Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013820.1 Kokia drynarioides strain JFW-HI SEQ_128848, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3176
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.35

Warning! 100 characters in sequence are not A, C, G, or T


Found at i:2726 original size:4 final size:4

Alignment explanation


    Indices: 2705--2769  Score: 62
    Period size: 4  Copynumber: 16.0  Consensus size: 4

       2695 ACAGATTACT

                                             *   *      *                
       2705 TTTC TTTTC TTT- TTTC TTTC TTTCC TCTC CTTC TTCC TTTC TTTC TTTC
          1 TTTC -TTTC TTTC TTTC TTTC TTT-C TTTC TTTC TTTC TTTC TTTC TTTC

                                
       2754 TTTTC TTT- TTTC TTTC
          1 -TTTC TTTC TTTC TTTC

       2770 CCGTTTATTT


Statistics
Matches: 50,  Mismatches: 6, Indels: 9
        0.77            0.09        0.14

Matches are distributed among these distances:
   3    6  0.12
   4   33  0.66
   5   11  0.22

ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72


Consensus pattern (4 bp):   
TTTC
Done.