Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013815.1 Kokia drynarioides strain JFW-HI SEQ_128843, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2582
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.33

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:97 original size:25 final size:23

Alignment explanation


    Indices: 53--102  Score: 82
    Period size: 23  Copynumber: 2.2  Consensus size: 23

         43 ACACTAGCGC

                     *             
         53 GCTCTCTGATTAGCACTGTGTGT
          1 GCTCTCTGAGTAGCACTGTGTGT

                             *     
         76 GCTCTCTGAGTAGCACTTTGTGT
          1 GCTCTCTGAGTAGCACTGTGTGT

                
         99 GCTC
          1 GCTC

        103 AGTACTTTGT


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  23   25  1.00

ACGTcount: A:0.12, C:0.24, G:0.26, T:0.38


Consensus pattern (23 bp):   
GCTCTCTGAGTAGCACTGTGTGT

Found at i:136 original size:23 final size:23

Alignment explanation


    Indices: 106--195  Score: 80
    Period size: 23  Copynumber: 3.9  Consensus size: 23

         96 TGTGCTCAGT

                                   
        106 ACTTTGTGTACTCTCTGTTTAGC
          1 ACTTTGTGTACTCTCTGTTTAGC

                     *            *   
        129 ACTTTGTGTGCTCTCTGTTGCCCAGC
          1 ACTTTGTGTACTCTCTGTT---TAGC

                                   *
        155 ACTTATGTG--CTCTCTGTTTAGT
          1 ACTT-TGTGTACTCTCTGTTTAGC

                                 
        177 A-TTTCG-GTACTCTCTGTTT
          1 ACTTT-GTGTACTCTCTGTTT

        196 GTTCCATTTA


Statistics
Matches: 56,  Mismatches: 4, Indels: 15
        0.75            0.05        0.20

Matches are distributed among these distances:
  20    2  0.04
  21    3  0.05
  22   13  0.23
  23   18  0.32
  25    9  0.16
  26    7  0.12
  27    4  0.07

ACGTcount: A:0.11, C:0.23, G:0.19, T:0.47


Consensus pattern (23 bp):   
ACTTTGTGTACTCTCTGTTTAGC
Done.