genome.fa.s13828.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013828.1 Kokia drynarioides strain JFW-HI SEQ_128856, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  163701

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3556--4002	195	2.3	193	82	6	528	27	19	26	25	1.99
12085--12114	13	2.3	13	94	0	51	10	10	0	80	0.92
15868--15911	21	2.2	20	83	4	52	52	22	6	18	1.69
17198--17431	30	7.9	29	77	9	177	37	23	3	35	1.74
17198--17431	59	4.0	58	72	9	186	37	23	3	35	1.74
17300--17455	60	2.6	59	78	12	149	37	25	2	34	1.70
17318--17475	30	5.2	31	76	11	89	35	25	2	36	1.70
17529--17600	28	2.5	30	80	10	80	37	22	2	37	1.69
17559--17622	30	2.2	30	86	5	87	40	20	1	37	1.62
23416--23474	3	19.7	3	74	19	52	69	0	28	1	0.98
23413--23474	21	3.0	21	77	15	74	69	0	29	1	0.98
37347--37410	24	2.6	24	76	9	67	50	15	15	18	1.79
37236--37532	92	3.2	91	77	11	293	43	12	21	22	1.86
37237--37532	91	3.2	90	77	10	305	42	12	21	22	1.86
38106--38169	33	2.0	32	87	9	94	45	6	3	45	1.44
38106--38172	34	2.0	34	82	5	82	47	5	2	43	1.43
39512--39565	27	2.0	27	100	0	108	44	7	18	29	1.77
43893--43927	18	1.9	18	94	0	61	25	20	22	31	1.98
48479--48506	2	14.0	2	100	0	56	0	50	0	50	1.00
51374--51565	87	2.2	87	78	5	201	34	14	21	29	1.93
58433--58481	17	2.8	17	81	3	53	57	10	12	20	1.64
58566--58614	20	2.5	19	83	3	62	0	28	14	57	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58886--58943	27	2.1	28	84	9	75	5	34	0	60	1.19
60157--60360	101	2.0	101	97	0	381	43	5	32	18	1.73
60635--60659	13	1.9	13	100	0	50	64	8	12	16	1.49
69606--69649	23	2.0	22	86	4	61	45	15	0	38	1.47
80413--80456	23	2.0	22	86	4	61	45	15	0	38	1.47
84026--84085	29	2.1	29	100	0	120	20	13	26	40	1.89
94353--94381	14	2.0	15	93	6	51	62	0	34	3	1.12
94800--94835	17	2.2	17	90	5	56	19	11	13	55	1.68
106108--106151	18	2.3	19	84	7	63	65	6	22	4	1.35
122624--122682	29	2.0	29	100	0	118	23	23	16	35	1.95
124093--124136	21	2.1	21	100	0	88	31	29	9	29	1.88
127371--127428	28	2.0	27	83	9	71	48	1	1	48	1.22
127360--127439	29	2.7	31	74	16	78	51	1	2	45	1.22
127430--127485	22	2.5	22	77	11	60	60	0	0	39	0.97
128469--128525	20	2.8	19	80	17	62	33	3	0	63	1.12
128479--128514	18	2.0	19	89	10	58	36	0	0	63	0.94
140494--140523	15	2.0	15	93	0	51	43	0	0	56	0.99
142540--142631	31	3.0	31	79	3	87	44	10	6	38	1.65
146081--146160	41	2.0	41	87	0	115	22	2	10	65	1.35
146137--146162	12	2.2	12	100	0	52	23	0	7	69	1.14
146157--146204	26	1.9	24	87	8	69	39	2	4	54	1.32
148320--148358	4	9.8	4	94	0	69	28	0	20	51	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151885--151948	20	3.0	21	72	19	60	64	7	4	23	1.40
152274--152374	35	2.9	32	73	16	85	71	4	6	16	1.26
152326--152381	15	3.6	15	78	9	51	73	3	3	19	1.13
152437--152494	19	2.9	19	71	5	53	68	6	3	20	1.27
152436--152477	15	2.8	15	82	10	50	73	7	2	16	1.15
152534--152945	49	8.4	49	72	9	250	21	22	15	41	1.90
152539--152945	98	4.2	99	77	7	418	21	22	15	41	1.90
152539--152945	196	2.1	196	84	2	523	21	22	15	41	1.90
152584--152945	49	7.4	48	75	5	285	21	22	15	40	1.91
153988--154015	3	9.3	3	100	0	56	0	32	0	67	0.91
158849--159371	264	2.0	264	88	1	771	31	21	15	32	1.94
159087--160082	334	3.0	333	90	1	1543	32	18	17	32	1.94

Tables:   1

The End!