Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013813.1 Kokia drynarioides strain JFW-HI SEQ_128841, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13668
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:1460 original size:22 final size:23

Alignment explanation


    Indices: 1417--1469  Score: 63
    Period size: 22  Copynumber: 2.3  Consensus size: 23

       1407 TACTTCGTGT

                          *        
       1417 GCCTACTGATTTGCGCTATGTGC
          1 GCCTACTGATTTGCACTATGTGC

                             *    *
       1440 GCCTACTGA-TTGCACTGTGTGT
          1 GCCTACTGATTTGCACTATGTGC

              *     
       1462 GCTTACTG
          1 GCCTACTG

       1470 TTTCCTAGCA


Statistics
Matches: 26,  Mismatches: 4, Indels: 1
        0.84            0.13        0.03

Matches are distributed among these distances:
  22   17  0.65
  23    9  0.35

ACGTcount: A:0.13, C:0.25, G:0.26, T:0.36


Consensus pattern (23 bp):   
GCCTACTGATTTGCACTATGTGC

Found at i:7733 original size:22 final size:23

Alignment explanation


    Indices: 7690--7742  Score: 63
    Period size: 22  Copynumber: 2.3  Consensus size: 23

       7680 TACTTCGTGT

                          *        
       7690 GCCTACTGATTTGCGCTATGTGC
          1 GCCTACTGATTTGCACTATGTGC

                             *    *
       7713 GCCTACTGA-TTGCACTGTGTGT
          1 GCCTACTGATTTGCACTATGTGC

              *     
       7735 GCTTACTG
          1 GCCTACTG

       7743 TTTCCTAGCA


Statistics
Matches: 26,  Mismatches: 4, Indels: 1
        0.84            0.13        0.03

Matches are distributed among these distances:
  22   17  0.65
  23    9  0.35

ACGTcount: A:0.13, C:0.25, G:0.26, T:0.36


Consensus pattern (23 bp):   
GCCTACTGATTTGCACTATGTGC
Done.