Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013829.1 Kokia drynarioides strain JFW-HI SEQ_128857, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5217
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.31

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:1067 original size:10 final size:9

Alignment explanation


    Indices: 1039--1066  Score: 56
    Period size: 9  Copynumber: 3.1  Consensus size: 9

       1029 CACAATCATG

                     
       1039 TGTTTTTTT
          1 TGTTTTTTT

                     
       1048 TGTTTTTTT
          1 TGTTTTTTT

                     
       1057 TGTTTTTTT
          1 TGTTTTTTT

             
       1066 T
          1 T

       1067 TTAAAAAGTA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   19  1.00

ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89


Consensus pattern (9 bp):   
TGTTTTTTT

Found at i:4781 original size:18 final size:18

Alignment explanation


    Indices: 4696--4789  Score: 109
    Period size: 18  Copynumber: 5.2  Consensus size: 18

       4686 CAGGTTCTGC

                    *  *     *
       4696 TCCAAGTTAACGTTGTGA
          1 TCCAAGTTCACATTGTGT

            *             *    
       4714 ACCAAGCTT-ACATCGTGT
          1 TCCAAG-TTCACATTGTGT

                         *    
       4732 TCCAAGTTCACATCGTGT
          1 TCCAAGTTCACATTGTGT

                              
       4750 TCCAAGTTCACATTGTGT
          1 TCCAAGTTCACATTGTGT

                           *  
       4768 TCCAAGTTCACATTGGGT
          1 TCCAAGTTCACATTGTGT

                
       4786 TCCA
          1 TCCA

       4790 TGTCCACGTA


Statistics
Matches: 67,  Mismatches: 7, Indels: 4
        0.86            0.09        0.05

Matches are distributed among these distances:
  17    2  0.03
  18   63  0.94
  19    2  0.03

ACGTcount: A:0.24, C:0.24, G:0.18, T:0.33


Consensus pattern (18 bp):   
TCCAAGTTCACATTGTGT
Done.