATCTCATCAGGAAGCTAGAGTTCG
*
32971 AAGATTTGCTCACATCAAGCC-CTGAGTTGGTATTCTTCTCTGTATCTCATTAGGAAGATGATCG
324 AAGATTTGCTCACATCAAGCCTC-GAGTTGGTATTCTTCTCTGTATCTCATTAGGAAGATGACCG
*
33035 CCTTACTTATTTCAATCCG
388 CCTCACTTATTTCAATCCG
33054 CTTCTCTGTATCTCATCAAGAAGACGAATTTGGTCCACTTCTCAGTATCTTATCAGGAAGCTAAC
1 CTTCTCTGTATCTCATCAAGAAGACGAATTTGGTCCACTTCTCAGTATCTTATCAGGAAGCTAAC
* * *
33119 CTTTTTATTGCTTCGCCCTTCTT-TTAGTATCTCATCAGGAAGCTGAGTTTCGAAGATTTGCTCA
66 C-TTTTATTGCTTCGCCCTACTTCTCAGTATCTCATCAGGAAGCTGAGATTCGAAGATTTGCTCA
* * *
33183 CATTGAGCGTGGGTTTGATTTGGTCTTCTTCTCAGTATCTCATCAAGAAGGTGACCGCATCGCTT
130 CATCGAGCGTGGGTTTGATTTGGTCTTCTTCTCAATATCTCATCAAGAAGATGACCGCATCGCTT
* * * *
33248 GTTTCAATCCGCTTCTTTGTATCTCATCAGGAAGACAAATTTGGTTCACTTCTCAGTATCTCATT
195 GTTTCAATCCGCTTCTCTGTATCTCATCAGGAAGACAAATTTGGTCCACTTATCAGTATCTCATC
* * *
33313 AGGAAGCTAACAATTTTATTGCTTTGACCTGTTTCTCAATATCTCATCAGGAAGCTAGAGTTCGA
260 AGGAAGCTAACAATTTTATTGCTTCGACATGCTTCTCAATATCTCATCAGGAAGCTAGAGTTCGA
* ** *
33378 AGATTTGCTCGCATTGAGCCTCGAGTTGGTATTCTTCTTTGTATCTCATTAGGAAGATGACCGCC
325 AGATTTGCTCACATCAAGCCTCGAGTTGGTATTCTTCTCTGTATCTCATTAGGAAGATGACCGCC
*
33443 TCACTTGTTTCAATCCG
390 TCACTTATTTCAATCCG
*
33460 CTTCTCTGTATCTCATC-AGAAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAA
1 CTTCTCTGTATCTCATCAAG-AAGACGAATTTGGTCCACTTCTCAGTATCTTATCAGGAAGCTAA
* *
33524 CCTTTTATTGTTTCGCCCTACTTCTCAGTATCTCATCAGGAAGCTGGGATTCGAAGATTTGCTCA
65 CCTTTTATTGCTTCGCCCTACTTCTCAGTATCTCATCAGGAAGCTGAGATTCGAAGATTTGCTCA
* * * * *
33589 CATCGAGCCCTGAG-TTGATAT--ACTTC-TCT--ATATCTCATCAGGAAGATGACCGCATCGC-
130 CATCGAG-CGTGGGTTTGATTTGGTCTTCTTCTCAATATCTCATCAAGAAGATGACCGCATCGCT
33647 TGTTT
194 TGTTT
33652 ATGGATAATC
Statistics
Matches: 540, Mismatches: 51, Indels: 20
0.88 0.08 0.03
Matches are distributed among these distances:
400 5 0.01
401 26 0.05
403 3 0.01
404 4 0.01
405 21 0.04
406 458 0.85
407 23 0.04
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.36
Consensus pattern (406 bp):
CTTCTCTGTATCTCATCAAGAAGACGAATTTGGTCCACTTCTCAGTATCTTATCAGGAAGCTAAC
CTTTTATTGCTTCGCCCTACTTCTCAGTATCTCATCAGGAAGCTGAGATTCGAAGATTTGCTCAC
ATCGAGCGTGGGTTTGATTTGGTCTTCTTCTCAATATCTCATCAAGAAGATGACCGCATCGCTTG
TTTCAATCCGCTTCTCTGTATCTCATCAGGAAGACAAATTTGGTCCACTTATCAGTATCTCATCA
GGAAGCTAACAATTTTATTGCTTCGACATGCTTCTCAATATCTCATCAGGAAGCTAGAGTTCGAA
GATTTGCTCACATCAAGCCTCGAGTTGGTATTCTTCTCTGTATCTCATTAGGAAGATGACCGCCT
CACTTATTTCAATCCG
Done.