Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013832.1 Kokia drynarioides strain JFW-HI SEQ_128860, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7641
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:3471 original size:26 final size:26

Alignment explanation


    Indices: 3442--3508  Score: 134
    Period size: 26  Copynumber: 2.6  Consensus size: 26

       3432 GCTTCTGACA

                                      
       3442 AGGAGCATTCCTAAATGCGACGTAAG
          1 AGGAGCATTCCTAAATGCGACGTAAG

                                      
       3468 AGGAGCATTCCTAAATGCGACGTAAG
          1 AGGAGCATTCCTAAATGCGACGTAAG

                           
       3494 AGGAGCATTCCTAAA
          1 AGGAGCATTCCTAAA

       3509 GTGCAATGAC


Statistics
Matches: 41,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   41  1.00

ACGTcount: A:0.36, C:0.19, G:0.25, T:0.19


Consensus pattern (26 bp):   
AGGAGCATTCCTAAATGCGACGTAAG

Found at i:5300 original size:19 final size:19

Alignment explanation


    Indices: 5276--5320  Score: 90
    Period size: 19  Copynumber: 2.4  Consensus size: 19

       5266 GTGATTACTA

                               
       5276 CAACAGCTCAGCTAGAATC
          1 CAACAGCTCAGCTAGAATC

                               
       5295 CAACAGCTCAGCTAGAATC
          1 CAACAGCTCAGCTAGAATC

                   
       5314 CAACAGC
          1 CAACAGC

       5321 CTTGGGGAAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   26  1.00

ACGTcount: A:0.38, C:0.33, G:0.16, T:0.13


Consensus pattern (19 bp):   
CAACAGCTCAGCTAGAATC
Done.