genome.fa.s13823.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013823.1 Kokia drynarioides strain JFW-HI SEQ_128851, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125980

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
591--646	15	3.7	15	79	9	60	16	8	26	48	1.75
678--756	16	4.8	16	75	7	68	54	3	0	41	1.18
9912--9945	17	2.1	17	88	5	52	17	23	26	32	1.97
10093--10242	28	5.3	27	81	7	158	34	13	23	29	1.93
10093--10247	58	2.7	58	83	6	190	34	12	22	29	1.92
10093--10270	28	6.3	28	78	12	109	34	13	23	28	1.93
10309--10385	27	2.9	27	98	0	145	44	14	18	23	1.86
17263--17303	18	2.3	19	87	8	59	41	0	2	56	1.13
17295--17324	15	2.0	15	100	0	60	33	0	0	66	0.92
18193--18642	165	2.7	162	86	5	575	40	11	15	32	1.83
20175--20199	2	12.5	2	100	0	50	52	0	0	48	1.00
21287--21357	30	2.3	31	92	2	117	26	15	11	46	1.79
21589--21663	30	2.5	30	86	2	96	44	13	17	25	1.85
23758--23806	19	2.4	20	86	10	64	32	0	8	59	1.27
26143--26187	23	1.9	24	90	4	74	35	15	0	48	1.45
26797--27227	122	3.5	123	78	8	407	42	16	22	18	1.89
26667--27329	40	16.2	40	71	11	254	42	16	22	18	1.89
26627--27297	326	2.1	326	88	1	1006	42	17	21	18	1.89
26708--27323	82	7.5	82	74	7	432	42	16	22	18	1.89
30661--30706	23	1.9	25	91	8	78	67	2	0	30	1.03
30682--30716	19	1.9	17	88	11	52	65	2	0	31	1.07
30861--30900	21	1.9	21	85	10	55	50	5	0	45	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30875--30924	8	6.0	8	77	9	55	46	0	0	54	1.00
30875--30950	34	2.2	34	92	0	125	48	3	0	47	1.20
30913--30968	26	2.2	26	93	6	96	51	10	0	37	1.37
31177--31203	6	4.5	6	100	0	54	55	14	0	29	1.40
31556--31650	17	5.5	17	87	1	127	40	0	5	54	1.23
31571--31644	6	12.8	6	71	13	57	40	0	4	55	1.19
32268--32312	11	4.3	11	76	21	51	35	2	2	60	1.22
32958--33405	224	2.0	224	98	0	860	26	18	16	38	1.92
33734--34178	29	15.3	28	70	13	213	35	25	4	34	1.76
33748--33968	88	2.5	88	83	4	268	36	23	4	35	1.76
33780--34179	146	2.7	147	84	3	531	36	24	4	34	1.75
33690--34224	87	6.1	87	76	12	345	37	23	4	34	1.76
33985--34224	58	4.1	60	80	10	227	37	23	5	33	1.78
34141--34236	29	3.3	29	77	2	86	32	25	6	36	1.81
34475--34758	97	3.0	96	86	4	391	26	19	17	36	1.94
40632--40765	66	2.0	66	85	2	180	41	18	25	14	1.89
41039--41180	43	3.3	42	84	3	176	30	14	26	28	1.95
42268--42479	29	7.5	29	77	10	181	49	8	4	37	1.54
42272--42427	80	1.9	82	84	5	210	46	8	4	39	1.55
44170--44197	13	2.2	13	100	0	56	57	0	28	14	1.38
45088--45141	28	1.9	28	88	0	81	22	29	14	33	1.94
51133--51201	22	3.1	22	79	8	86	47	10	2	39	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51177--51282	29	3.7	29	88	0	167	50	8	2	38	1.48
51921--51994	37	2.0	37	97	0	139	37	25	16	20	1.93
63471--63515	23	2.0	23	86	0	63	31	13	20	35	1.91
71329--71373	17	2.6	17	82	6	56	2	17	0	80	0.82
71954--71999	18	2.6	18	89	3	67	56	13	10	19	1.66
94234--94276	18	2.4	18	88	0	59	16	34	0	48	1.46
95085--95168	3	28.7	3	81	4	91	58	0	40	1	1.06
95192--95709	147	3.6	147	84	7	565	33	1	13	51	1.51
95749--95808	26	2.4	25	88	2	84	26	0	5	68	1.10
95748--95808	25	2.3	26	88	5	88	26	0	4	68	1.09
97629--97709	32	2.5	33	83	4	101	19	45	11	23	1.82
102905--102942	17	2.2	18	85	4	51	26	7	15	50	1.72
110242--110293	21	2.5	21	81	12	63	30	26	15	26	1.96
114432--114496	33	1.9	35	84	12	91	58	0	9	32	1.30
114466--114514	26	1.9	25	91	4	80	59	0	6	34	1.22
114754--114788	14	2.6	13	82	8	52	31	0	5	62	1.18
122370--122403	18	1.9	18	88	5	52	35	2	5	55	1.39

Tables:   1

The End!