Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013834.1 Kokia drynarioides strain JFW-HI SEQ_128862, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21450
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:125 original size:62 final size:62
Alignment explanation
Indices: 1--172 Score: 245
Period size: 62 Copynumber: 2.8 Consensus size: 62
* * *
1 TCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAAATAAGTTTTTGACAAGCTCGGAAGT
1 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAATAAGTTTTTGACAAGCTCAGAAGT
* * * *
64 TCGTCCAAGAACTAAGAGAGAAGCAATACTCACGTAAATAAGTTTTTGACAAGTTCAGAAGT
1 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGCTCAGAAGT
* * *
126 TCGTCCAAGATCCAAGAGAGAACCAATTCTCACGTAGATAAGTTTTT
1 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
173 AATTGAGCGA
Statistics
Matches: 97, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
62 67 0.69
63 30 0.31
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.25
Consensus pattern (62 bp):
TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGCTCAGAAGT
Found at i:410 original size:62 final size:62
Alignment explanation
Indices: 341--509 Score: 241
Period size: 62 Copynumber: 2.7 Consensus size: 62
331 GGTTCGGATG
341 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTCG-AAA
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAG-TTCGTAAA
* * * * * * * *
403 TTTGTCCAAGAACCGAGAGAGAAACAGTTTTCACGTAAATATGTTTTTGATAAGTTCGTTAG
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGTAAA
*
465 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
510 ATTAATTAAC
Statistics
Matches: 92, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
61 4 0.04
62 88 0.96
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.28
Consensus pattern (62 bp):
TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGTAAA
Found at i:657 original size:340 final size:340
Alignment explanation
Indices: 1--1411 Score: 1714
Period size: 340 Copynumber: 4.1 Consensus size: 340
* * * *
1 TCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAAATAAGTTTTTGACAAGCTCGGAAGTTC
1 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAATAAGTTTTTGACAAGCTCAGAAATTC
* *
66 GTCCAAGAACTAAGAGAGAAGCAATACTCACGTAAATAAGTTTTTGACAAGTTCAGAAGTTCGTC
65 GTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTTGACAAGTTCAGAAGTTCGTC
* * * *
131 CAAGATCCAAGAGAGAACCAATTCTCACGTAGATAAGTTTTTAATTGAGCGACCAAAACTTGTTT
130 CAAGAACCAAGAGAGAACCAATTCTCACGTAGATAAGTTATTAATTCAACGACCAAAACTTGTTT
* **
196 ACAAAAGGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTA
195 ACAAAATGACAAACTATTTAGACCAAATGGTGCGATTTCCCGAGCATGGAATGTTCAAAAAA-TA
261 -CTCAAAGGAATGAATCCTCCTGAATACTTTCAGGAATCGAAGTTATAAAAGAAATCGTAAAAGT
259 GCTCAAAGGAATGAATCCTCCTGAATACTTTCAGGAATCGAAGTTATAAAAGAAATCGTAAAAGT
*
325 TTGA-AAGGTTCGGATGT
324 TTGACAA-GTTCAGATGT
* *
342 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTC-GAAATTT
1 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAG-CTCAGAAATTC
* * ** * * *
406 GTCCAAGAACCGAGAGAGAAACAGTTTTCACGTAAATATGTTTTTGATAAGTTC-GTTAGTTCGT
65 GTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTTGACAAGTTCAG-AAGTTCGT
* *
470 CCAAGAACCAAGAGAGAAACAATTCTCACGTA-ACTAAGTTATTAATT-AACAGTCCAAAACTTG
129 CCAAGAACCAAGAGAGAACCAATTCTCACGTAGA-TAAGTTATTAATTCAAC-GACCAAAACTTG
* * * ** * * * *
533 CTTACAAAATGACAAACTATTTTGACCACATGGTTTGATTTCTCTAGCGTGGAATGTTCGAAAAA
192 TTTACAAAATGACAAACTATTTAGACCAAATGGTGCGATTTCCCGAGCATGGAATGTTCAAAAAA
* * * * *
598 TAGCTCGAAGGAATGGATCGTCATGAATACCTTCAGGAATCGAAGTTATAAAAGAAATCGTAAAA
257 TAGCTCAAAGGAATGAATCCTCCTGAATACTTTCAGGAATCGAAGTTATAAAAGAAATCGTAAAA
*
663 TGTTTGACAAGTTCACATGT
322 -GTTTGACAAGTTCAGATGT
* * * **
683 TCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAAATAACTTTTTGACAAGCTCAGAGGTTC
1 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAATAAGTTTTTGACAAGCTCAGAAATTC
* *
748 GTCCAAGAACTAAGAGA-AAAGCAATACTCACGTAAATAAGTTTTTAACAAGTTCAGAAGTTCGT
65 GTCCAAGAACCAAGAGAGAAA-CAATACTCACGTAAATAAGTTTTTGACAAGTTCAGAAGTTCGT
* * *
812 CCAAGATCCAAGAGAGAACCAATTCTCACGTAGATAAGTTTTTAATTCAGCGACCAAAACTTGTT
129 CCAAGAACCAAGAGAGAACCAATTCTCACGTAGATAAGTTATTAATTCAACGACCAAAACTTGTT
* *
877 TACAAAA-GTACAAACTATTTAGACCAAATTGTGCAATTTCCCGAGCATGGAATGTTCAAAAAAT
194 TACAAAATG-ACAAACTATTTAGACCAAATGGTGCGATTTCCCGAGCATGGAATGTTCAAAAAAT
* * * *
941 TGCTCAAAGGAATGGATCCTCCTAAATACTTTCAGGAATCGACGTTATAAAAGAAATCGTAAAAG
258 AGCTCAAAGGAATGAATCCTCCTGAATACTTTCAGGAATCGAAGTTATAAAAGAAATCGTAAAAG
*
1006 TTTGA-AAGGTCCAGATGT
323 TTTGACAA-GTTCAGATGT
* * * * ** *
1024 TCTTCCAAGAACCAAGAGAGAAACAATTCCCACGTAAATAAGTTTTCGACAAGTTTGGAATTTCG
1 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGCTCAGAAATTCG
* * * * *
1089 TCCAAGAACCAATAGAGAAACAATTCTCACGTAATTAAGTTTTTGATAAGTTCAGAAGTTCATCC
66 TCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTTGACAAGTTCAGAAGTTCGTCC
* * * *
1154 AAGAACCAGGAGAGAATCAATTCTCACGTA-ACTGAGTTATTAATT-AACAGTCCAAAACTTGTT
131 AAGAACCAAGAGAGAACCAATTCTCACGTAGA-TAAGTTATTAATTCAAC-GACCAAAACTTGTT
* * * * * *** *
1217 TACAAAATGACAAACTATTTTGACCAGATGGTGTGATTTCTCGATCATGGAAATGTTTGGAAATT
194 TACAAAATGACAAACTATTTAGACCAAATGGTGCGATTTCCCGAGCATGG-AATGTTCAAAAAAT
* * * * * * * * * *
1282 TGCTCAAAGGAATCAATCGTCTTGAATACTTTAAGGAACCTAAGTGT-TAAAAGAACTCATGAAA
258 AGCTCAAAGGAATGAATCCTCCTGAATACTTTCAGGAATCGAAGT-TATAAAAGAAATCGTAAAA
*
1346 GTTTGACAAGTTC-GAAAGT
322 GTTTGACAAGTTCAG-ATGT
* * *
1365 TCGTCCAAGATCCGAGAGAGAAATAATTCTCACGTAAATAAGTTTTT
1 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1412 AATTCAAACA
Statistics
Matches: 912, Mismatches: 135, Indels: 46
0.83 0.12 0.04
Matches are distributed among these distances:
339 9 0.01
340 411 0.45
341 250 0.27
342 238 0.26
343 4 0.00
ACGTcount: A:0.38, C:0.17, G:0.18, T:0.27
Consensus pattern (340 bp):
TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGCTCAGAAATTCG
TCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTTGACAAGTTCAGAAGTTCGTCC
AAGAACCAAGAGAGAACCAATTCTCACGTAGATAAGTTATTAATTCAACGACCAAAACTTGTTTA
CAAAATGACAAACTATTTAGACCAAATGGTGCGATTTCCCGAGCATGGAATGTTCAAAAAATAGC
TCAAAGGAATGAATCCTCCTGAATACTTTCAGGAATCGAAGTTATAAAAGAAATCGTAAAAGTTT
GACAAGTTCAGATGT
Found at i:804 original size:62 final size:61
Alignment explanation
Indices: 669--856 Score: 223
Period size: 62 Copynumber: 3.0 Consensus size: 61
659 AAAATGTTTG
* * * * * *
669 ACAAGTTCACATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAAATAACTTTTTG
1 ACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGA-AAACAATTCTCACGT-AAATAAGTTTTTA
* * * *
732 ACAAGCTCAGAGGTTCGTCCAAGAACTAAGAGAAAAGCAATACTCACGTAAATAAGTTTTTA
1 ACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAAAA-CAATTCTCACGTAAATAAGTTTTTA
* * *
794 ACAAGTTCAGAAGTTCGTCCAAGATCCAAGAGAGAACCAATTCTCACGTAGATAAGTTTTTA
1 ACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGA-AAACAATTCTCACGTAAATAAGTTTTTA
856 A
1 A
857 TTCAGCGACC
Statistics
Matches: 107, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
62 67 0.63
63 40 0.37
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.25
Consensus pattern (61 bp):
ACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAAAACAATTCTCACGTAAATAAGTTTTTA
Found at i:1096 original size:62 final size:62
Alignment explanation
Indices: 1017--1184 Score: 219
Period size: 62 Copynumber: 2.7 Consensus size: 62
1007 TTGAAAGGTC
* * *
1017 CAGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCCCACGTAAATAAGTTTTCGACAAGTT
1 CAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTCGACAAGTT
** * * * * * *
1079 TGGAATTTCGTCCAAGAACCAATAGAGAAACAATTCTCACGTAATTAAGTTTTTGATAAGTT
1 CAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTCGACAAGTT
* *
1141 CAGAAGTTCATCCAAGAACCAGGAGAGAATCAATTCTCACGTAA
1 CAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAA
1185 CTGAGTTATT
Statistics
Matches: 89, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
62 89 1.00
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.26
Consensus pattern (62 bp):
CAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTCGACAAGTT
Found at i:1352 original size:682 final size:682
Alignment explanation
Indices: 1--1411 Score: 2222
Period size: 682 Copynumber: 2.1 Consensus size: 682
*
1 TCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAAATAAGTTTTTGACAAGCTCGGAAGTTC
1 TCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAAATAAGTTTTTGACAAGCTCAGAAGTTC
* *
66 GTCCAAGAACTAAGAGAGAAGCAATACTCACGTAAATAAGTTTTTGACAAGTTCAGAAGTTCGTC
66 GTCCAAGAACTAAGAGAAAAGCAATACTCACGTAAATAAGTTTTTAACAAGTTCAGAAGTTCGTC
*
131 CAAGATCCAAGAGAGAACCAATTCTCACGTAGATAAGTTTTTAATTGAGCGACCAAAACTTGTTT
131 CAAGATCCAAGAGAGAACCAATTCTCACGTAGATAAGTTTTTAATTCAGCGACCAAAACTTGTTT
*
196 ACAAAAGGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTA
196 ACAAAAGGACAAACTATTTAGACCAAATTATGCAATTTCCCGAGCATGGAATGTTCAAAAAATTA
*
261 CTCAAAGGAATGAATCCTCCTGAATACTTTCAGGAATCGAAGTTATAAAAGAAATCGTAAAAGTT
261 CTCAAAGGAATGAATCCTCCTAAATACTTTCAGGAATCGAAGTTATAAAAGAAATCGTAAAAGTT
* * * *
326 TGAAAGGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGA
326 TGAAAGGTCCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCCCACGTAAATAAGTTTTCGA
* * * *
391 CAAGTTTCGAAATTTGTCCAAGAACCGAGAGAGAAACAGTTTTCACGTAAATATGTTTTTGATAA
391 CAAGTTTCGAAATTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGATAA
* *
456 GTTCGTTAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACA
456 GTTCGTAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACA
* * *
521 GTCCAAAACTTGCTTACAAAATGACAAACTATTTTGACCACATGGTTTGATTTCTCTAGCGTGGA
521 GTCCAAAACTTGCTTACAAAATGACAAACTATTTTGACCACATGGTGTGATTTCTCGAGCATGGA
* ** * *
586 ATGTTCGAAAAATAGCTCGAAGGAATGGATCGTCATGAATACCTTCAGGAATCGAAGTTATAAAA
586 ATGTTCGAAAAATAGCTCAAAGGAATCAATCGTCATGAATACCTTAAGGAACCGAAGTTATAAAA
* *
651 GAAATCGTAAAATGTTTGACAAGTTC-ACATGT
651 GAAATCATAAAATGTTTGACAAGTTCGA-AAGT
* *
683 TCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAAATAACTTTTTGACAAGCTCAGAGGTTC
1 TCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAAATAAGTTTTTGACAAGCTCAGAAGTTC
748 GTCCAAGAACTAAGAGAAAAGCAATACTCACGTAAATAAGTTTTTAACAAGTTCAGAAGTTCGTC
66 GTCCAAGAACTAAGAGAAAAGCAATACTCACGTAAATAAGTTTTTAACAAGTTCAGAAGTTCGTC
813 CAAGATCCAAGAGAGAACCAATTCTCACGTAGATAAGTTTTTAATTCAGCGACCAAAACTTGTTT
131 CAAGATCCAAGAGAGAACCAATTCTCACGTAGATAAGTTTTTAATTCAGCGACCAAAACTTGTTT
* * *
878 ACAAAAGTACAAACTATTTAGACCAAATTGTGCAATTTCCCGAGCATGGAATGTTCAAAAAATTG
196 ACAAAAGGACAAACTATTTAGACCAAATTATGCAATTTCCCGAGCATGGAATGTTCAAAAAATTA
* *
943 CTCAAAGGAATGGATCCTCCTAAATACTTTCAGGAATCGACGTTATAAAAGAAATCGTAAAAGTT
261 CTCAAAGGAATGAATCCTCCTAAATACTTTCAGGAATCGAAGTTATAAAAGAAATCGTAAAAGTT
*
1008 TGAAAGGTCCAGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCCCACGTAAATAAGTTTTCGA
326 TGAAAGGTCCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCCCACGTAAATAAGTTTTCGA
* * *
1073 CAAGTTT-GGAATTTCGTCCAAGAACCAATAGAGAAACAATTCTCACGTAATTAAGTTTTTGATA
391 CAAGTTTCGAAATTT-GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGATA
* * *
1137 AGTTCAG-AAGTTCATCCAAGAACCAGGAGAGAATCAATTCTCACGTAACTGAGTTATTAATTAA
455 AGTTC-GTAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
* * *
1201 CAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAGATGGTGTGATTTCTCGATCATG
519 CAGTCCAAAACTTGCTTACAAAATGACAAACTATTTTGACCACATGGTGTGATTTCTCGAGCATG
* * * * * * *
1266 GAAATGTTTGGAAATTTGCTCAAAGGAATCAATCGTCTTGAATACTTTAAGGAACCTAAGTGT-T
584 G-AATGTTCGAAAAATAGCTCAAAGGAATCAATCGTCATGAATACCTTAAGGAACCGAAGT-TAT
* *
1330 AAAAGAACTCATGAAA-GTTTGACAAGTTCGAAAGT
647 AAAAGAAATCATAAAATGTTTGACAAGTTCGAAAGT
* * * * *
1365 TCGTCCAAGATCCGAGAGAGAAATAATTCTCACGT-AAATAAGTTTTT
1 TCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAAATAAGTTTTT
1412 AATTCAAACA
Statistics
Matches: 666, Mismatches: 58, Indels: 11
0.91 0.08 0.01
Matches are distributed among these distances:
681 17 0.03
682 585 0.88
683 63 0.09
684 1 0.00
ACGTcount: A:0.38, C:0.17, G:0.18, T:0.27
Consensus pattern (682 bp):
TCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAAATAAGTTTTTGACAAGCTCAGAAGTTC
GTCCAAGAACTAAGAGAAAAGCAATACTCACGTAAATAAGTTTTTAACAAGTTCAGAAGTTCGTC
CAAGATCCAAGAGAGAACCAATTCTCACGTAGATAAGTTTTTAATTCAGCGACCAAAACTTGTTT
ACAAAAGGACAAACTATTTAGACCAAATTATGCAATTTCCCGAGCATGGAATGTTCAAAAAATTA
CTCAAAGGAATGAATCCTCCTAAATACTTTCAGGAATCGAAGTTATAAAAGAAATCGTAAAAGTT
TGAAAGGTCCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCCCACGTAAATAAGTTTTCGA
CAAGTTTCGAAATTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGATAA
GTTCGTAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACA
GTCCAAAACTTGCTTACAAAATGACAAACTATTTTGACCACATGGTGTGATTTCTCGAGCATGGA
ATGTTCGAAAAATAGCTCAAAGGAATCAATCGTCATGAATACCTTAAGGAACCGAAGTTATAAAA
GAAATCATAAAATGTTTGACAAGTTCGAAAGT
Found at i:1993 original size:217 final size:216
Alignment explanation
Indices: 1130--3818 Score: 1455
Period size: 217 Copynumber: 12.3 Consensus size: 216
1120 TAATTAAGTT
* * * * * * *
1130 TTTGATAAGTTCAGAAGTTCATCCAAGAACCAGGAGAGAATCAATTCTCACGTAACTGAGTTATT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * * * *
1195 AATT-AACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAGATGGTGTGATTTCTC
66 AATTCAA-AGACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCC
* * * * ** *
1259 GATCATGGAAATGTTTGGAAATTTGCTCAAAGGAATCAATCGTCTTGAATACTTTAAGGAACCTA
130 GAGCATGG-AATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGA
* *
1324 AGTGT-TAAAAGAACTCATGAAAG
194 AGT-TATAAAAGAACTCGTAAAAG
* * *
1347 TTTGACAAGTTC-GAAAGTTCGTCCAAGATCCGAGAGAGAAATAATTCTCACGTAAATAAGTTTT
1 TTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * * * *
1411 TAATTCAAACACCAAAACTTGTTTACAAACTGACAAACTATTTAGACAAAATTATGTGATTT-CT
65 TAATTCAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCC
* * * *
1475 GAGCATGGAATGTTCGAAAAAATGCTAGAAAGGAATAGATCGTCTTGAATACTTTCAGGAACCGA
130 GAGCATGGAATGTTCGAAAAATTGCT-CAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGA
* * *
1540 AGTTATAAAAGAAATCGCAAAAT
194 AGTTATAAAAGAACTCGTAAAAG
* * * * * * * * *
1563 TTTAACAAGTTCGGATGTTTGTCCAAGAGCCAAGTGAGAAATAATTATTACGTAAATAAGTTTTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* *** * ** * * **
1628 AATTCAAAAACCAAAACATGTTTTTGAAAGGACAAAC-ATTTTAGACCCTACGATGCTATTTTAC
66 AATTCAAAGACCAAAACATGTTTACAAAATGACAAACTA-TTTAGACCAAATGATGCGATTTCCC
* * **
1692 GAGCAT-GAATGTTCGAAAAATT-CTCGAAGGAATGGACCGTCTTGAATA-TTGTAAGGTGCCGA
130 GAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTT-TAAGGAACCGA
*
1754 AGTTATAAAAGATCTCGTAAAAG
194 AGTTATAAAAGAACTCGTAAAAG
* * * * *
1777 TTTGAGAAGTTCAGACGTTCATCCAGGAACCAAGAGAAAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * *
1842 AATTGAAAGACCAAATCCTGTTTCCAAAATGACAAACTATTCAGACCAAATGATGCGATTTCCCG
66 AATTCAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCG
* ** * * *
1907 AGCATGGAAATCTTATAAAAATTGCCCAAAGGAATGGATCGCCTTGAATACTTTAAGGAATCGAA
131 AGCATGG-AATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
* *
1972 GTTATAAAACAACTTGTAAAAG
195 GTTATAAAAGAACTCGTAAAAG
* * * * * * *
1994 TTT-AAAATGTTC-GAAAGTTCGTCTAAGAACAAAAAGAGAAGCAGTTCTCACATAAATAAGTTT
1 TTTGACAA-GTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * *
2057 TTAATTCAAAGACCAAAATAT-TTTTCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCT
64 TTAATTCAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
* * * * ** * * *
2121 CGAGTAAGGAATGTTCGAAAAATAGCTCGAAGGAATTCATCGTCATGAATACCTTCAGGAACCGA
129 CGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGA
2186 AGTTATAAAAGAAAC-CGTAAAATG
194 AGTTATAAAAG-AACTCGTAAAA-G
* * * *
2210 TTTGACAAGTTCACATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAAATAAGTTTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAATAAGTTTT
* ** * * * * * *
2275 TGA--C-AAG-CTC-GGA-A-GTTCATCCAAGAACTAAGAGAGAAGCAATACT-CACGTAAAT-A
65 TAATTCAAAGAC-CAAAACATGTT--TACAA-AA-T--GACA-AA-CTAT-TTAGAC-CAAATGA
* ** ** * ** *** **
2331 AG-TTTTTGACAAGTTCA--GAA-GTTCGTCCAAA-T-C-CAAGAGAGAACCAATTC-TCACGTA
119 TGCGATTTCCCGAG--CATGGAATGTTCG-AAAAATTGCTCAA-AG-GAATGGA-TCGTCTTG-A
* * * *
2388 GATAAGTTTTTAATTCAGCG-ACCAAAACTTGTT-TACAA-AAGT--TCAAACTA-
177 -AT-A--CTTT-A---AG-GAACC-GAA---GTTATAAAAGAACTCGT-AAA--AG
* ** * * * *** ** * *
2438 TTTAGACCAAATTGTGCCATTTC--CCGAGCATGGAATGTTCA-AAA-AATTGCTCAAAG-GAAT
1 TTT-GA-CAAGTTCAG-AAGTTCGTCCAAG-AACCAA-G-AGAGAAACAATT-CTC-ACGTAAAT
* * ** * * * * * * ** ***
2498 -GGATCCT-CTT-GAATACTTTCAAGAATCGAAG-TTATAAAA-GA-AATCGTA-AAAGTTTGAA
58 AAGTTTTTAATTCAAAGAC---CAA-AA-C-ATGTTTACAAAATGACAAAC-TATTTAG-ACCAA
* * ** *** *** ** *
2556 A-GGTTCGGATGTTCGTCTAAG-AACCAA-GAGAGAAACAATT-CTCACGTAAATAAGTTTTCGA
115 ATGATGC-GAT-TTC--CCGAGCATGGAATGTTCGAAA-AATTGCTCA---AAGGAA----TGGA
* ** * * *
2617 -CAAGT-TTGGAATTTCGTCCAA-GAACC-AAG--AGAGAAACAATTCTCACGCAATTAAG
168 TC--GTCTT-GAA-TAC-TTTAAGGAACCGAAGTTATA-AAAGAA--CT--CGTAA--AAG
* * * * * *
2672 TTTTTGATAAGTTC-GAAAGTTTGTCCAAGAAACAAGAGAGAATCAATTCTCACGTAACTGAGTT
1 --TTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * * * * *
2736 ATTAATT-AACAGTCCAAAACTTGTTTAGAAAATGACAAACTATTTTGCCCAGATGGTGTGATTT
63 TTTAATTCAA-AGACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * * * *
2800 CTCGATCATGGAAATGTTTGGAAATTTGCTCAAAGGAATCGATCGTCTTGAATACTTTAAGGAAC
127 CCCGAGCATGG-AATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
* * *
2865 CTAAG-TATTAAAAGAACTCGTGAATG
191 CGAAGTTA-TAAAAGAACTCGTAAAAG
* * * *
2891 TTTGATAAGTT-TGAAAGTTCGTCCAAGAACCGAGAGAGAAATAATTCTCACGTAAATAAGTTTT
1 TTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * * * *
2955 TAATTCAAACACCAAAACTTGTTTAGAAACTGACAAACTATTTAGACAAAATTATGTGATTTCCC
65 TAATTCAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCC
* * * * *
3020 GAGCATGGAATGTTCGAAAAATTGCTAGAAAGGAATAGATCATCTTGAATACTTTCAGGAACCAA
130 GAGCATGGAATGTTCGAAAAATTGCT-CAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGA
* *
3085 AGTTATAAAAGAAATCGCAAAAG
194 AGTTATAAAAGAACTCGTAAAAG
* * * * * *
3108 TTTGACAAGTTCAGATGTTCATCCAAGAGCCAAGTGAGAAACAATTCTTACATAAATAAGTTTTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * ** * * **
3173 AATTCAAAAACCAAAACATGTTTACGAAAGGACAAACTGTTTAGACCCTACGATGCAATTTTACG
66 AATTCAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCG
* * * **
3238 AGCAT-GAAGTTTTCGAAAAATT-CTCGAAGGAATGGACCGTCTTGAATA-TTGTAAGGTGCCGA
131 AGCATGGAA-TGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTT-TAAGGAACCGA
3300 AGTTATAAAAGAACTCGTAAAAG
194 AGTTATAAAAGAACTCGTAAAAG
* * * *
3323 TTGGAAAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAACTTTTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * * * * *
3388 AATTAAAAGAACAAATCCTGTTTACAAAATGAC--ATTATTCAGACCAAATGATGTGATTTCTCG
66 AATTCAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCG
* * * * *
3451 AGCATGGAAATCTTCGAAAAACTGCCCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAA
131 AGCATGG-AATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
*
3516 GTTATAAAACAACTCGTAAAAG
195 GTTATAAAAGAACTCGTAAAAG
* * * * * * *
3538 TTT-AAAATGTTCGGAAGCTCATCTAAGAACAAAGAGAGAAACAGTTCTCACGTAAATAAGTTTT
1 TTTGACAA-GTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * *
3602 TAATTCAAAGACCAAAATAT-TTTTCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC
65 TAATTCAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCC
* * * ** * * * * *
3666 TAGCAAGGAATGTTCGGAAAATAACTCGAAGGAATGGATCGTCATGAATACCTTCAGGAATCGAA
130 GAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
*
3731 GTTATAAAAGAAATCGTAAAAAG
195 GTTATAAAAGAACTCGT-AAAAG
* *
3754 TTTGACAAGTTTAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
3819 GACAAGTTNG
Statistics
Matches: 1866, Mismatches: 449, Indels: 315
0.71 0.17 0.12
Matches are distributed among these distances:
212 3 0.00
213 29 0.02
214 190 0.10
215 398 0.21
216 392 0.21
217 527 0.28
218 25 0.01
219 19 0.01
220 9 0.00
221 10 0.01
222 3 0.00
223 11 0.01
224 8 0.00
225 12 0.01
226 3 0.00
227 9 0.00
228 17 0.01
229 16 0.01
230 30 0.02
231 35 0.02
232 33 0.02
233 33 0.02
234 16 0.01
235 15 0.01
236 10 0.01
237 3 0.00
238 3 0.00
239 5 0.00
240 2 0.00
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (216 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTCAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCG
AGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
TTATAAAAGAACTCGTAAAAG
Found at i:2094 original size:430 final size:432
Alignment explanation
Indices: 1205--2275 Score: 1106
Period size: 430 Copynumber: 2.5 Consensus size: 432
1195 AATTAACAGT
* * * * * * * * *
1205 CCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAGATGGTGTGATTTCTCGA-TCATGGAA
1 CCAAAACATGTTTTCAAAAGGACAAACTATTTAGACCAAACGATGCGATTTCTCGAGT-AAGG-A
* * * * * * *
1269 ATGTTTGGAAATTTGCTCAAAGGAAT-CAATCGTCTTGAATACTTTAAGGAACCTAAGTGT-TAA
64 ATGTTCGAAAAATAGCTCGAAGGAATGC-ACCGTCTTGAATACTTTAAGGAACCGAAGT-TATAA
* * * * *
1332 AAGAACTCATGAAAGTTTGACAAGTTC-GAAAGTTCGTCCAAGATCCGAGAGAGAAATAATTCTC
127 AAGAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * *
1396 ACGTAAATAAGTTTTTAATTCAAACACCAAAACTTGTTTACAAACTGACAAACTATTTAGACAAA
191 ACGTAAATAAGTTTTTAATTCAAACACCAAAACCTGTTTACAAAATGACAAACTATTCAGACAAA
* * * * * * *
1461 ATTATGTGATTTCTGAGCATGGAATGTTCGAAAAAATGCTAGAAAGGAATAGATCGTCTTGAATA
256 ATGATGCGATTTCCGAGCATGGAATCTTAGAAAAAATGCTACAAAGGAATAGATCGCCTTGAATA
* * * * * *
1526 CTTTCAGGAACCGAAGTTATAAAAGAAATCGCAAAATTTTAACAAGTTCGGATGTTTGTCCAAGA
321 CTTTAAGGAACCGAAGTTATAAAACAAATCGCAAAAGTTTAACAAGTTCGAAAGTTCGTCCAAGA
* * ** * * *
1591 GCCAAGTGAGAAATAATTATTACGTAAATAAGTTTTTAATTCAAAAA
386 ACAAAAAGAGAAACAATTATCACATAAATAAGTTTTTAATTCAAAAA
** ** * * *
1638 CCAAAACATGTTTTTGAAAGGACAAAC-ATTTTAGACCCTACGATGCTATTT-TACGAG-CATGA
1 CCAAAACATGTTTTCAAAAGGACAAACTA-TTTAGACCAAACGATGCGATTTCT-CGAGTAAGGA
* * **
1700 ATGTTCGAAAAAT-TCTCGAAGGAATGGACCGTCTTGAATA-TTGTAAGGTGCCGAAGTTATAAA
64 ATGTTCGAAAAATAGCTCGAAGGAATGCACCGTCTTGAATACTT-TAAGGAACCGAAGTTATAAA
* * * * * *
1763 AGATCTCGTAAAAGTTTGAGAAGTTCAGACGTTCATCCAGGAACCAAGAGAAAAACAATTCTCAC
128 AGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
* * * * *
1828 GTAAATAAGTTTTTAATTGAAAGACCAAATCCTGTTTCCAAAATGACAAACTATTCAGACCAAAT
193 GTAAATAAGTTTTTAATTCAAACACCAAAACCTGTTTACAAAATGACAAACTATTCAGACAAAAT
* * * *
1893 GATGCGATTTCCCGAGCATGGAAATCTTATAAAAATTGC-CCAAAGGAATGGATCGCCTTGAATA
258 GATGCGATTT-CCGAGCATGG-AATCTTAGAAAAAATGCTACAAAGGAATAGATCGCCTTGAATA
* * * * *
1957 CTTTAAGGAATCGAAGTTATAAAACAACTTGTAAAAGTTTAA-AATGTTCGAAAGTTCGTCTAAG
321 CTTTAAGGAACCGAAGTTATAAAACAAATCGCAAAAGTTTAACAA-GTTCGAAAGTTCGTCCAAG
* * * *
2021 AACAAAAAGAGAAGCAGTTCTCACATAAATAAGTTTTTAATTCAAAGA
385 AACAAAAAGAGAAACAATTATCACATAAATAAGTTTTTAATTCAAAAA
* * *
2069 CCAAAATAT-TTTTCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGTAAGGAAT
1 CCAAAACATGTTTTCAAAAGGACAAACTATTTAGACCAAACGATGCGATTTCTCGAGTAAGGAAT
* * * * *
2133 GTTCGAAAAATAGCTCGAAGGAATTCATCGTCATGAATACCTTCAGGAACCGAAGTTATAAAAGA
66 GTTCGAAAAATAGCTCGAAGGAATGCACCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAG-
* * * *
2198 AAC-CGTAAAATGTTTGACAAGTTCACATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACA
130 AACTCGTAAAA-GTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
2262 TAAAATAAGTTTTT
194 T-AAATAAGTTTTT
2276 GACAAGCTCG
Statistics
Matches: 515, Mismatches: 105, Indels: 35
0.79 0.16 0.05
Matches are distributed among these distances:
429 3 0.01
430 192 0.37
431 155 0.30
432 64 0.12
433 89 0.17
434 12 0.02
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (432 bp):
CCAAAACATGTTTTCAAAAGGACAAACTATTTAGACCAAACGATGCGATTTCTCGAGTAAGGAAT
GTTCGAAAAATAGCTCGAAGGAATGCACCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGA
ACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
AATAAGTTTTTAATTCAAACACCAAAACCTGTTTACAAAATGACAAACTATTCAGACAAAATGAT
GCGATTTCCGAGCATGGAATCTTAGAAAAAATGCTACAAAGGAATAGATCGCCTTGAATACTTTA
AGGAACCGAAGTTATAAAACAAATCGCAAAAGTTTAACAAGTTCGAAAGTTCGTCCAAGAACAAA
AAGAGAAACAATTATCACATAAATAAGTTTTTAATTCAAAAA
Found at i:2352 original size:62 final size:62
Alignment explanation
Indices: 2210--2398 Score: 245
Period size: 63 Copynumber: 3.0 Consensus size: 62
2200 CCGTAAAATG
* * * *
2210 TTTGACAAGTTCACATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAATAAGTT
* * * * * *
2273 TTTGACAAGCTCGGAAGTTCATCCAAGAACTAAGAGAGAAGCAATACTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
2335 TTTGACAAGTTCAGAAGTTCGTCCAA-ATCCAAGAGAGAACCAATTCTCACGTAGATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
2396 TTT
1 TTT
2399 AATTCAGCGA
Statistics
Matches: 108, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
61 33 0.31
62 32 0.30
63 43 0.40
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.26
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:2634 original size:62 final size:63
Alignment explanation
Indices: 2567--2728 Score: 229
Period size: 62 Copynumber: 2.6 Consensus size: 63
2557 GGTTCGGATG
* * *
2567 TTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTCGACAAGTTTGGAA-T
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTCGACAAGTTCGAAAGT
* * * *
2629 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGCAATTAAGTTTTTGATAAGTTCGAAAGT
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTCGACAAGTTCGAAAGT
* *
2692 TT-GTCCAAGAAACAAGAGAGAATCAATTCTCACGTAA
1 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA
2729 CTGAGTTATT
Statistics
Matches: 89, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
62 86 0.97
63 3 0.03
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (63 bp):
TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTCGACAAGTTCGAAAGT
Found at i:2710 original size:340 final size:339
Alignment explanation
Indices: 2002--2954 Score: 1086
Period size: 341 Copynumber: 2.8 Consensus size: 339
1992 AGTTTAAAAT
* * * * *
2002 GTTCGAAAGTTCGTCTAAG-AACAAAAAGAGAAGCAGTTCTCACATAAATAAGTTTTTAATTCAA
1 GTTCGAAAGTTCGTCCAAGAAAC-AAGAGAGAACCAATTCTCACGT-AATAAGTTTTTAATTCAA
* * * *
2066 AGACCAAAA-TAT-TTTTCAAAATGACAAACTATTTAGACCAAA-TGATGCGATTTCTCGAGTAA
64 CGACCAAAACT-TGTTTACAAAATGACAAACTATTTAGACCAAATTG-TGCGATTTCTCGAGCAT
* * * * *
2128 GGAATGTTCGAAAAATAGCTCGAAGGAATTC-ATCGTCATGAATACCTTCAGGAACCGAAGTTAT
127 GGAATGTTCGAAAAATTGCTCAAAGGAA-TCGATCGTCTTGAATACTTTCAAGAACCGAAGTTAT
*
2192 AAAAGAAACCGTAAAATGTTTGACAAGTTC-ACATGTTCGTCCAAGAACCAAGAGAGAAACAATT
191 AAAAGAAATCGTAAAA-GTTTGACAAGTTCGA-ATGTTCGTCCAAGAACCAAGAGAGAAACAATT
* * * * *
2256 CTTACATAAAATAAGTTTTTGACAAGCTCGGAAGTTCATCCAAGAACTAAGAGAGAAGCAATACT
254 CTCACGT-AAATAAGTTTTCGACAAGCTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATACT
*
2321 CACGTAAATAAGTTTTTGACAA
318 CACGCAAATAAGTTTTTGACAA
** *
2343 GTTC-AGAAGTTCGTCCAA-ATCCAAGAGAGAACCAATTCTCACGTAGATAAGTTTTTAATTCAG
1 GTTCGA-AAGTTCGTCCAAGAAACAAGAGAGAACCAATTCTCACGTA-ATAAGTTTTTAATTCAA
* * *
2406 CGACCAAAACTTGTTTACAAAA-GTTCAAACTATTTAGACCAAATTGTGCCATTTCCCGAGCATG
64 CGACCAAAACTTGTTTACAAAATG-ACAAACTATTTAGACCAAATTGTGCGATTTCTCGAGCATG
* * * *
2470 GAATGTTCAAAAAATTGCTCAAAGGAATGGATCCTCTTGAATACTTTCAAGAATCGAAGTTATAA
128 GAATGTTCGAAAAATTGCTCAAAGGAATCGATCGTCTTGAATACTTTCAAGAACCGAAGTTATAA
* *
2535 AAGAAATCGTAAAAGTTTGA-AAGGTTCGGATGTTCGTCTAAGAACCAAGAGAGAAACAATTCTC
193 AAGAAATCGTAAAAGTTTGACAA-GTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * * * *
2599 ACGTAAATAAGTTTTCGACAAGTTTGGAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
257 ACGTAAATAAGTTTTCGACAAGCTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATACTCACG
* *
2664 CAATTAAGTTTTTGATAA
322 CAAATAAGTTTTTGACAA
* * * *
2682 GTTCGAAAGTTTGTCCAAGAAACAAGAGAGAATCAATTCTCACGTAACTGAGTTATTAATT-AAC
1 GTTCGAAAGTTCGTCCAAGAAACAAGAGAGAACCAATTCTCACGTAA-TAAGTTTTTAATTCAAC
* * * * * * * *
2746 AGTCCAAAACTTGTTTAGAAAATGACAAACTATTTTGCCCAGATGGTGTGATTTCTCGATCATGG
65 -GACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATTGTGCGATTTCTCGAGCATGG
* * * *
2811 AAATGTTTGGAAATTTGCTCAAAGGAATCGATCGTCTTGAATACTTT-AAGGAACCTAAG-TATT
129 -AATGTTCGAAAAATTGCTCAAAGGAATCGATCGTCTTGAATACTTTCAA-GAACCGAAGTTA-T
* * * * * * * *
2874 AAAAGAACTCGTGAATGTTTGATAAGTTTGAAAGTTCGTCCAAGAACCGAGAGAGAAATAATTCT
191 AAAAGAAATCGTAAAAGTTTGACAAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
2939 CACGTAAATAAGTTTT
256 CACGTAAATAAGTTTT
2955 TAATTCAAAC
Statistics
Matches: 518, Mismatches: 75, Indels: 38
0.82 0.12 0.06
Matches are distributed among these distances:
339 89 0.17
340 183 0.35
341 242 0.47
342 4 0.01
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (339 bp):
GTTCGAAAGTTCGTCCAAGAAACAAGAGAGAACCAATTCTCACGTAATAAGTTTTTAATTCAACG
ACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATTGTGCGATTTCTCGAGCATGGAA
TGTTCGAAAAATTGCTCAAAGGAATCGATCGTCTTGAATACTTTCAAGAACCGAAGTTATAAAAG
AAATCGTAAAAGTTTGACAAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
AAATAAGTTTTCGACAAGCTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATACTCACGCAAA
TAAGTTTTTGACAA
Found at i:3483 original size:215 final size:215
Alignment explanation
Indices: 2695--3818 Score: 1172
Period size: 215 Copynumber: 5.2 Consensus size: 215
2685 CGAAAGTTTG
* * * * * * * *
2695 TCCAAGAAACAAGAGAGAATCAATTCTCACGTAACTGAGTTATTAATTAACAGTCCAAAACTTGT
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTAAAAGACCAAAACATGT
* * * * * * * *
2760 TTAGAAAATGACAAACTATTTTGCCCAGATGGTGTGATTTCTCGATCATGGAAATGTTTGGAAAT
66 TTACAAAATGAC-AACTATTTAGACCAAATGATGTGATTTCTCGAGCATGGAAATG-TTCGAAAA
* * * * *
2825 TTGCTCAAAGGAATCGATCGTCTTGAATACTTTAAGGAACCTAAG-TATTAAAAGAACTCGTGAA
129 ATGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTA-TAAAAGAACTCGTAAA
* * * *
2889 TGTTTGATAAGTT-TGAAAGTTCG
193 AGTTTGAAAAGTTCAG-AAGTTCA
* * * * *
2912 TCCAAGAACCGAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAACACCAAAACTTGT
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTAAAAGACCAAAACATGT
* * * * *
2977 TTAGAAACTGACAAACTATTTAGACAAAATTATGTGATTTCCCGAGCATGG-AATGTTCGAAAAA
66 TTACAAAATGAC-AACTATTTAGACCAAATGATGTGATTTCTCGAGCATGGAAATGTTCGAAAAA
* * * * * * *
3041 TTGCTAGAAAGGAATAGATCATCTTGAATACTTTCAGGAACCAAAGTTATAAAAGAAATCGCAAA
130 -TGCTCG-AAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAA
* *
3106 AGTTTGACAAGTTCAGATGTTCA
193 AGTTTGAAAAGTTCAGAAGTTCA
* * * *
3129 TCCAAGAGCCAAGTGAGAAACAATTCTTACATAAATAAGTTTTTAATTCAAAA-ACCAAAACATG
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT-AAAAGACCAAAACATG
* * * ** * ** * *
3193 TTTACGAAAGGACAAACTGTTTAGACCCTACGATGCAATTT-TACGAGCAT-GAAGTTTTCGAAA
65 TTTACAAAATGAC-AACTATTTAGACCAAATGATGTGATTTCT-CGAGCATGGAAATGTTCGAAA
* * **
3256 AATTCTCGAAGGAATGGACCGTCTTGAATA-TTGTAAGGTGCCGAAGTTATAAAAGAACTCGTAA
128 AATGCTCGAAGGAATGGATCGTCTTGAATACTT-TAAGGAACCGAAGTTATAAAAGAACTCGTAA
*
3320 AAGTTGGAAAAGTTCAGAAGTTCA
192 AAGTTTGAAAAGTTCAGAAGTTCA
* * * *
3344 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAACTTTTTAATTAAAAGAACAAATCCTGT
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTAAAAGACCAAAACATGT
* * *
3409 TTACAAAATGAC-ATTATTCAGACCAAATGATGTGATTTCTCGAGCATGGAAATCTTCGAAAAAC
66 TTACAAAATGACAACTATTTAGACCAAATGATGTGATTTCTCGAGCATGGAAATGTTCGAAAAA-
* * *
3473 TGCCCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAACAACTCGTAAAAG
130 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
* *
3538 TTT-AAAATGTTCGGAAGCTCA
195 TTTGAAAA-GTTCAGAAGTTCA
* * * * *
3559 TCTAAGAACAAAGAGAGAAACAGTTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAATAT-T
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTAAAAGACCAAAACATGT
* * * * *
3623 TTTCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCTAGCAAGG-AATGTTCGGAAAA
66 TTACAAAATGAC-AACTATTTAGACCAAATGATGTGATTTCTCGAGCATGGAAATGTTCGAAAAA
* * * * * *
3687 TAACTCGAAGGAATGGATCGTCATGAATACCTTCAGGAATCGAAGTTATAAAAGAAATCGTAAAA
130 T-GCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT-AAA
* * * *
3752 AGTTTGACAAGTTTAGATGTTCG
193 AGTTTGAAAAGTTCAGAAGTTCA
3775 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
3819 GACAAGTTNG
Statistics
Matches: 751, Mismatches: 137, Indels: 39
0.81 0.15 0.04
Matches are distributed among these distances:
213 25 0.03
214 37 0.05
215 318 0.42
216 104 0.14
217 261 0.35
218 6 0.01
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (215 bp):
TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTAAAAGACCAAAACATGT
TTACAAAATGACAACTATTTAGACCAAATGATGTGATTTCTCGAGCATGGAAATGTTCGAAAAAT
GCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGT
TTGAAAAGTTCAGAAGTTCA
Found at i:3839 original size:62 final size:62
Alignment explanation
Indices: 3754--3939 Score: 275
Period size: 62 Copynumber: 3.0 Consensus size: 62
3744 TCGTAAAAAG
*
3754 TTTGACAAGTTTAG-ATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAT-TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** *
3816 TTTGACAAGTTNGGAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTT
1 TTTGACAAGTTCAGAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
3878 TTCGATAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAACTAAGTT
1 TTTGACAAGTTCAGAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
3940 ATTAATTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
62 110 0.98
63 2 0.02
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.26
Consensus pattern (62 bp):
TTTGACAAGTTCAGAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:4284 original size:216 final size:215
Alignment explanation
Indices: 3884--9624 Score: 1512
Period size: 216 Copynumber: 26.1 Consensus size: 215
3874 AGTTTTCGAT
* * *
3884 AAGTTCAGAA-GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAACTAAGTTATTAATT-
1 AAGTTC-GAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * * * ** ** *
3947 ACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTGACCACATGGTTAG-TTTTCTCGAGCA
65 AAAGACCAAAACTTGTTTAC-AAATGACAAACTATTTAGACCAAATCATGCGATTTCCT-GAGCA
*** * * * *
4011 TGGAAATGTT-TGGAAATT-TGCTCAAAGGAATGGATTGTCTTGAAAACTTTAAGGAACCTAAGT
128 TGG-AATGTTCAAAAAATTAT-CT-GAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGT
*
4074 TATAAAAGAACTCGTGAAAGTTTGAC
190 TATAAAAGAACTCGTAAAAGTTTGAC
* * * *
4100 AAGTTCGAAAGTTCATCCAAGAATCGAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
1 AAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* * * *
4165 AACACCAAAAGTTGTTTACAAACTAACAAACTATTTATACCAAATCATGCGATTTCCTGAGCATG
66 AAGACCAAAACTTGTTTACAAA-TGACAAACTATTTAGACCAAATCATGCGATTTCCTGAGCATG
* * * ** * * *
4230 GTATGTTCAAAAAATTTTCTGAAGTAAAAGATCATCTTGAATACTTTCAGGAACCGAAGTTATGA
130 GAATGTTCAAAAAATTATCTGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAA
*
4295 AAGAAATCGTAAAAGTTTGAC
195 AAGAACTCGTAAAAGTTTGAC
* * * * * *
4316 GAGTTCGGATGTTCGTCCAAGAGCCAA-AGAGAAACAGTTATTACGTAAATAAGTTTTTAATTCA
1 AAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* * * *
4380 TAA-ACCAAAACATGTTTACGAAATGACAAACTTTTTAGACCATA-CGATGCGATTTTAC-GAGC
66 -AAGACCAAAACTTGTTTAC-AAATGACAAACTATTTAGACCAAATC-ATGCGA-TTTCCTGAGC
* * * * * * **
4442 ACT-GAGTGTTCGAAAAATTCTC-AAAGGAATGGATTGTCTTGAATACTGTAAGGCGCCGAAGTT
127 A-TGGAATGTTCAAAAAATTATCTGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTT
* *
4505 ATAAAAGATCTCGTAAAAGTTTGAG
191 ATAAAAGAACTCGTAAAAGTTTGAC
* * * * * *
4530 AAGTTCAGAA-GTACATCCACGAACCAAGAGAAAAACAATTCTCACGTAAATAAATTTTTAATTG
1 AAGTTC-GAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * * * * * *
4594 AAAGACCAAATCCTATATACAAATTGACAAACTATTCAGACCAAATGATGCGATTTCCCGAGCAT
65 AAAGACCAAAACTTGTTTACAAA-TGACAAACTATTTAGACCAAATCATGCGATTTCCTGAGCAT
* ** * * *
4659 GGAAATCTTCAAAAAATTGCCCGAAGGAATGGATCGCCTTGAATACTTTAAGGAATCGAAGTTAT
129 GG-AATGTTCAAAAAATTATCTGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT
* *
4724 AAAACAACTCGTAAAAGTTT-AA
193 AAAAGAACTCGTAAAAGTTTGAC
* * * * **
4746 AATGTTCGGATGTTCGTCTAAGAACAAAAAGAGAAACTGTTCTCACGTAAATAAGTTTTTAATTC
1 AA-GTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * * *
4811 AAAGACCAAAA-TAGTTTTCAAAATGACAAACTATTTAGACCAAATGATGCGATTT-CTCGAGTA
65 AAAGACCAAAACTTGTTTAC-AAATGACAAACTATTTAGACCAAATCATGCGATTTCCT-GAGCA
* * * * * * * *
4874 AGGAATGTTCAGATAA-TAGCTCGAAGGAATGGGTCGTCATGAATACCTTCAGGAACCGAAGTTA
128 TGGAATGTTCAAAAAATTATCT-GAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTA
*
4938 TAAAAGAAATCGTAAAATGTTTGAC
192 TAAAAGAACTCGTAAAA-GTTTGAC
* *
4963 AAGTTC-AGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAAATAAGTTTTTGACA
1 AAGTTCGA-ATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAATAAGTTTTT---A
* * * * *** * *
5027 AGCTCGATAGTTCGTCCAAGAACTAAGAGAGAAGCAACACTCACGTAAA-TAAGTTTTTGA-CAA
61 A-TTC-A-A---AGACCAA-AACT---TGTTTA-CAA-A-TGAC--AAACT-A--TTTAGACCAA
* * * ** ** ** ** * * * *
5090 GTTCA-G-AAGTTCGTCCAAG-ATCCAA-GAGACAACCAA-T-TCT-CACG--TAGATAAGT-TT
108 -ATCATGCGATTTC--CTGAGCATGGAATG-TTCAAAAAATTATCTGAAGGAATGGAT-CGTCTT
* * * * * *
5145 --TTA-ATTCAGCG-ACCAAAACTTGTT-TACAA-AA-T-G-ACAAACTATTTAGATC
168 GAATACTTTAAG-GAACC-GAA---GTTATAAAAGAACTCGTA-AAA--GTTT-GA-C
* * *** ** * * *
5194 AAATTGTGCG-AT-TTC--CCCAGCATGGAATGTTCA-AAA-AATTGCTCAAAG-GAAT-GGATC
1 -AA--GTTCGAATGTTCGTCCAAG-AACCAA-G-AGAGAAACAATT-CTC-ACGTAAATAAG-T-
* * ** ** * * * *
5251 CTTCTGAATAC-TTG-TGAGAA-TTGAAGTTATAAATGA-AATCGTAAAAGTTT-GA--AAAGT-
56 -TT-TTAATTCAAAGACCAAAACTTG--TTTACAAATGACAAAC-T---A-TTTAGACCAAA-TC
** * * * ** * * ** *
5308 -T-CGGATGTT-C-GTCCAAGAACCAAG-AGAGAAACAATTCTCACGTAAATAAGTTTTTGA-CA
111 ATGC-GAT-TTCCTGAGCATGGA--ATGTTCA-AAA-AATTATC-TG-AAGGAA----TGGATC-
* ** * * * * *
5367 AGT-TTGGAAATTCGTCCAA-GAA-CAAAG--AGAGAAACAATTTTCACGTAAATAATTTTTTGA
163 -GTCTT-G-AATAC-TTTAAGGAACCGAAGTTATA-AAAGAA----CTCGT-AA-AA--GTTTGA
*
5427 T
215 C
* * ** * *
5428 AAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCAGACGTAACTAAGTTATTAATT-A
1 AAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* * * ** *
5492 ATAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTGACCACATGGTGTGATTTCTCT-AGCA
66 A-AGACCAAAACTTGTTTAC-AAATGACAAACTATTTAGACCAAATCATGCGATTTC-CTGAGCA
*** * * *
5556 TGGAATGTT-TGGAAATT-TGCTTAAAGGAATGGACCGTCTTGAATACTTTAAGGAACCTAAGTT
128 TGGAATGTTCAAAAAATTAT-C-TGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTT
* *
5619 ATAAAATAACTCGTGAAAGTTTGAC
191 ATAAAAGAACTCGTAAAAGTTTGAC
* * *
5644 AAGTTCGAAAGTTAGTCCAATAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
1 AAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* * *
5709 AACACCAAAACTTGTTTACAAACTGACAAACTATTTAGACCAAATTATGTGATTT-CTCGAGCAT
66 AAGACCAAAACTTGTTTACAAA-TGACAAACTATTTAGACCAAATCATGCGATTTCCT-GAGCAT
* * * * * * *
5773 GGAGTGTTCGAAAAATT-GCTCGAAGGAATAGATCTTCTTGAATACTTTTAGGAATCGAAGTTAT
129 GGAATGTTCAAAAAATTATCT-GAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT
* * *
5837 AAAAGAAATCGCAAAAATTTGAC
193 AAAAGAACTCGTAAAAGTTTGAC
* * * * * * * *
5860 AAGTTCGGATGTTCGCCCAAGAGCCAAGAGAGAAATAGTTCTTACGTCAATAAGATTTTAATT-A
1 AAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* * * * * * *
5924 GAAAACCAAAACATGTTTACGAAATGACAAACTTTTTAAACCATAA-GATTCGATTTTAC-GAGC
66 -AAGACCAAAACTTGTTTAC-AAATGACAAACTATTTAGACCA-AATCATGCGA-TTTCCTGAGC
* * * **
5987 ATGGAGTGTTCAAAAAATTCTC-GAAGGAATGGATCGTCTTGAATACTGTAAGGTGCCGAAGTTA
127 ATGGAATGTTCAAAAAATTATCTGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTA
* *
6051 TAAAAGAACTCGTCAAAGTTT-ATG
192 TAAAAGAACTCGTAAAAGTTTGA-C
* * * *
6075 AAGTTCAGAA-GTTCATCCAAGAACCAAGAGAGAAATAATTCTCATGTAAATAAGTTTTTAATTT
1 AAGTTC-GAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * * * * *
6139 AAAGACCAAATCTTGATTACAAAATAACAAACTATTCAGACCAAATGATGCGATTTCCCGAGCAT
65 AAAGACCAAAACTTGTTTAC-AAATGACAAACTATTTAGACCAAATCATGCGATTTCCTGAGCAT
* * * * * * *
6204 GGAAATCTTCGAGAAACT-GCTGAAGGAATGGATCGCCTTGAATACTTTAAGGAATCGAAGTTAT
129 GG-AATGTTCAAAAAATTATCTGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT
* ** *
6268 AAAATAACTATTAAAAGTTT-AA
193 AAAAGAACTCGTAAAAGTTTGAC
* * * * * *
6290 AATGTTCGAAAGTTCATCTAAGAACAAAGGGAGAAACAGTTCTCACGTAAATAAGTTTTTAATTC
1 AA-GTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * * * * *
6355 AAAGACCAAAA-TAT-TTTTCAAAACGACAAACTATTTAAACCAAATGATGCAATTTCCCGAGCA
65 AAAGACCAAAACT-TGTTTAC-AAATGACAAACTATTTAGACCAAATCATGCGATTTCCTGAGCA
* * * * * * * *
6418 AGGAATGTTCGAAAAAA--AGCTCGAAGGAATGGATCATCATGAATACCTTCAGTAATCGAAGTT
128 TGGAATGTTC-AAAAAATTATCT-GAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTT
* *
6481 ATAAATGAAATCGTAAAATGTTTGAC
191 ATAAAAGAACTCGTAAAA-GTTTGAC
* * * *
6507 AAGAT-GAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAAATAAGTTTTTGA--
1 AAGTTCGA-ATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAATAAGTTTTTAATT
*** * ** * * * * * *
6569 C-AAG-CTCGGTAGTTCGTCCA-AGAACTAAGAGAGAAGCAATACT-CACGTAAAT-A--AG-TT
64 CAAAGAC-CAAAACTT-GTTTACA-AA-T--GACA-AA-CTAT-TTAGAC-CAAATCATGCGATT
* * * *** * * ** *** * *
6626 T-TTGA-CAAGTTCGAAAGTTCATCCAA-GACCCAAGAGAGAACCAATTC-TCACGTAAATAAGT
119 TCCTGAGC-A--TGGAATGTTCAAAAAATTATCTGA-AG-GAATGGA-TCGT--CTTGAAT-A--
* * * * *
6687 TTTTAATTCAGCG-ACCAAAACTTGTTTACAAAAGGA--C--AAAATATTTAGACC
173 CTTT-A---AG-GAACC-GAA---G-TTATAAAAGAACTCGTAAAA-GTTT-GA-C
* * * * * * * * *
6738 AAATT--ATACGATT--TCC-TG-AGCATG-GAATGTTCAAAAAATTGCTCAAAG-GAAT-GGAT
1 AAGTTCGA-ATG-TTCGTCCAAGAACCAAGAG-A-G---AAACAATT-CTC-ACGTAAATAAG-T
* * * * * * ** * * *
6794 CCTTCTAAATGCTTGC-GAGAACTAAAGTTATAAAAGAAATTATAAA--AGTTT-GA--AAAGT-
56 --TT-TTAA---TT-CAAAGACCAAAACTTGT-TTACAAATGACAAACTA-TTTAGACCAAA-TC
** * * * ** * * ** *
6852 -T-CGGATGTT-C-GTCCAAGAACCAAG-AGAGAAACAATTCTCACGTAAATAATTTTTTGA-CA
111 ATGC-GAT-TTCCTGAGCATGGA--ATGTTCA-AAA-AATTATC-TG-AAGGAA----TGGATC-
* ** ** *** * * *
6911 AGT-TTGGAAATTCGTCCAA-GAACC-AAGAGAGTAACAATTTTCACGTAAATAATTTTTTGAT
163 -GTCTT-G-AATAC-TTTAAGGAACCGAAGTTA-TAA-AA-GAACTCGT-AA-AA--GTTTGAC
* * * *
6972 AAGTTCGGGA-GTTCGTCCAAGAACCAAGAGAGAAACAATTCACACGTAACTAAGTTATTAATT-
1 AAGTTC-GAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * * ** *
7035 AACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTGACCACATGGTGTGATTTCTCT-AGC
65 AA-AGACCAAAACTTGTTTAC-AAATGACAAACTATTTAGACCAAATCATGCGATTTC-CTGAGC
*** * * * *
7099 ATGGAATGTT-TGGAAATT-TGCTTAAAGGAATGAACCGTCTTGAATACTTTAAGGAACCTAAGT
127 ATGGAATGTTCAAAAAATTAT-C-TGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGT
* *
7162 TATAAAATAACTCGTGAAAGTTTGAC
190 TATAAAAGAACTCGTAAAAGTTTGAC
* * *
7188 AAGTTCGAAAGTTAGTCCAATAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
1 AAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* * * * **
7253 AACACCAAAACTTGTTTACAAATTGACAAACTATTTAGACAAAATTATGTGATTTCCCAAGCATG
66 AAGACCAAAACTTGTTTACAAA-TGACAAACTATTTAGACCAAATCATGCGATTTCCTGAGCATG
* * *
7318 GAATGTTCGAAAAATTA-CTAGAAAGGAATAGATCATCTTGAATACTTTAAGGAACCGAAGTTAT
130 GAATGTTCAAAAAATTATCT-G-AAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT
*
7382 AAAAGAAATCGTAAAAGTTTGAC
193 AAAAGAACTCGTAAAAGTTTGAC
* * *
7405 AAGTTCGGATGTTCGTCCAAGAGCCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTAATTCA
1 AAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* * * * * * *
7470 AAAACCAAAACATGTTTACGAAA-GTACAAACTTTTTAGACGATAA-GATTCGATATTAC-GAGC
66 AAGACCAAAACTTGTTTAC-AAATG-ACAAACTATTTAGACCA-AATCATGCGAT-TTCCTGAGC
* * * * * **
7532 ATGGAGTGTTCGAAAAATTCTC-GAAGGAATGGACCGTCTTGAATACTGTAAGGTGCCGAAGTTA
127 ATGGAATGTTCAAAAAATTATCTGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTA
*
7596 TAAAAGAACTCGTAAAAGTTTGAA
192 TAAAAGAACTCGTAAAAGTTTGAC
* *
7620 AAGTTCAGAA-GTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAACTTTTTAATT-
1 AAGTTC-GAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * * * * * * *
7683 AAAGACCAAATCCTGTTTACAAAATGACAAATTATTCAGACCAAATGATGTGATTTCCCGTGCAT
65 AAAGACCAAAACTTGTTTAC-AAATGACAAACTATTTAGACCAAATCATGCGATTTCCTGAGCAT
* * * * * * *
7748 GGAAATCTTCGAAAAACTACCCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCAAAGTTAT
129 GG-AATGTTCAAAAAATTATCTGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT
* *
7813 AAAACAACTCGTAAAAGTTT-AA
193 AAAAGAACTCGTAAAAGTTTGAC
* * * *
7835 AATGTTCGGAA-GCTT-GTCTAAGAACAAAGAGAGAAATAGTTCTCACGTAAATAAGTTTTTAAT
1 AA-GTTC-GAATG-TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
* *
7898 TCAAAGA-CAAAA-TAT-TTTTCAAAATGACAAACTATTTAGACCAAAT-GTGCGATTT-CTCGA
63 TCAAAGACCAAAACT-TGTTTAC-AAATGACAAACTATTTAGACCAAATCATGCGATTTCCT-GA
* *** * * * * *
7958 GCA-AGAAGTGTTTGGAAAA-TAGCTCGAAGGAATGGATTGTCATGAATACCTTCAGGAACCGAA
125 GCATGGAA-TGTTCAAAAAATTATCT-GAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
*
8021 GTTATAAAAGAAATCGTAAAATGTTTGAC
188 GTTATAAAAGAACTCGTAAAA-GTTTGAC
* * *
8050 AAGTTC-AGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAAATAAGTTTTTGA--
1 AAGTTCGA-ATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAATAAGTTTTTAATT
*** * ** * * * * *
8112 C-AAG-CTCGGTAGTTCGTCCA-AGAACTAAGAGAGAAGCAATACTCATGA--AAAT-A--AGTT
64 CAAAGAC-CAAAACTT-GTTTACA-AA-T--GACA-AA-C--TATTTA-GACCAAATCATGCGAT
* * ** ***** * ** *** * * *
8169 TTGGAC-AAGTTTGGAA-GTTTGTCCAA-GATCCAAGAGAGAACCAATTC-TCACGTAAATAAGT
118 TT--CCTGAGCATGGAATGTTCAAAAAATTATCTGA-AG-GAATGGA-TCGT--CTTGAAT-A-C
* * * *
8230 TTTAATTCAGCG-ACCAAAACTTGTTTACAAAAGGA--C--AAAACATTTAGACC
174 TTT-A---AG-GAACC-GAA---G-TTATAAAAGAACTCGTAAAA-GTTT-GA-C
* * * * * *
8280 AAATTGTGCG-AT-TTC--CC--G-AGCATAGA-ATGTTCAAAAAATTGCTCAAAG-GAAT-GGA
1 -AA--GTTCGAATGTTCGTCCAAGAACCA-AGAGA-G---AAACAATT-CTC-ACGTAAATAAG-
* *** * * * ** * * * *
8335 TCCTTCTGAATACTTGTGAGAACC-GAAGTTATAAAATAAATCGTA-AAA--GTTTGGA--AAGT
55 T--TT-T---TAATTCAAAG-ACCAAAACTTGT-TTACAAAT-G-ACAAACTATTTAGACCAAAT
** * * * ** * * ** *
8394 --T-CGGATGTT-C-GTCCAAGAACCAAG-AGAGAAACAATTCTCACGTAAATAAGTTTTTGA-C
110 CATGC-GAT-TTCCTGAGCATGGA--ATGTTCA-AAA-AATTATC-TG-AAGGAA----TGGATC
* ** * ** *** * * *
8452 AAGT-TTGGAATTTCGTCCAA-GAACTGAGAGAGA-AACAATTTTCACGTAAATAATTTTTTGAT
163 --GTCTT-GAA-TAC-TTTAAGGAACCGA-AGTTATAA-AA-GAACTCGT-AA-AA--GTTTGAC
* *
8514 AAGTTCGGAA-GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATT-
1 AAGTTC-GAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * ** ** *
8577 AATAGTCCAAAACTTGTTTACAGAATGACAAACTATTTTGACCACTTGGTGTGATTT-CTGTAGC
65 AA-AGACCAAAACTTGTTTACA-AATGACAAACTATTTAGACCAAATCATGCGATTTCCTG-AGC
*** * * * *
8641 ATGGAATGTT-TGGAAATT-TGCTTAAAGGAATGGACCGTCTCGAATACTTTAAGGAACCTAAGT
127 ATGGAATGTTCAAAAAATTAT-C-TGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGT
* *
8704 TATAAAATAACTCGTGAAAGTTTGAC
190 TATAAAAGAACTCGTAAAAGTTTGAC
* * *
8730 AAGTTCGAAAGTTTGTCCAATAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
1 AAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* * * * *
8795 AACACCAAAACTTGTTTACAAACTGACAAACTATTTAGACAAAATTATGTGATTTCCCGAGCATG
66 AAGACCAAAACTTGTTTACAAA-TGACAAACTATTTAGACCAAATCATGCGATTTCCTGAGCATG
* * * *
8860 GAATGTTCGAAAAATT-TCTAGAAAGGAATAGATCGTCTTGAATACTTTCAGGAACCAAAGTTAT
130 GAATGTTCAAAAAATTATCT-G-AAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT
*
8924 AAAAGAAAT--TACTAAAGTTTGAC
193 AAAAGAACTCGTA--AAAGTTTGAC
* ** * *
8947 AAGTTCGGATGTTCGTCCAAGAGTCAAGAGAGAAATAATTCTTACGTAAATAAGTTTTTAATTCA
1 AAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* * * * * *
9012 AAAACCAAAACATGTTTACGAAAGGACAAACTTTTTAGACCATAAT-ATTCGATTTTAC-GAGCA
66 AAGACCAAAACTTGTTTAC-AAATGACAAACTATTTAGACCA-AATCATGCGA-TTTCCTGAGCA
* * * * * * **
9075 CGGAGTGTTCGAAAAATTCT-TGAAGGAATGGACCGTCTTGAATACTATAAGGTGCCGAAGTTAT
128 TGGAATGTTCAAAAAATTATCTGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT
* *
9139 AACAGAACTCGTAAAAGTTTGAA
193 AAAAGAACTCGTAAAAGTTTGAC
* * * * *
9162 AAGTTCAGAA-CTTCATCCAAGAACCAAGAGGGAAACAATTCTCACGTAAATAACTTTTTAATTG
1 AAGTTC-GAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * * * * *
9226 AAAGACCAAATCTTGTTTACACAATGACAAATTATTCAGACCAAATGATGTGATTTCCCGAGCAT
65 AAAGACCAAAACTTGTTTACA-AATGACAAACTATTTAGACCAAATCATGCGATTTCCTGAGCAT
* * ** * * *
9291 GGAAT-TCTTAGAAAAACTGCCCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCAAAGTTA
129 GGAATGT-TCA-AAAAATTATCTGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTA
* *
9355 TAAAACAACTCGTAAAAGTTT-AA
192 TAAAAGAACTCGTAAAAGTTTGAC
* * * * * *
9378 AATGTTCGAAAT-CTCGTCTAAGAACAAAGAGAAAAACAGTTCTCATGTAAATAAGTTTTTAATT
1 AA-GTTCG-AATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
* *
9442 CAAAGACCAAAA-TAT-TTTTCAAAATGACAAACTATTTAGACCAAATGATGCGATTT-CTCGAG
64 CAAAGACCAAAACT-TGTTTAC-AAATGACAAACTATTTAGACCAAATCATGCGATTTCCT-GAG
* ** * * *
9504 CAAGGAATGTTCGGAAAA-TAGCTCGAAGGAATGGATCGTCATGAATAGC-TTCAGGAACCGAAG
126 CATGGAATGTTCAAAAAATTATCT-GAAGGAATGGATCGTCTTGAATA-CTTTAAGGAACCGAAG
*
9567 TTATAAAAGAAATCGTAAAAAGTTTGAC
189 TTATAAAAGAACTCGT-AAAAGTTTGAC
9595 AAGTTC-AGATGTTCGTCCAAGAACCAAGAG
1 AAGTTCGA-ATGTTCGTCCAAGAACCAAGAG
9625 TTACATAAAA
Statistics
Matches: 4044, Mismatches: 979, Indels: 1004
0.67 0.16 0.17
Matches are distributed among these distances:
212 9 0.00
213 78 0.02
214 220 0.05
215 896 0.22
216 1146 0.28
217 719 0.18
218 70 0.02
219 20 0.00
220 33 0.01
221 40 0.01
222 35 0.01
223 23 0.01
224 21 0.01
225 6 0.00
226 21 0.01
227 66 0.02
228 62 0.02
229 53 0.01
230 57 0.01
231 97 0.02
232 79 0.02
233 90 0.02
234 52 0.01
235 33 0.01
236 42 0.01
237 27 0.01
238 15 0.00
239 18 0.00
240 14 0.00
241 2 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (215 bp):
AAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
AAGACCAAAACTTGTTTACAAATGACAAACTATTTAGACCAAATCATGCGATTTCCTGAGCATGG
AATGTTCAAAAAATTATCTGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAA
AGAACTCGTAAAAGTTTGAC
Found at i:4364 original size:986 final size:985
Alignment explanation
Indices: 2905--4805 Score: 2278
Period size: 986 Copynumber: 1.9 Consensus size: 985
2895 ATAAGTTTGA
* * *
2905 AAGTTCGTCCAAGAACCGAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAACACCAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATTAATTCAAACACCAA
* * *
2970 AACTTGTTTAGAAACTGACAAACTATTTAGACAAAATTATGTGATTTCCCGAGCATGGAATGTTC
66 AACTTGTTTACAAAATGACAAACTATTTAGACAAAATGATGTGATTTCCCGAGCATGGAATGTTC
* * *
3035 GAAAAATTGCTAGAAAGGAATAGATCATCTTGAATACTTTCAGGAACCAAAGTTATAAAAGAAAT
131 GAAAAATTGCTACAAAGGAATAGATCATCTTGAAAACTTTAAGGAACCAAAGTTATAAAAGAAAT
* * * *
3100 CGCAAAAGTTTGACAAGTTCAGATGTTCATCCAAGAGCCAAGTGAGAAACAATTCTTACATAAAT
196 CGCAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACATAAAT
* * **
3165 AAGTTTTTAATTCAAAAACCAAAACATGTTTACGAAAGGACAAACTGTTTAGACCCTACGATGCA
261 AAGTTTTTAATTCAAAAACCAAAACATGTTTACGAAAGAACAAACTATTTAGACCAAACGATGCA
* ** * *
3230 ATTTTACGAGCATGAAGTTTTCGAAAAATTCTCGAAGGAATGGACCGTCTTGAATATTGTAAGGT
326 ATTTTACGAGCATG-AGTTTTCAAAAAATTCTCGAAGGAAAAGACCATCTTGAATATTGTAAGGA
* *
3295 GCCGAAGTTATAAAAGAACTCGTAAAAGTTGGAAAAGTTCAGAAGTTCATCCAAGAACCAAGAGA
390 ACCGAAGTTATAAAAGAAATCGTAAAAGTTGGAAAAGTTCAGAAGTTCATCCAAGAACCAAGAGA
* * *
3360 GAAACAATTCTCACGTAAATAACTTTTTAATT-AAAAGAACAAATCCTGTTTACAAAATGAC-A-
455 GAAACAATTATCACGTAAATAACTTTTTAATTCAAAA-AACAAAACATGTTTACAAAATGACAAC
* * *
3422 TTATTCAGACCAAATGATGTGATTTCT-CGAGCA-TGGAAATCTTCGAAAAACTGCCCGAAGGAA
519 TT-TTCAGACCAAACGATGCGATTT-TACGAGCACT-G-AATCTTCGAAAAA-TGCCCAAAGGAA
* *
3485 TGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAACAACTCGTAAAAGTTT-AAAATGTT
579 TGGATCGTCTTGAATACTGTAAGGAACCGAAGTTATAAAACAACTCGTAAAAGTTTGAAAA-GTT
* * * * *
3549 CGGAAGCT-CATCTAAGAACAAAGAGAGAAACAGTTCTCACGTAAATAAGTTTTTAATTCAAAGA
643 CAGAAG-TACATCCAAGAACAAAGAGAAAAACAATTCTCACGTAAATAAATTTTTAATTCAAAGA
* * * * *
3613 CCAAA--ATATTTTTCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCTAGCAAGG-A
707 CCAAATCATA-TATACAAAATGACAAACTATTCAGACCAAATGATGCGATTTCCCGAGCAAGGAA
* ** * * *
3675 ATGTTCGGAAAATAACTCGAAGGAATGGATCGTCATGAATACCTTCAGGAATCGAAGTTATAAAA
771 ATCTTCAAAAAATAACCCGAAGGAATGGATCGCCATGAATACCTTAAGGAATCGAAGTTATAAAA
* * * * *
3740 GAAATCGTAAAAAGTTTGACAA-GTTTAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
836 CAAATCGT-AAAAGTTT-AAAATGTTCAGATGTTCGTCCAAGAACAAAAAGAGAAACAATTCTCA
3804 CGTAAATAAGTTTTTGACAAGTTNGGAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACAT
899 CGTAAATAAGTTTTTGACAAGTT-GGAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACAT
3869 AAATAAGTTTTCGATAAGTTCAG
963 AAATAAGTTTTCGATAAGTTCAG
* * * **
3892 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAACTAAGTTATTAATT-ACAGTCCAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATTAATTCAAACACCAA
* * * * * *
3956 AACTTGTTTACAAAATGACAAACTATTTTGACCACATGGT-TAGTTTTCTCGAGCATGGAAATGT
66 AACTTGTTTACAAAATGACAAACTATTTAGACAAAATGATGT-GATTTCCCGAGCATGG-AATGT
* * * * ** *
4020 TTGGAAATTTGCT-CAAAGGAATGGATTGTCTTGAAAACTTTAAGGAACCTAAGTTATAAAAGAA
129 TCGAAAAATTGCTACAAAGGAATAGATCATCTTGAAAACTTTAAGGAACCAAAGTTATAAAAGAA
* ** * * *
4084 CTCGTGAAAGTTTGACAAGTTC-GAAAGTTCATCCAAGAATCGAGAGAGAAACAATTCTCACGTA
194 ATCGCAAAAGTTTGACAAGTTCAG-AAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACATA
* ** * *
4148 AATAAGTTTTTAATTCAAACACCAAAAGTTGTTTAC-AAACTAACAAACTATTTATACCAAATC-
258 AATAAGTTTTTAATTCAAAAACCAAAACATGTTTACGAAA-GAACAAACTATTTAGACCAAA-CG
* * * * *
4211 ATGCGA-TTTCCTGAGCATG-GTATGTTCAAAAAATTTTCTGAAGTAAAAGATCATCTTGAATAC
321 ATGCAATTTTAC-GAGCATGAGT-T-TTCAAAAAATTCTC-GAAGGAAAAGACCATCTTGAATA-
* * * ** * * *
4274 TT-TCAGGAACCGAAGTTATGAAAGAAATCGTAAAAGTTTGACGAGTTCGGATGTTCGTCCAAGA
381 TTGTAAGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTGGAAAAGTTCAGAAGTTCATCCAAGA
* * * * * * *
4338 GCCAA-AGAGAAACAGTTATTACGTAAATAAGTTTTTAATTCATAAACCAAAACATGTTTACGAA
446 ACCAAGAGAGAAACAATTATCACGTAAATAACTTTTTAATTCAAAAAACAAAACATGTTTACAAA
* * * * * *
4402 ATGACAAACTTTTTAGACCATACGATGCGATTTTACGAGCACTGAGTGTTCGAAAAATTCTCAAA
511 ATGAC-AACTTTTCAGACCAAACGATGCGATTTTACGAGCACTGAATCTTCGAAAAATGCCCAAA
* ** * * *
4467 GGAATGGATTGTCTTGAATACTGTAAGGCGCCGAAGTTATAAAAGATCTCGTAAAAGTTTGAGAA
575 GGAATGGATCGTCTTGAATACTGTAAGGAACCGAAGTTATAAAACAACTCGTAAAAGTTTGAAAA
* * *
4532 GTTCAGAAGTACATCCACGAACCAAGAGAAAAACAATTCTCACGTAAATAAATTTTTAATTGAAA
640 GTTCAGAAGTACATCCAAGAACAAAGAGAAAAACAATTCTCACGTAAATAAATTTTTAATTCAAA
* * *
4597 GACCAAATCCTATATACAAATTGACAAACTATTCAGACCAAATGATGCGATTTCCCGAGCATGGA
705 GACCAAATCATATATACAAAATGACAAACTATTCAGACCAAATGATGCGATTTCCCGAGCAAGGA
** * *
4662 AATCTTCAAAAAATTGCCCGAAGGAATGGATCGCCTTGAATACTTTAAGGAATCGAAGTTATAAA
770 AATCTTCAAAAAATAACCCGAAGGAATGGATCGCCATGAATACCTTAAGGAATCGAAGTTATAAA
* * * **
4727 ACAACTCGTAAAAGTTTAAAATGTTCGGATGTTCGTCTAAGAACAAAAAGAGAAACTGTTCTCAC
835 ACAAATCGTAAAAGTTTAAAATGTTCAGATGTTCGTCCAAGAACAAAAAGAGAAACAATTCTCAC
4792 GTAAATAAGTTTTT
900 GTAAATAAGTTTTT
4806 AATTCAAAGA
Statistics
Matches: 763, Mismatches: 129, Indels: 44
0.82 0.14 0.05
Matches are distributed among these distances:
984 2 0.00
985 11 0.01
986 395 0.52
987 260 0.34
988 92 0.12
989 3 0.00
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (985 bp):
AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATTAATTCAAACACCAA
AACTTGTTTACAAAATGACAAACTATTTAGACAAAATGATGTGATTTCCCGAGCATGGAATGTTC
GAAAAATTGCTACAAAGGAATAGATCATCTTGAAAACTTTAAGGAACCAAAGTTATAAAAGAAAT
CGCAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACATAAAT
AAGTTTTTAATTCAAAAACCAAAACATGTTTACGAAAGAACAAACTATTTAGACCAAACGATGCA
ATTTTACGAGCATGAGTTTTCAAAAAATTCTCGAAGGAAAAGACCATCTTGAATATTGTAAGGAA
CCGAAGTTATAAAAGAAATCGTAAAAGTTGGAAAAGTTCAGAAGTTCATCCAAGAACCAAGAGAG
AAACAATTATCACGTAAATAACTTTTTAATTCAAAAAACAAAACATGTTTACAAAATGACAACTT
TTCAGACCAAACGATGCGATTTTACGAGCACTGAATCTTCGAAAAATGCCCAAAGGAATGGATCG
TCTTGAATACTGTAAGGAACCGAAGTTATAAAACAACTCGTAAAAGTTTGAAAAGTTCAGAAGTA
CATCCAAGAACAAAGAGAAAAACAATTCTCACGTAAATAAATTTTTAATTCAAAGACCAAATCAT
ATATACAAAATGACAAACTATTCAGACCAAATGATGCGATTTCCCGAGCAAGGAAATCTTCAAAA
AATAACCCGAAGGAATGGATCGCCATGAATACCTTAAGGAATCGAAGTTATAAAACAAATCGTAA
AAGTTTAAAATGTTCAGATGTTCGTCCAAGAACAAAAAGAGAAACAATTCTCACGTAAATAAGTT
TTTGACAAGTTGGAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTCG
ATAAGTTCAG
Found at i:5042 original size:63 final size:63
Alignment explanation
Indices: 4957--5146 Score: 251
Period size: 62 Copynumber: 3.0 Consensus size: 63
4947 TCGTAAAATG
* *
4957 TTTGACAAGTTCAGAT-GTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAAATAAGTT
1 TTTGACAAGTTCAGATAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAATAAGTT
* * * **
5020 TTTGACAAGCTC-GATAGTTCGTCCAAGAACTAAGAGAGAAGCAACACTCACGTAAATAAGTT
1 TTTGACAAGTTCAGATAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
5082 TTTGACAAGTTCAGA-AGTTCGTCCAAGATCCAAGAGACAACCAATTCTCACGTAGATAAGTT
1 TTTGACAAGTTCAGATAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
5144 TTT
1 TTT
5147 AATTCAGCGA
Statistics
Matches: 110, Mismatches: 15, Indels: 5
0.85 0.12 0.04
Matches are distributed among these distances:
62 66 0.60
63 44 0.40
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.26
Consensus pattern (63 bp):
TTTGACAAGTTCAGATAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:5381 original size:62 final size:62
Alignment explanation
Indices: 5298--5483 Score: 248
Period size: 62 Copynumber: 3.0 Consensus size: 62
5288 ATCGTAAAAG
* * *
5298 TTTGAAAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
5360 TTTGACAAGTTTGGAAA-TTCGTCCAAGAACAAAGAGAGAAACAATTTTCACGTAAATAATTT
1 TTTGACAAG-TTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * ** *
5422 TTTGATAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCAGACGTAACTAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
5484 ATTAATTAAT
Statistics
Matches: 106, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
61 6 0.06
62 96 0.91
63 4 0.04
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (62 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:5503 original size:340 final size:339
Alignment explanation
Indices: 4789--5702 Score: 1101
Period size: 340 Copynumber: 2.7 Consensus size: 339
4779 AAACTGTTCT
* *
4789 CACGTAAATAAGTTTTTAATTCAAAGACCAAAA-TAGTTTTCAAAATGACAAACTATTTAGACCA
1 CACGT-AATAAGTTTTTAATT-AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * * * *
4853 AA-TGATGCGATTTCTCGAGTAAGGAATGTTCAGATAATAGCTCGAAGGAATGGGT-CGTCATGA
64 AATTG-TGCGATTTCTCCAGCATGGAATGTTCAGAAAATTGCTCAAAGGAATGGATCCGTCATGA
* * * * *
4916 ATACCTTCAGGAACCGAAGTTATAAAAGAAATCGTAAAATGTTTGACAAGTTCAGATGTTCGTCC
128 ATACTTTAAGGAACTGAAGTTATAAATGAAATCGTAAAA-GTTTGACAAGTTCGGATGTTCGTCC
* * *
4981 AAGAACCAAGAGAGAAACAATTCTTACATAAAATAAGTTTTTGACAAGCTCGATAGTTCGTCCAA
192 AAGAACCAAGAGAGAAACAATTCTCACGT-AAATAAGTTTTTGACAAGCTCGATAATTCGTCCAA
* * * *
5046 GAACTAAGAGAGAAGCAACACTCACGTAAATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAT
256 GAACAAAGAGAGAAACAACACTCACGTAAATAAGTTTTTGACAAGTTCAGAAGTTCATCCAAGAA
* *
5111 CCAAGAGACAACCAATTCT
321 CCAAGAGACAAACAATTCA
** *
5130 CACGTAGATAAGTTTTTAATTCAGCGACCAAAACTTGTTTACAAAATGACAAACTATTTAGATCA
1 CACGTA-ATAAGTTTTTAATT-AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * *
5195 AATTGTGCGATTTCCCCAGCATGGAATGTTCAAAAAATTGCTCAAAGGAATGGATCCTTC-TGAA
64 AATTGTGCGATTTCTCCAGCATGGAATGTTCAGAAAATTGCTCAAAGGAATGGATCCGTCATGAA
* * *
5259 TACTTGTGA-GAATTGAAGTTATAAATGAAATCGTAAAAGTTTGAAAAGTTCGGATGTTCGTCCA
129 TACTT-TAAGGAACTGAAGTTATAAATGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCA
* *
5323 AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGA-AATTCGTCCAAG
193 AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAG-CTCGATAATTCGTCCAAG
*** * *
5387 AACAAAGAGAGAAACAATTTTCACGTAAATAATTTTTTGATAAGTTC-GAAAGTTCATCCAAGAA
257 AACAAAGAGAGAAACAACACTCACGTAAATAAGTTTTTGACAAGTTCAG-AAGTTCATCCAAGAA
*
5451 CCAAGAGAGAAACAATTCA
321 CCAAGAGACAAACAATTCA
* * * *
5470 GACGTAACTAAGTTATTAATTAATAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTGACCA
1 CACGTAA-TAAGTTTTTAATTAA-AGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * ** * * *
5535 CATGGTGTGATTTCTCTAGCATGGAATGTTTGGAAATTTGCTTAAAGGAATGGA-CCGTCTTGAA
64 AATTGTGCGATTTCTCCAGCATGGAATGTTCAGAAAATTGCTCAAAGGAATGGATCCGTCATGAA
* * * * *
5599 TACTTTAAGGAACCT-AAGTTATAAAAT-AACTCGTGAAAGTTTGACAAGTTCGAAAGTTAGTCC
129 TACTTTAAGGAA-CTGAAGTTAT-AAATGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCC
*
5662 AATAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
192 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
5703 AATTCAAACA
Statistics
Matches: 494, Mismatches: 66, Indels: 27
0.84 0.11 0.05
Matches are distributed among these distances:
339 9 0.02
340 286 0.58
341 87 0.18
342 105 0.21
343 7 0.01
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (339 bp):
CACGTAATAAGTTTTTAATTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA
TTGTGCGATTTCTCCAGCATGGAATGTTCAGAAAATTGCTCAAAGGAATGGATCCGTCATGAATA
CTTTAAGGAACTGAAGTTATAAATGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGA
ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGCTCGATAATTCGTCCAAGAACA
AAGAGAGAAACAACACTCACGTAAATAAGTTTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAG
AGACAAACAATTCA
Found at i:6232 original size:431 final size:430
Alignment explanation
Indices: 5430--6566 Score: 1137
Period size: 431 Copynumber: 2.6 Consensus size: 430
5420 TTTTTGATAA
* * * ** *
5430 GTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCAGACGTAACTAAG-TTATTAATT-AA
1 GTTCGAAAGTTCACCCAAGAACAAAGAGAGAAACAGTTCTCACGTAAATAAGATT-TTAATTCAA
** * * ** * * ** * * *
5493 TAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTGACCACATGGTGTGATTTCTCTAGCATG
65 -AAACCAAAACAT-TTTACAAAACGACAAACTATTTAAACCAAATGATGCAATTTCACGAGCAAG
* * *** ** * * *
5558 GAATGTTTGGAAATTTGCTTAAAGGAATGGACCGTCTTGAATACTTTAAGGAACCTAAGTTATAA
128 GAATGTTCGAAAAAAAGCTCGAAGGAATGGATCGTCTTGAATAC-TTAAGGTACCGAAGTTATAA
* * *
5623 AATAACTCGTGAAAGTTTGACAAGTTC-GAAAGTT-AGTCCAATAACCAAGAGAGAAACAATTCT
192 AAGAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCA-TCCAAGAACCAAGAGAGAAACAATTCT
* * * * *
5686 CACGTAAATAAGTTTTTAATTCAAACACCAAAACTTGTTTACAAACTGACAAACTATTTAGACCA
255 CATGTAAATAAGTTTTTAATTCAAACACCAAAACTTGATTACAAAATAACAAACTATTCAGACCA
* * * * * * **
5751 AATTATGTGATTTCTCGAGCATGGAGTGTTCGAAAAATTGCTCGAAGGAATAGATCTTCTTGAAT
320 AATGATGCGATTTCCCGAGCATGGAATCTTCGAAAAACTGCTCGAAGGAATAGATCGCCTTGAAT
* * *
5816 ACTTTTAGGAATCGAAGTTATAAAAGAAATCGCAAAAATTTGACAA-
385 ACTTTAAGGAATCGAAGTTATAAAAGAAATAGCAAAAATTT-AAAAT
* * * * * * * *
5862 GTTCGGATGTTCGCCCAAGAGCCAAGAGAGAAATAGTTCTTACGTCAATAAGATTTTAATT-AGA
1 GTTCGAAAGTTCACCCAAGAACAAAGAGAGAAACAGTTCTCACGTAAATAAGATTTTAATTCA-A
* * * * * * *
5926 AAACCAAAACATGTTTACGAAATGACAAACTTTTTAAACCATAA-GATTCGATTTTACGAGCATG
65 AAACCAAAACAT-TTTACAAAACGACAAACTATTTAAACCA-AATGATGCAATTTCACGAGCAAG
* ** *
5990 GAGTGTTC-AAAAAATTCTCGAAGGAATGGATCGTCTTGAATACTGTAAGGTGCCGAAGTTATAA
128 GAATGTTCGAAAAAAAGCTCGAAGGAATGGATCGTCTTGAATACT-TAAGGTACCGAAGTTATAA
* * *
6054 AAGAACTCGTCAAAGTTT-ATGAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAATAATTCTC
192 AAGAACTCGTAAAAGTTTGA-CAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTC
* * *
6118 ATGTAAATAAGTTTTTAATTTAAAGACCAAATCTTGATTACAAAATAACAAACTATTCAGACCAA
256 ATGTAAATAAGTTTTTAATTCAAACACCAAAACTTGATTACAAAATAACAAACTATTCAGACCAA
* *
6183 ATGATGCGATTTCCCGAGCATGGAAATCTTCGAGAAACTGCT-GAAGGAATGGATCGCCTTGAAT
321 ATGATGCGATTTCCCGAGCATGG-AATCTTCGAAAAACTGCTCGAAGGAATAGATCGCCTTGAAT
* * ** *
6247 ACTTTAAGGAATCGAAGTTATAAAATAACTATTAAAAGTTTAAAAT
385 ACTTTAAGGAATCGAAGTTATAAAAGAAATAGCAAAAATTTAAAAT
* * * *
6293 GTTCGAAAGTTCATCTAAGAACAAAGGGAGAAACAGTTCTCACGTAAATAAGTTTTTAATTCAAA
1 GTTCGAAAGTTCACCCAAGAACAAAGAGAGAAACAGTTCTCACGTAAATAAGATTTTAATTCAAA
* * * *
6358 GACCAAAATATTTTTCAAAACGACAAACTATTTAAACCAAATGATGCAATTTCCCGAGCAAGGAA
66 AACCAAAACATTTTACAAAACGACAAACTATTTAAACCAAATGATGCAATTTCACGAGCAAGGAA
* * * * *
6423 TGTTCGAAAAAAAGCTCGAAGGAATGGATCATCATGAATACCTTCA-GTAATCGAAGTTATAAAT
131 TGTTCGAAAAAAAGCTCGAAGGAATGGATCGTCTTGAATA-CTTAAGGT-ACCGAAGTTATAAAA
* * * * *
6487 GAAATCGTAAAATGTTTGACAAGATGAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTAC
194 GAACTCGTAAAA-GTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTC-T-C
*
6552 AT-AAAATAAGTTTTT
256 ATGTAAATAAGTTTTT
6567 GACAAGCTCG
Statistics
Matches: 578, Mismatches: 109, Indels: 35
0.80 0.15 0.05
Matches are distributed among these distances:
429 2 0.00
430 53 0.09
431 341 0.59
432 161 0.28
433 18 0.03
434 3 0.01
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (430 bp):
GTTCGAAAGTTCACCCAAGAACAAAGAGAGAAACAGTTCTCACGTAAATAAGATTTTAATTCAAA
AACCAAAACATTTTACAAAACGACAAACTATTTAAACCAAATGATGCAATTTCACGAGCAAGGAA
TGTTCGAAAAAAAGCTCGAAGGAATGGATCGTCTTGAATACTTAAGGTACCGAAGTTATAAAAGA
ACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCATGTA
AATAAGTTTTTAATTCAAACACCAAAACTTGATTACAAAATAACAAACTATTCAGACCAAATGAT
GCGATTTCCCGAGCATGGAATCTTCGAAAAACTGCTCGAAGGAATAGATCGCCTTGAATACTTTA
AGGAATCGAAGTTATAAAAGAAATAGCAAAAATTTAAAAT
Found at i:6645 original size:62 final size:62
Alignment explanation
Indices: 6517--6690 Score: 240
Period size: 62 Copynumber: 2.8 Consensus size: 62
6507 AAGATGAGAT
* * **
6517 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAAATAAGTTTTTGACAAGCTCGGTA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAATAAGTTTTTGACAAGCTCGAAA
* * * *
6580 GTTCGTCCAAGAACTAAGAGAGAAGCAATACTCACGTAAATAAGTTTTTGACAAGTTCGAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGCTCGAAA
* * *
6642 GTTCATCCAAGACCCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTT
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
6691 AATTCAGCGA
Statistics
Matches: 98, Mismatches: 13, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
62 66 0.67
63 32 0.33
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.25
Consensus pattern (62 bp):
GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGCTCGAAA
Found at i:6925 original size:62 final size:62
Alignment explanation
Indices: 6842--7020 Score: 268
Period size: 62 Copynumber: 2.9 Consensus size: 62
6832 ATTATAAAAG
* **
6842 TTTGAAAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAATTT
1 TTTGACAAGTTCGGAAATTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAATTT
* * *
6904 TTTGACAAGTTTGGAAATTCGTCCAAGAACCAAGAGAGTAACAATTTTCACGTAAATAATTT
1 TTTGACAAGTTCGGAAATTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAATTT
* * * *
6966 TTTGATAAGTTCGGGAGTTCGTCCAAGAACCAAGAGAGAAACAATTCACACGTAA
1 TTTGACAAGTTCGGAAATTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA
7021 CTAAGTTATT
Statistics
Matches: 104, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 104 1.00
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAATTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAATTT
Found at i:7001 original size:340 final size:338
Alignment explanation
Indices: 6293--7246 Score: 1073
Period size: 340 Copynumber: 2.8 Consensus size: 338
6283 AGTTTAAAAT
* * * * *
6293 GTTCGAAAGTTCATCTAAGAACAAAGGGAGAAACAGTTCTCACGTAAATAAGTTTTTAATTCAAA
1 GTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAC
* * * * *
6358 GACCAAAA-TAT-TTTTCAAAACGACAAACTATTTAAACCAAATGATGCAATTTCCCGAGCAAGG
66 GACCAAAACT-TGTTTACAAAACGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGG
* * *
6421 AATGTTCGAAAAAA-AGCTCGAAGGAATGGAT-CATCATGAATACCTTCAGTAATCGAAGTTATA
130 AATGTTC-AAAAAATTGCTCAAAGGAATGGATCCATCATGAATA-CTTCAG-AA-CTAAGTTATA
* *
6484 AATGAAATCGTAAAATGTTTGACAAGAT-GAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTC
191 AAAGAAATCGTAAAA-GTTTGACAAGTTCG-GATGTTCGTCCAAGAACCAAGAGAGAAACAATTC
* * * * *
6548 TTACATAAAATAAGTTTTTGACAAGCTCGGTAGTTCGTCCAAGAACTAAGAGAGAAGCAATACTC
254 TCACGT-AAATAAGTTTTTGACAAGCTCGGAAATTCGTCCAAGAACCAAGAGAGAAGCAATACTC
6613 ACGTAAATAAGTTTTTGACAA
318 ACGTAAATAAGTTTTTGACAA
* * *
6634 GTTCGAAAGTTCATCCAAGACCCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCAGC
1 GTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAC
* * * *
6699 GACCAAAACTTGTTTACAAAAGGACAAAATATTTAGACCAAATTATACGATTTCCTGAGCATGGA
66 GACCAAAACTTGTTTACAAAACGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGA
* * *
6764 ATGTTCAAAAAATTGCTCAAAGGAATGGATCCTTC-TAAATGCTTGCGAGAACTAAAGTTATAAA
131 ATGTTCAAAAAATTGCTCAAAGGAATGGATCCATCATGAATACTT-C-AGAACT-AAGTTATAAA
** *
6828 AGAAATTATAAAAGTTTGAAAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
193 AGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
* * * **
6893 GTAAATAATTTTTTGACAAGTTTGGAAATTCGTCCAAGAACCAAGAGAGTAA-CAATTTTCACGT
258 GTAAATAAGTTTTTGACAAGCTCGGAAATTCGTCCAAGAACCAAGAGAG-AAGCAATACTCACGT
* *
6957 AAATAATTTTTTGATAA
322 AAATAAGTTTTTGACAA
** * * * *
6974 GTTCGGGAGTTCGTCCAAGAACCAAGAGAGAAACAATTCACACGTAACTAAGTTATTAATT-AAC
1 GTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAC
* * * * * *
7038 AGTCCAAAACTTGTTTACAAAATGACAAACTATTTTGACCACATGGTGTGATTTCTCT-AGCATG
66 -GACCAAAACTTGTTTACAAAACGACAAACTATTTAGACCAAATGATGCGATTTC-CTGAGCATG
*** * * * * * *
7102 GAATGTTTGGAAATTTGCTTAAAGGAAT-GAACCGTCTTGAATACTTTAAGGAACCTAAGTTATA
129 GAATGTTCAAAAAATTGCTCAAAGGAATGGATCCATCATGAATAC-TTCA-GAA-CTAAGTTATA
* * * * * * *
7166 AAATAACTCGTGAAAGTTTGACAAGTTCGAAAGTTAGTCCAATAACCAAGAGAGAAACAATTCTC
191 AAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
7231 ACGTAAATAAGTTTTT
256 ACGTAAATAAGTTTTT
7247 AATTCAAACA
Statistics
Matches: 519, Mismatches: 79, Indels: 31
0.83 0.13 0.05
Matches are distributed among these distances:
339 9 0.02
340 279 0.54
341 132 0.25
342 94 0.18
343 5 0.01
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (338 bp):
GTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAC
GACCAAAACTTGTTTACAAAACGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGA
ATGTTCAAAAAATTGCTCAAAGGAATGGATCCATCATGAATACTTCAGAACTAAGTTATAAAAGA
AATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
AATAAGTTTTTGACAAGCTCGGAAATTCGTCCAAGAACCAAGAGAGAAGCAATACTCACGTAAAT
AAGTTTTTGACAA
Found at i:7501 original size:217 final size:216
Alignment explanation
Indices: 6966--9624 Score: 1632
Period size: 217 Copynumber: 12.2 Consensus size: 216
6956 TAAATAATTT
* * * * *
6966 TTTGATAAGTTCGGGAGTTCGTCCAAGAACCAAGAGAGAAACAATTCACACGTAACTAAGTTATT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * * *
7031 AATT-AACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTGACCACATGGTGTGATTTCTC
66 AATTCAA-AGACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCC
* * * * * ** * * *
7095 TAGCATGGAATGTTTGGAAATTTGCTTAAAGGAATGAACCGTCTTGAATACTTTAAGGAACCTAA
130 GAGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
* *
7160 GTTATAAAATAACTCGTGAAAG
195 GTTATAAAAGAACTCGTAAAAG
* * *
7182 TTTGACAAGTTCGAAAGTTAGTCCAATAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * * *
7247 AATTCAAACACCAAAACTTGTTTACAAATTGACAAACTATTTAGACAAAATTATGTGATTTCCCA
66 AATTCAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCG
* * *
7312 AGCATGGAATGTTCGAAAAATTACTAGAAAGGAATAGATCATCTTGAATACTTTAAGGAACCGAA
131 AGCATGGAATGTTCGAAAAATTACTCG-AAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
*
7377 GTTATAAAAGAAATCGTAAAAG
195 GTTATAAAAGAACTCGTAAAAG
* * *
7399 TTTGACAAGTTCGGATGTTCGTCCAAGAGCCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
7464 AATTCAAAAACCAAAACATGTTTACGAAA-GTACAAACTTTTTAGACGATAA-GAT-TCGATATT
66 AATTCAAAGACCAAAACATGTTTACAAAATG-ACAAACTATTTAGACCA-AATGATGT-GAT-TT
* * * * **
7526 -ACGAGCATGGAGTGTTCGAAAAATT-CTCGAAGGAATGGACCGTCTTGAATACTGTAAGGTGCC
127 CCCGAGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC
7589 GAAGTTATAAAAGAACTCGTAAAAG
192 GAAGTTATAAAAGAACTCGTAAAAG
* * * *
7614 TTTGAAAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAACTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
7679 AATT-AAAGACCAAATCCTGTTTACAAAATGACAAATTATTCAGACCAAATGATGTGATTTCCCG
66 AATTCAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCG
* * * * * *
7743 TGCATGGAAATCTTCGAAAAACTACCCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCAAA
131 AGCATGG-AATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
*
7808 GTTATAAAACAACTCGTAAAAG
195 GTTATAAAAGAACTCGTAAAAG
* * * * *
7830 TTT-AAAATGTTCGGAAGCTT-GTCTAAGAACAAAGAGAGAAATAGTTCTCACGTAAATAAGTTT
1 TTTGACAA-GTTCGGAAG-TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * * *
7893 TTAATTCAAAGA-CAAAATAT-TTTTCAAAATGACAAACTATTTAGACCAAATG-TGCGATTTCT
64 TTAATTCAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCC
* * * * * * *
7955 CGAGCA-AGAAGTGTTTGGAAAA-TAGCTCGAAGGAATGGATTGTCATGAATACCTTCAGGAACC
129 CGAGCATGGAA-TGTTCGAAAAATTA-CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACC
*
8018 GAAGTTATAAAAGAAATCGTAAAATG
192 GAAGTTATAAAAGAACTCGTAAAA-G
* * * *
8044 TTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAAATAAGTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAATAAGTTTT
* ** * * *** *
8109 TGACAAGCTCGGTAGTTCGTCCAAGAACTAAGAGAGAAGCAATACTCATGA-AAA-TAAGTTTTG
65 T---AA-TTC---A--AAGACCAA-AAC--A-TGTTTA-CAA-A---ATGACAAACT-A--TTTA
* * * * ** *** * * *
8172 GA-CAAGT-TTG-GAAGTTTGTCCAAG-ATCCAA-GAGAGAACCAATT-CTC-ACGTAA---ATA
109 GACCAAATGATGTG-A-TTT-CCCGAGCATGGAATGTTCGAA-AAATTACTCGAAGGAATGGAT-
* * * * * * *
8227 AGT-TT---TA-ATTCAGCG-ACCAAAACTTGTTTACAAAAGGA--C--AAAACA
169 CGTCTTGAATACTTTAAG-GAACC-GAA---G-TTATAAAAGAACTCGTAAAA-G
* * * * * * *
8272 TTTAGACCAAATT-GTG-CGATT--TCC-CG-AGCATAGA-ATGTTCAAAAAATTGCTCAAAG-G
1 TTT-GA-CAAGTTCG-GAAG-TTCGTCCAAGAACCA-AGAGA-G---AAACAATT-CTC-ACGTA
* * * *** * * * * *
8329 AAT-GGATCCTTCTGAATACTTGTGA--GAACCGAAGTTATAAAATAAATCGTA-AAA--GTTT-
55 AATAAG-T--TT-TTAATTC-AAAGACCAAAAC-ATGTT-T-ACA-AAAT-G-ACAAACTATTTA
* * * *** *** **
8387 G--GAAA-GTTCG-GATGTTCGTCCAAG-AACCAA-GAGAGAAACAATT-CTCACGTAAATAAGT
109 GACCAAATGAT-GTGAT-TTC--CCGAGCATGGAATGTTCGAAA-AATTACT--CG-AAGGAA--
* * ** * ** *** *
8445 TTTTGA-CAAGT-TTGGAATTTCGTCCAA-GAACTGAGAGAGA-AACAATTTTCACGTAAATAAT
164 --TGGATC--GTCTT-GAA-TAC-TTTAAGGAACCGA-AGTTATAA-AA-GAACTCGT-AA-AA-
*
8506 TT
216 -G
* * *
8508 TTTGATAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * ** * *
8573 AATT-AATAGTCCAAAACTTGTTTACAGAATGACAAACTATTTTGACCACTTGGTGTGATTT-CT
66 AATTCAA-AGACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCC
* * * * ** * * *
8636 GTAGCATGGAATGTTTGGAAATTTGCTTAAAGGAATGGACCGTCTCGAATACTTTAAGGAACCTA
130 G-AGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGA
* *
8701 AGTTATAAAATAACTCGTGAAAG
194 AGTTATAAAAGAACTCGTAAAAG
* * *
8724 TTTGACAAGTTCGAAAGTTTGTCCAATAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * *
8789 AATTCAAACACCAAAACTTGTTTACAAACTGACAAACTATTTAGACAAAATTATGTGATTTCCCG
66 AATTCAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCG
* * * * *
8854 AGCATGGAATGTTCGAAAAATTTCTAGAAAGGAATAGATCGTCTTGAATACTTTCAGGAACCAAA
131 AGCATGGAATGTTCGAAAAATTACTCG-AAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
*
8919 GTTATAAAAGAAAT--TACTAAAG
195 GTTATAAAAGAACTCGTA--AAAG
* ** * *
8941 TTTGACAAGTTCGGATGTTCGTCCAAGAGTCAAGAGAGAAATAATTCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * **
9006 AATTCAAAAACCAAAACATGTTTACGAAAGGACAAACTTTTTAGACCATAAT-AT-TCGATTTTA
66 AATTCAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAGACCA-AATGATGT-GATTTCC
* * * * * **
9069 CGAGCACGGAGTGTTCGAAAAATT-CTTGAAGGAATGGACCGTCTTGAATACTATAAGGTGCCGA
129 CGAGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGA
*
9133 AGTTATAACAGAACTCGTAAAAG
194 AGTTATAAAAGAACTCGTAAAAG
* * * * * *
9156 TTTGAAAAGTTCAGAACTTCATCCAAGAACCAAGAGGGAAACAATTCTCACGTAAATAACTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * * *
9221 AATTGAAAGACCAAATCTTGTTTACACAATGACAAATTATTCAGACCAAATGATGTGATTTCCCG
66 AATTCAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCG
* * * * * * *
9286 AGCATGGAATTCTTAGAAAAACTGCCCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCAAA
131 AGCATGGAA-TGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA
*
9351 GTTATAAAACAACTCGTAAAAG
195 GTTATAAAAGAACTCGTAAAAG
* * * * * * *
9373 TTT-AAAATGTTC-GAAATCTCGTCTAAGAACAAAGAGAAAAACAGTTCTCATGTAAATAAGTTT
1 TTTGACAA-GTTCGGAAGT-TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * * *
9436 TTAATTCAAAGACCAAAATAT-TTTTCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCT
64 TTAATTCAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCC
* * * *
9500 CGAGCAAGGAATGTTCGGAAAA-TAGCTCGAAGGAATGGATCGTCATGAATAGC-TTCAGGAACC
129 CGAGCATGGAATGTTCGAAAAATTA-CTCGAAGGAATGGATCGTCTTGAATA-CTTTAAGGAACC
*
9563 GAAGTTATAAAAGAAATCGTAAAAAG
192 GAAGTTATAAAAGAACTCGT-AAAAG
* *
9589 TTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAG
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAG
9625 TTACATAAAA
Statistics
Matches: 1888, Mismatches: 392, Indels: 326
0.72 0.15 0.13
Matches are distributed among these distances:
212 4 0.00
213 69 0.04
214 109 0.06
215 414 0.22
216 479 0.25
217 488 0.26
218 13 0.01
219 8 0.00
220 11 0.01
221 11 0.01
222 14 0.01
223 6 0.00
224 5 0.00
225 6 0.00
226 15 0.01
227 19 0.01
228 29 0.02
229 11 0.01
230 35 0.02
231 27 0.01
232 25 0.01
233 9 0.00
234 26 0.01
235 23 0.01
236 17 0.01
237 11 0.01
238 4 0.00
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (216 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTCAAAGACCAAAACATGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCG
AGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
TTATAAAAGAACTCGTAAAAG
Found at i:7867 original size:431 final size:429
Alignment explanation
Indices: 6966--8109 Score: 1295
Period size: 431 Copynumber: 2.6 Consensus size: 429
6956 TAAATAATTT
* * * * * *
6966 TTTGATAAGTTCGGGAGTTCGTCCAAGAACCAAGAGAGAAACAATTCACACGTAACTAAGTTATT
1 TTTGAAAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
** * * * * *
7031 AATT-AACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTGACCACATGGTGTGATTTCTC
66 AATTCAA-A-AACAAAACAT-TTTACAAAATGACAAACTATTTAGACCAAAT-GTGCGATTTCAC
* * * * * * ** * *
7095 TAGCATGGAA-TGTTTGGAAATTTGCTTAAAGGAATGAACCGTCTTGAATACTTTAAGGAACCTA
127 GAGCA-AGAAGTGTTCGAAAAATAGCTCGAAGGAATGGACCGTCTTGAATAC-TTAAGGAACCGA
* * *
7159 AGTTATAAAATAACTCGTGAAAGTTTGACAAGTTC-GAAAGTT-AGTCCAATAACCAAGAGAGAA
190 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCA-TCCAAGAACCAAGAGAGAA
* *
7222 ACAATTCTCACGTAAATAAGTTTTTAATTCAAACACCAAAACTTGTTTACAAATTGACAAACTAT
253 ACAATTCTCACGTAAATAAGTTTTTAATTCAAACACCAAAACCTGTTTACAAAATGACAAACTAT
* * * * *
7287 TTAGACAAAATTATGTGATTTCCCAAGCATGGAATGTTCGAAAAATTACTAGAAAGGAATAGATC
318 TCAGACAAAATGATGTGATTTCCCAAGCATGGAATCTTCGAAAAACTACCAGAAAGGAATAGATC
* *
7352 ATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTAAAAG
383 ATCTTGAATACTTTAAGGAACCAAAGTTATAAAACAAATCGTAAAAG
* * * * *
7399 TTTGACAAGTTCGGATGTTCGTCCAAGAGCCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 TTTGAAAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
7464 AATTCAAAAACCAAAACATGTTTACGAAA-GTACAAACTTTTTAGACGATAA-GATTCGATATT-
66 AATTCAAAAA-CAAAACAT-TTTACAAAATG-ACAAACTATTTAGACCA-AATG-TGCGAT-TTC
* * * **
7526 ACGAGCATGGAGTGTTCGAAAAAT-TCTCGAAGGAATGGACCGTCTTGAATACTGTAAGGTGCCG
125 ACGAGCAAGAAGTGTTCGAAAAATAGCTCGAAGGAATGGACCGTCTTGAATACT-TAAGGAACCG
*
7590 AAGTTATAAAAGAACTCGTAAAAGTTTGAAAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAA
189 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAA
* * * *
7655 CAATTCTCACGTAAATAACTTTTTAATT-AAAGACCAAATCCTGTTTACAAAATGACAAATTATT
254 CAATTCTCACGTAAATAAGTTTTTAATTCAAACACCAAAACCTGTTTACAAAATGACAAACTATT
* ** * *
7719 CAGACCAAATGATGTGATTTCCCGTGCATGGAAATCTTCGAAAAACTACCCG-AAGGAATGGATC
319 CAGACAAAATGATGTGATTTCCCAAGCATGG-AATCTTCGAAAAACTACCAGAAAGGAATAGATC
* * *
7783 GTCTTGAATACTTTAAGGAATCAAAGTTATAAAACAACTCGTAAAAG
383 ATCTTGAATACTTTAAGGAACCAAAGTTATAAAACAAATCGTAAAAG
* * *
7830 TTT-AAAATGTTCGGAAGCTT-GTCTAAGAACAAAGAGAGAAATAGTTCTCACGTAAATAAGTTT
1 TTTGAAAA-GTTCGGAAG-TTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * * *
7893 TTAATTCAAAGACAAAATATTTTTCAAAATGACAAACTATTTAGACCAAATGTGCGATTTCTCGA
64 TTAATTCAAAAACAAAACATTTTACAAAATGACAAACTATTTAGACCAAATGTGCGATTTCACGA
* * ** * *
7958 GCAAGAAGTGTTTGGAAAATAGCTCGAAGGAATGGATTGTCATGAATACCTTCAGGAACCGAAGT
129 GCAAGAAGTGTTCGAAAAATAGCTCGAAGGAATGGACCGTCTTGAATA-CTTAAGGAACCGAAGT
* * *
8023 TATAAAAGAAATCGTAAAATGTTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAA
193 TATAAAAGAACTCGTAAAA-GTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAA
* *
8088 TTCTTACATAAAATAAGTTTTT
257 TTCTCACGT-AAATAAGTTTTT
8110 GACAAGCTCG
Statistics
Matches: 600, Mismatches: 91, Indels: 42
0.82 0.12 0.06
Matches are distributed among these distances:
427 2 0.00
428 26 0.04
429 75 0.12
430 62 0.10
431 181 0.30
432 137 0.23
433 112 0.19
434 5 0.01
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (429 bp):
TTTGAAAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTCAAAAACAAAACATTTTACAAAATGACAAACTATTTAGACCAAATGTGCGATTTCACGAGC
AAGAAGTGTTCGAAAAATAGCTCGAAGGAATGGACCGTCTTGAATACTTAAGGAACCGAAGTTAT
AAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
CACGTAAATAAGTTTTTAATTCAAACACCAAAACCTGTTTACAAAATGACAAACTATTCAGACAA
AATGATGTGATTTCCCAAGCATGGAATCTTCGAAAAACTACCAGAAAGGAATAGATCATCTTGAA
TACTTTAAGGAACCAAAGTTATAAAACAAATCGTAAAAG
Found at i:8193 original size:62 final size:62
Alignment explanation
Indices: 8060--8232 Score: 213
Period size: 62 Copynumber: 2.8 Consensus size: 62
8050 AAGTTCAGAT
* *
8060 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACAT-AAAATAAGTTTTTGACAAGCTCGGTA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTC-T-CATGAAAATAAGTTTTGGACAAGCTCGGAA
* * * * *
8123 GTTCGTCCAAGAACTAAGAGAGAAGCAATACTCATGAAAATAAGTTTTGGACAAGTTTGGAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGAAAATAAGTTTTGGACAAGCTCGGAA
* * * * *
8185 GTTTGTCCAAGATCCAAGAGAGAACCAATTCTCACGTAAATAAGTTTT
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGAAAATAAGTTTT
8233 AATTCAGCGA
Statistics
Matches: 95, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
61 3 0.03
62 64 0.67
63 28 0.29
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (62 bp):
GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGAAAATAAGTTTTGGACAAGCTCGGAA
Found at i:8467 original size:62 final size:62
Alignment explanation
Indices: 8390--8569 Score: 279
Period size: 62 Copynumber: 2.9 Consensus size: 62
8380 AAAGTTTGGA
*
8390 AAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
1 AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
* * ** * * *
8452 AAGTTTGGAATTTCGTCCAAGAACTGAGAGAGAAACAATTTTCACGTAAATAATTTTTTGAT
1 AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
*
8514 AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
8570 ATTAATTAAT
Statistics
Matches: 103, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
62 103 1.00
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (62 bp):
AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
Found at i:8484 original size:339 final size:339
Alignment explanation
Indices: 7838--8788 Score: 1156
Period size: 340 Copynumber: 2.8 Consensus size: 339
7828 AGTTTAAAAT
* * * * *
7838 GTTCGGAAGCTTGTCTAAGAACAAAGAGAGAAATAGTTCTCACGTAAATAAGTTTTTAATTCAAA
1 GTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG-TTTTAATTCAAA
* *
7903 GA-CAAAA-TAT-TTTTCAAAATGACAAACTATTTAGACCAAA-TGTGCGATTTCTCGAGCA-AG
65 GACCAAAACT-TGTTTACAAAATGACAAACTATTTAGACCAAATTGTGCGATTTCCCGAGCATAG
* * * *
7963 AAGTGTTTGGAAAATAGCTCGAAGGAATGGAT--TGTCATGAATACCTTCAGGAACCGAAGTTAT
129 AA-TGTTTGGAAAATTGCTCAAAGGAATGGATCCT-TC-TGAATACTTTAAGGAACCGAAGTTAT
* *
8026 AAAAGAAATCGTAAAATGTTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTC
191 AAAATAAATCGTAAAA-GTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTC
* * * *
8091 TTACATAAAATAAGTTTTTGACAAGCTCGGTAGTTCGTCCAAGAACTAAGAGAGAAGCAATACTC
255 TCACGT-AAATAAGTTTTTGACAAGCTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATACTC
*
8156 ATGAAAATAAGTTTTGGACAA
319 ACGAAAATAAGTTTTGGACAA
* * * **
8177 GTTTGGAAGTTTGTCCAAGATCCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTAATTCAGCG
1 GTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTAATTCAAAG
*
8242 ACCAAAACTTGTTTACAAAAGGACAAAAC-ATTTAGACCAAATTGTGCGATTTCCCGAGCATAGA
66 ACCAAAACTTGTTTACAAAATGAC-AAACTATTTAGACCAAATTGTGCGATTTCCCGAGCATAGA
*** *
8306 ATGTTCAAAAAATTGCTCAAAGGAATGGATCCTTCTGAATACTTGTGA-GAACCGAAGTTATAAA
130 ATGTTTGGAAAATTGCTCAAAGGAATGGATCCTTCTGAATACTT-TAAGGAACCGAAGTTATAAA
8370 ATAAATCGTAAAAGTTTGGA-AAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
194 ATAAATCGTAAAAGTTT-GACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * * ** *
8434 CGTAAATAAGTTTTTGACAAGTTTGGAATTTCGTCCAAGAACTGAGAGAGAAACAATTTTCACGT
258 CGTAAATAAGTTTTTGACAAGCTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGA
* * *
8499 AAATAATTTTTTGATAA
323 AAATAAGTTTTGGACAA
* *
8516 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATT-AAT
1 GTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT-TTAATTCAA-
* * * * * *
8580 AGTCCAAAACTTGTTTACAGAATGACAAACTATTTTGACC-ACTTGGTGTGATTT-CTGTAGCAT
64 AGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATT-GTGCGATTTCCCG-AGCAT
* * * * *
8643 GGAATGTTTGGAAATTTGCTTAAAGGAATGGA-CCGTCTCGAATACTTTAAGGAACCTAAGTTAT
127 AGAATGTTTGGAAAATTGCTCAAAGGAATGGATCCTTCT-GAATACTTTAAGGAACCGAAGTTAT
* * * * * *
8707 AAAATAACTCGTGAAAGTTTGACAAGTTCGAAAGTTTGTCCAATAACCAAGAGAGAAACAATTCT
191 AAAATAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
8772 CACGTAAATAAGTTTTT
256 CACGTAAATAAGTTTTT
8789 AATTCAAACA
Statistics
Matches: 528, Mismatches: 66, Indels: 35
0.84 0.10 0.06
Matches are distributed among these distances:
338 12 0.02
339 184 0.35
340 240 0.45
341 83 0.16
342 8 0.02
343 1 0.00
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (339 bp):
GTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTAATTCAAAG
ACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATTGTGCGATTTCCCGAGCATAGAA
TGTTTGGAAAATTGCTCAAAGGAATGGATCCTTCTGAATACTTTAAGGAACCGAAGTTATAAAAT
AAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
AAATAAGTTTTTGACAAGCTCGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGAAAA
TAAGTTTTGGACAA
Found at i:9708 original size:62 final size:62
Alignment explanation
Indices: 9632--9767 Score: 173
Period size: 62 Copynumber: 2.2 Consensus size: 62
9622 GAGTTACATA
* * * * *
9632 AAATAAGTTTTTGACAAGCTCGGAAGTTTGTCCAAGAACTAAGAGAGAAGCTATACTCACGT
1 AAATAAGTTTTTGACAAGCTCAGAAGTTCGTCCAAGAACCAAGAGAGAACCAATACTCACGT
* * ** * *
9694 AAATAAGTTTTTGACAAGTTCAGAAGTTCGTTCAAGTTCCAAGAGAGATCCAATTCTCACGT
1 AAATAAGTTTTTGACAAGCTCAGAAGTTCGTCCAAGAACCAAGAGAGAACCAATACTCACGT
9756 AAATAAGTTTTT
1 AAATAAGTTTTT
9768 AATTCAGCGA
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.30
Consensus pattern (62 bp):
AAATAAGTTTTTGACAAGCTCAGAAGTTCGTCCAAGAACCAAGAGAGAACCAATACTCACGT
Found at i:10079 original size:340 final size:330
Alignment explanation
Indices: 9397--10249 Score: 948
Period size: 340 Copynumber: 2.5 Consensus size: 330
9387 AATCTCGTCT
* * * * * *
9397 AAGAACAAAGAGAAAAACAGTTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAA-TAT-TTT
1 AAGAACCAAGAGAGAATCAATTCTCACGTAAATAAGTTTTTAATTCAACGACCAAAACT-TGTTT
* * * *
9460 TCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCAAGGAATGTTCGGAAAATAG
65 ACAAAATGACAAACTATTTAGACCAAATG-TGTGATTTCTCGAGCATGGAATGTTCGGAAAATTG
* ** * *
9525 CTCGAAGGAATGGATCGTCATGAATAGCTTCAGGAACCGAAGTTATAAAAGAAATCGTAAAAAGT
129 CTCAAAGGAATGGATCGTCATGAATAATTTAAGGAACCGAAGTTATAAAAGAAATAGTAAAAAGT
* * * * *
9590 TTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGTTACATAAAATAAGTTTTTGACAAGCTCGG
194 TCGAAAAGGTCAGATGTTCATCCAAGAACCAAGAGTAACATAAAATAAGTTTTTGACAAGCTCGG
* * *
9655 AAGTTTGTCCAAGAACTAAGAGAGAAGCTATACTCACGTAAATAAGTTTTTGACAAGTTCAGAAG
259 AAGTTTGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTTGACAAGTTCAGAAG
* *
9720 TTCGTTC
324 TTCATCC
** *
9727 AAGTTCCAAGAGAG-ATCCAATTCTCACGTAAATAAGTTTTTAATTCAGCGACCAAAACTTGTTT
1 AAGAACCAAGAGAGAAT-CAATTCTCACGTAAATAAGTTTTTAATTCAACGACCAAAACTTGTTT
* * * **
9791 ACAAAAAGACAAACTATTTAGACCAAAT-TGTAATTTTTCCCGAGCATGGAATGTTCAAAAAATT
65 ACAAAATGACAAACTATTTAGACCAAATGTGTGA--TTTCTCGAGCATGGAATGTTCGGAAAATT
* * *
9855 GCTCAAAGGAATGGATCCTCCTGAATAATTTTAGGAACCGAAGTTATAAAAGAAATAGT-AAAAG
128 GCTCAAAGGAATGGATCGTCATGAATAATTTAAGGAACCGAAGTTATAAAAGAAATAGTAAAAAG
*
9919 TTCGAAAAGGTCGGATGTTCATCCAAGAACCAAGAGTGAAACAATTCTCACATAAATAAGTTTTT
193 TTCGAAAAGGTCAGATGTTCATCCAAGAACCAAGAGT--AAC-A---T---A-AAATAAGTTTTT
* * *
9984 GACAAGTTTGGAA-TTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGA
248 GACAAGCTCGGAAGTTT-GTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTTGA
* *
10048 TAAGTTCCGAAGTTCATCC
312 CAAGTTCAGAAGTTCATCC
* * * ** *
10067 AAGAAGCAAGAGAGAATCAATTCTCACGTAACTGAGTTACTAATT-AACAGTCCAAAACTTGTTT
1 AAGAACCAAGAGAGAATCAATTCTCACGTAAATAAGTTTTTAATTCAAC-GACCAAAACTTGTTT
* * * * * *
10131 ACAAAATGAAAAACTATTTTGACCAGATGGTGTGATTTCTCGATCATGGAAATGTTTGGAAATTT
65 ACAAAATGACAAACTATTTAGACCAAAT-GTGTGATTTCTCGAGCATGG-AATGTTCGGAAAATT
* * * *
10196 GCTCAAAGGAATGGATTGTCTTGAATACTTTAAGGAACCTAAG-TATTAAAAGAA
128 GCTCAAAGGAATGGATCGTCATGAATAATTTAAGGAACCGAAGTTA-TAAAAGAA
10250 CTCGTGAAAG
Statistics
Matches: 434, Mismatches: 67, Indels: 33
0.81 0.13 0.06
Matches are distributed among these distances:
329 4 0.01
330 84 0.19
331 106 0.24
332 2 0.00
333 1 0.00
336 1 0.00
339 6 0.01
340 168 0.39
341 58 0.13
342 4 0.01
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.28
Consensus pattern (330 bp):
AAGAACCAAGAGAGAATCAATTCTCACGTAAATAAGTTTTTAATTCAACGACCAAAACTTGTTTA
CAAAATGACAAACTATTTAGACCAAATGTGTGATTTCTCGAGCATGGAATGTTCGGAAAATTGCT
CAAAGGAATGGATCGTCATGAATAATTTAAGGAACCGAAGTTATAAAAGAAATAGTAAAAAGTTC
GAAAAGGTCAGATGTTCATCCAAGAACCAAGAGTAACATAAAATAAGTTTTTGACAAGCTCGGAA
GTTTGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTTGACAAGTTCAGAAGTT
CATCC
Found at i:10094 original size:62 final size:62
Alignment explanation
Indices: 9935--10097 Score: 245
Period size: 62 Copynumber: 2.6 Consensus size: 62
9925 AAGGTCGGAT
* * **
9935 GTTCATCCAAGAACCAAGAGTGAAACAATTCTCACATAAATAAGTTTTTGACAAGTTTGGAA
1 GTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCCGAA
* * *
9997 TTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGATAAGTTCCGAA
1 GTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCCGAA
* *
10059 GTTCATCCAAGAAGCAAGAGAGAATCAATTCTCACGTAA
1 GTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAA
10098 CTGAGTTACT
Statistics
Matches: 90, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 90 1.00
ACGTcount: A:0.40, C:0.18, G:0.17, T:0.26
Consensus pattern (62 bp):
GTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCCGAA
Found at i:10531 original size:216 final size:214
Alignment explanation
Indices: 10044--10650 Score: 591
Period size: 216 Copynumber: 2.8 Consensus size: 214
10034 AAATAAGTTT
* * * * * * **
10044 TTGATAAGTTCCGAAGTTCATCCAAGAAGCAAGAGAGAATCAATTCTCACGTAACTGAGTTACTA
1 TTGAAAAGTTCAGATGTTCATCCAAG-AGCAAGAGAGAAACAGTTCTCACGTAAATGAGTTTTTA
* * * * * *
10109 ATT--AACAGTCCAAAACTTGTTTACAAAATGAAAAACTATTTTGACCAGATGGTGTGATTTCTC
65 ATTCAAACA--CCAAAACTTGTTTAC-AAATGACAAACTATTTAGACCAAATGATGCGATTTCAC
* * * * * * *
10172 GATCATGGAAATGTTTGGAAATTTGCTCAAAGGAATGGATTGTCTTGAATACTTTAAGGAACCTA
127 GAGCATGG-AATGTTTGAAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTAAGGAACCGA
* ** *
10237 AGTATTAAAAGAACTCGTGAAAGT
191 AGTATTAAAAGAAATCGCAAAAGC
* * * * * * *
10261 TTGACAAGTTCAAAAT-TTCGTCCAAGAATCGAGAGCGAAA-TGATTCTCACGTAAATGAGTTTT
1 TTGAAAAGTTC-AGATGTTCATCCAAG-AGCAAGAGAGAAACAG-TTCTCACGTAAATGAGTTTT
* *
10324 TAATTCAAACACCAAAACTTGTTTACAAACTGACAAACTATTTAGACCAAATTATGCGATTTCCC
63 TAATTCAAACACCAAAACTTGTTTACAAA-TGACAAACTATTTAGACCAAATGATGCGATTTCAC
* * *
10389 GAGCATGGAATGTTCGAAAAATTGATCGAAGGAATAGATCGTCTTGAATACTTTCAGGAACCGAA
127 GAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTAAGGAACCGAA
*
10454 GT-TATAAAAGAAATTGCAAAAGC
192 GTAT-TAAAAGAAATCGCAAAAGC
* * * *
10477 TTGAAAAGTTCGGATGTTCACCCAAGAGCCAAGAGAGAAACAGTTCTTACGTAAATAAGTTTTTA
1 TTGAAAAGTTCAGATGTTCATCCAAGAG-CAAGAGAGAAACAGTTCTCACGTAAATGAGTTTTTA
* * * *
10542 ATTCGAAA-ACCAAAACATGTTTACGAAATGACAAACTTTTTAGACCATAA-GATTCGATTTTAC
65 ATTC-AAACACCAAAACTTGTTTAC-AAATGACAAACTATTTAGACCA-AATGATGCGATTTCAC
* * *
10605 GAGCATCGAGTGTTTGAAAAATT-CTCGAAGGAATAGATCGTTTTGA
127 GAGCATGGAATGTTTGAAAAATTGCTCGAAGGAATAGATCGTCTTGA
10651 GTACAGTTAT
Statistics
Matches: 320, Mismatches: 58, Indels: 26
0.79 0.14 0.06
Matches are distributed among these distances:
215 25 0.08
216 180 0.56
217 110 0.34
218 1 0.00
219 4 0.01
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (214 bp):
TTGAAAAGTTCAGATGTTCATCCAAGAGCAAGAGAGAAACAGTTCTCACGTAAATGAGTTTTTAA
TTCAAACACCAAAACTTGTTTACAAATGACAAACTATTTAGACCAAATGATGCGATTTCACGAGC
ATGGAATGTTTGAAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTAAGGAACCGAAGTAT
TAAAAGAAATCGCAAAAGC
Found at i:11134 original size:217 final size:218
Alignment explanation
Indices: 10755--11158 Score: 528
Period size: 217 Copynumber: 1.9 Consensus size: 218
10745 TTACAAATTA
* * **
10755 ACAAACTATTCAGACCAAATGATGCGATTTCCCGAGCATGGAAATCTTCGAGAAACTGCTCGAAG
1 ACAAACTATTCAGACCAAATGATGCGATTTCCCGAGCAAGGAAATCTTCGAAAAAAAGCTCGAAG
* * * * *
10820 GAATGGATCGCCTTGAATACTTTAAGGAATCGAAGTTATAAAACAACTATTAAAAGTTTAAAATG
66 GAATGGATCACCATGAATACCTTAAGGAATCGAAGTTATAAAACAAATAGTAAAAGTTTAAAATG
* * * * *
10885 TTCGAAAGTTCATCTAAGAACAAAGGGAGAAACATTTCTCACGT-AAATAAGTTTTTAATTCAAT
131 ATCGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACATAAAATAAGTTTTTAATTCAAT
10949 GACCAAAATAATTTTCAAAAATG
196 GACCAAAATAATTTTCAAAAATG
* *
10972 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAAGG-AATGTTCGAAAAAAAGCTCGAAG
1 ACAAACTATTCAGACCAAATGATGCGATTTCCCGAGCAAGGAAATCTTCGAAAAAAAGCTCGAAG
* * * * *
11036 GAATGGATCATCATGAATACCTTCAGGAATCGAAGTTATAAAATAAATCGTAAAATGTTTGACAA
66 GAATGGATCACCATGAATACCTTAAGGAATCGAAGTTATAAAACAAATAGTAAAA-GTTT-AAAA
* * * *
11101 -GATC-AGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAAATAAGTTTTT
129 TGATCGA-AAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACATAAAATAAGTTTTT
11159 GACAAGTTTG
Statistics
Matches: 158, Mismatches: 25, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
216 66 0.42
217 77 0.49
218 15 0.09
ACGTcount: A:0.41, C:0.16, G:0.17, T:0.26
Consensus pattern (218 bp):
ACAAACTATTCAGACCAAATGATGCGATTTCCCGAGCAAGGAAATCTTCGAAAAAAAGCTCGAAG
GAATGGATCACCATGAATACCTTAAGGAATCGAAGTTATAAAACAAATAGTAAAAGTTTAAAATG
ATCGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACATAAAATAAGTTTTTAATTCAAT
GACCAAAATAATTTTCAAAAATG
Found at i:11236 original size:62 final size:62
Alignment explanation
Indices: 11109--11282 Score: 258
Period size: 62 Copynumber: 2.8 Consensus size: 62
11099 AAGATCAGAT
* * * * *
11109 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAAATAAGTTTTTGACAAGTTTGGAA
1 GTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGT-AAATAAGTTTTTGACAAGTTCGAAA
* * *
11172 GTTCGTCCAAGAACTATGAGAGAAGCAATACTCACGTAAATAAGTTTTTGACAAGTTCGAAA
1 GTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGAAA
*
11234 GTTCGTCCAAGAACTAAGAGAGAACCAATTCTCACGTAAATAAGTTTTT
1 GTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
11283 AATTCAGCGA
Statistics
Matches: 100, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
62 69 0.69
63 31 0.31
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (62 bp):
GTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGAAA
Found at i:11513 original size:339 final size:338
Alignment explanation
Indices: 10884--12176 Score: 1526
Period size: 340 Copynumber: 3.8 Consensus size: 338
10874 AGTTTAAAAT
* * * * * *
10884 GTTCGAAAGTTCATCTAAGAACAAAGGGAGAAACATTTCTCACGTAAATAAGTTTTTAATTCAAT
1 GTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAC
** * *
10949 GACCAAAA-TAATTTTCAAAAATGACAAACTA-TTTAGACCAAATGATGCGATTTCCCGAGCAAG
66 GACCAAAACTTGTTTACAAAAA-GACAAACTATTTTA-ACCAAATGATGCGATTTCCCGAGCATG
* * * * * *
11012 GAATGTTCGAAAAA-AAGCTCGAAGGAATGGATCATCATGAATACCTTCAGGAATCGAAGTTATA
129 GAATGTTC-AAAAATTA-CTCAAAGGAATGGATCCTCTTGAATACTTTCAGGAACCGAAGTTATA
*
11076 AAATAAATCGTAAAATGTTTGACAAGATCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
192 AAATAAATCGTAAAA-GTTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
*
11141 TACATAAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACTATGAGAGAAGCAATACTCA
256 CACAT-AAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACTA-GAGAGAAGCAATACTCA
11206 CGTAAATAAGTTTTTGACAA
319 CGTAAATAAGTTTTTGACAA
* * *
11226 GTTCGAAAGTTCGTCCAAGAACTAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCAGC
1 GTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAC
* *
11291 GACCAAAACTTGTTTACAAAAAGACAAACTA-TTT-ACCAAATTATGCGATTTCCAGAGCATGGA
66 GACCAAAACTTGTTTACAAAAAGACAAACTATTTTAACCAAATGATGCGATTTCCCGAGCATGGA
* * * * * *
11354 ATGGTCAAACAATTACTCAAAGGAATGGATCCTCTTCAATACTTTCGGGAATCGAACTTATGAAA
131 ATGTTCAAA-AATTACTCAAAGGAATGGATCCTCTTGAATACTTTCAGGAACCGAAGTTATAAAA
* * * * *
11419 TAAATCATAAAAGTTTGACAAGTTCAGATGTTCGTCCAAGAACAAAGAGAGAAACTACTCTTACA
195 TAAATCGTAAAAGTTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACA
* * * *
11484 TAAAATAAGTTTTTGACAAGCTCGGAAGTTCATCCAAGAACTAAGAGAGAAGCAATACTCACGGA
260 T-AAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACT-AGAGAGAAGCAATACTCACGTA
11549 AATAAGTTTTTGACAA
323 AATAAGTTTTTGACAA
* * * ** *
11565 GTTTGGAAGTTCGTCCAAGATCCAAGAGAGATCCAATTTCTCACGTAAATAAGTTTTTAATTCAG
1 GTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAA-TTCTCACGTAAATAAGTTTTTAATTCAA
* * * * *
11630 CGACCAAAACTTGTTTACAAAAGGACAAAATATTTTGACCAAATTATGCTATTTCCCGAGCATGG
65 CGACCAAAACTTGTTTACAAAAAGACAAACTATTTTAACCAAATGATGCGATTTCCCGAGCATGG
* * ** *
11695 AATGTTCAAAAAATTACACAAAGGAATGTATCCTCCAGAATACTTAC-GAGAACCGAAGTTATAA
130 AATGTTC-AAAAATTACTCAAAGGAATGGATCCTCTTGAATACTTTCAG-GAACCGAAGTTATAA
* * * *
11759 AAGAAATCGTAAAAGTTTGAAAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTATCA
193 AATAAATCGTAAAAGTTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * * ** *
11824 CGTAAATAAGTTTTTGACAAGTTTGGAATTTCGTCCAAGAACCGAGAGAGAAACAATTTTCACAT
258 CATAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAA-CTAGAGAGAAGCAATACTCACGT
* *
11889 AATTAAGTTTTTGATAA
322 AAATAAGTTTTTGACAA
* * * * * *
11906 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCATGTAACTAAGTTATTAAGT-AAC
1 GTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAC
* * * * * * * *
11970 AGTCCAAAACTTGTTTAGAAAATGACAAACTATTTTAACCACATGGTGTGATTTCTCTAGCATGG
66 -GACCAAAACTTGTTTACAAAAAGACAAACTATTTTAACCAAATGATGCGATTTCCCGAGCATGG
** * * * *
12035 AATGTTTGGAAATTTGCTCAAAGGAATGGA-CCGACTTGAATACTTT-AGGAACCTAAGTTATAA
130 AATG-TTCAAAAATTACTCAAAGGAATGGATCC-TCTTGAATACTTTCAGGAACCGAAGTTATAA
* * * *
12098 AATAACTCGTGAAAGTTTGACAAGTTC-GAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTC
193 AATAAATCGTAAAAGTTTGACAAGTTCAG-ATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
*
12162 ACGTAAATAAGTTTT
257 ACATAAATAAGTTTT
12177 AAATTCAAAC
Statistics
Matches: 822, Mismatches: 114, Indels: 33
0.85 0.12 0.03
Matches are distributed among these distances:
338 1 0.00
339 246 0.30
340 249 0.30
341 103 0.13
342 210 0.26
343 13 0.02
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (338 bp):
GTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAC
GACCAAAACTTGTTTACAAAAAGACAAACTATTTTAACCAAATGATGCGATTTCCCGAGCATGGA
ATGTTCAAAAATTACTCAAAGGAATGGATCCTCTTGAATACTTTCAGGAACCGAAGTTATAAAAT
AAATCGTAAAAGTTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACAT
AAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACTAGAGAGAAGCAATACTCACGTAAAT
AAGTTTTTGACAA
Found at i:11520 original size:63 final size:61
Alignment explanation
Indices: 11432--11622 Score: 195
Period size: 63 Copynumber: 3.0 Consensus size: 61
11422 ATCATAAAAG
* * * *
11432 TTTGACAAGTTCAGATGTTCGTCCAAGAACAAAGAGAGAA-ACTACTCTTACATAAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAACAATACTC--AC-GAAAATAAGTT
* * * *
11495 TTTGACAAGCTCGGAAGTTCATCCAAGAACTAAGAGAGAAGCAATACTCACGGAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAA-CAATACTCACGAAAATAAGTT
* * * * * *
11557 TTTGACAAGTTTGGAAGTTCGTCCAAGATCCAAGAGAGATCCAATTTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGA-ACAA-TACTCACGAAAATAAGTT
11620 TTT
1 TTT
11623 AATTCAGCGA
Statistics
Matches: 108, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
62 46 0.43
63 56 0.52
65 6 0.06
ACGTcount: A:0.38, C:0.17, G:0.18, T:0.27
Consensus pattern (61 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAACAATACTCACGAAAATAAGTT
Found at i:11573 original size:62 final size:63
Alignment explanation
Indices: 11486--11622 Score: 186
Period size: 62 Copynumber: 2.2 Consensus size: 63
11476 CTCTTACATA
* *
11486 AAATAAGTTTTTGACAAGCTCGGAAGTTCATCCAAGAACTAAGAGAGAAGCAA-TACTCACGG
1 AAATAAGTTTTTGACAAGCTCGGAAGTTCATCCAAGAACCAAGAGAGAACCAATTACTCACGG
* * * * * * *
11548 AAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGATCCAAGAGAGATCCAATTTCTCACGT
1 AAATAAGTTTTTGACAAGCTCGGAAGTTCATCCAAGAACCAAGAGAGAACCAATTACTCACGG
11611 AAATAAGTTTTT
1 AAATAAGTTTTT
11623 AATTCAGCGA
Statistics
Matches: 65, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
62 46 0.71
63 19 0.29
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.28
Consensus pattern (63 bp):
AAATAAGTTTTTGACAAGCTCGGAAGTTCATCCAAGAACCAAGAGAGAACCAATTACTCACGG
Found at i:11857 original size:62 final size:62
Alignment explanation
Indices: 11774--11959 Score: 248
Period size: 62 Copynumber: 3.0 Consensus size: 62
11764 ATCGTAAAAG
11774 TTTGAAAAGTTCGG-ATGTTCGTCCAAGAACCAAGAGAGAAACAATTATCACGTAAATAAGTT
1 TTTGAAAAGTTCGGAAT-TTCGTCCAAGAACCAAGAGAGAAACAATTATCACGTAAATAAGTT
* * * * * *
11836 TTTGACAAGTTTGGAATTTCGTCCAAGAACCGAGAGAGAAACAATTTTCACATAATTAAGTT
1 TTTGAAAAGTTCGGAATTTCGTCCAAGAACCAAGAGAGAAACAATTATCACGTAAATAAGTT
* * * * * *
11898 TTTGATAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCATGTAACTAAGTT
1 TTTGAAAAGTTCGGAATTTCGTCCAAGAACCAAGAGAGAAACAATTATCACGTAAATAAGTT
11960 ATTAAGTAAC
Statistics
Matches: 108, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
62 106 0.98
63 2 0.02
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (62 bp):
TTTGAAAAGTTCGGAATTTCGTCCAAGAACCAAGAGAGAAACAATTATCACGTAAATAAGTT
Found at i:12409 original size:216 final size:216
Alignment explanation
Indices: 11898--19214 Score: 2106
Period size: 216 Copynumber: 33.3 Consensus size: 216
11888 TAATTAAGTT
* * * * *
11898 TTTGATAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCATGTAACTAAGTTATT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
11963 AAGT-AACAGTCCAAAACTTGTTTA-GAAAATGACAAACTATTTTA-ACCACATGGTGTGATTTC
66 AATTCAA-AGACCAAAACTTGTTTATG-AAATGACAAACTA-TTTAGACCAAATGATGTGATTTC
* * * *
12025 TCT-AGCATGGAATGTTTGGAAATTTGCTCAAAGGAATGGACCGACTTGAATACTTT-AGGAACC
128 -CTGAGCATGGAATGTTTGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACC
* * *
12088 TAAGTTATAAAATAACTCGTGAAAG
192 AAAGTTATAAAAGAACTCGTAAAAG
* * *
12113 TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTA
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * ** *
12178 AATTCAAACACCAAAACTTGTTTATGAACTGACAAACTATTCAGAAAAAATTATGTGATTTCCTG
66 AATTCAAAGACCAAAACTTGTTTATGAAATGACAAACTATTTAGACCAAATGATGTGATTTCCTG
* * * *
12243 AGCATGGAATGTTTGAAAAATTGCTCAAAGGAATAGATCGTCTTGAATACTTTTAGGAACCGATG
131 AGCATGGAATGTTTGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAG
* *
12308 TTATAAAAGAAATCGCAAAAG
196 TTATAAAAGAACTCGTAAAAG
* * * * * *
12329 TTTGACAAGCTCGGATGTTCGTCCAAGAGCCAAGAGAGAAACAATTCTTATGTAATTAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * * ** * * *
12394 AATTCAAAAACCAAAACATGTTTATGAAAGGACAAACTTTTTTGACCCTACGATGCGATTTTAC-
66 AATTCAAAGACCAAAACTTGTTTATGAAATGACAAACTATTTAGACCAAATGATGTGA-TTTCCT
* * * * **
12458 GAGCAT-TAACTGTTCGAAAAATT-CT-AGAAGGAATGGACCGTCTTGAATACTGTAAGGTGCCA
130 GAGCATGGAA-TGTTTGAAAAATTGCTCA-AAGGAATGGATCGTCTTGAATACTTTAAGGAACCA
12520 AAGTTATAAAAGAACTCGTAAAA-
193 AAGTTATAAAAGAACTCGTAAAAG
* * * *
12543 ATTGAAAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * ** * * * *
12608 AATTGAAAGACCAAATCCTGTTTACAAAATGAAAAACTATTCAGACCAAATGATGCGATTTCCCG
66 AATTCAAAGACCAAAACTTGTTTATGAAATGACAAACTATTTAGACCAAATGATGTGATTTCCTG
* * * * * * *
12673 AGCATGGAAATCTTCGAAAAACTGCCCGAAGGAATGGATCGCCTTGAATACTTTAAGGAATCAAA
131 AGCATGG-AATGTTTGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAA
* *
12738 GTTATAAAACAACTCGTAAATG
195 GTTATAAAAGAACTCGTAAAAG
* * * * *
12760 TTT-AAAATGTTCGGAAGTTCGTCTAAGAACAAAGAGAGAAACAGTTCTCACGTAAAAAAGTTTT
1 TTTGACAA-GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
*
12824 TAATTCAAAGACCAAAA-TAT-TTT-TCAAAATGACAAACTATTTAGACCAAATGATGTGATCTT
65 TAATTCAAAGACCAAAACT-TGTTTAT-GAAATGACAAACTATTTAGACCAAATGATGTGAT-TT
* * * * * * * * **
12886 --TAGAGCAAGTAATGTTTGGAAAATAGCTCGAAGGAATGGATCGTCATGAATACCTTCAGGATT
127 CCT-GAGCATGGAATGTTTGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
* *
12949 CGAAGTTATAAAAGAAATCGTAAAATG
191 CAAAGTTATAAAAGAACTCGTAAAA-G
* * * *
12976 TTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAACTCTTACGTAAAATAAGTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAATAAGTTTT
* * ** ** * * * * * * *
13041 TGA--C-AAG-CTATGAAGTTTGTCCAAGAACTAAGAGAGAAGCAATACTCATG--TAAAT-AAG
65 TAATTCAAAGACCA--AAACTTGTTTATGAA--ATGACA-AA-C--TATTTA-GACCAAATGATG
* * ** * *** **
13099 T--TTT--TGA-CAAGTTCGAAAGTTCGTCCAAGA-T-C-CAAGAGAGAACAAATTC-TCACGTA
121 TGATTTCCTGAGC-A--TGGAATGTT--TGAAAAATTGCTCAA-AG-GAATGGA-TCGTCTTG-A
* * *
13155 GATAAGTTTTTAATTCAGCG-ACCAAAACTGTTTACAAAAGGA--C--AAACTA-
177 -AT-A--CTTT-A---AG-GAACC-AAA--G-TTATAAAAGAACTCGTAAA--AG
* * * * *** ** *
13204 TTTAGACCAAATT-GTGCTATTTC--CCGAGCATGGAATGTTCA-AAA-AATTGCTCAAAG-AAA
1 TTT-GA-CAAGTTCG-G-AAGTTCGTCCAAG-AACCAA-G-AGAGAAACAATT-CTC-ACGTAAA
* * * * * * * ** * *
13263 T-GGATCCTACTGAATACTTTC-AGGAACC-GAAGTTATAAAAGAAATCGTA-AAA--GTTT-GA
57 TAAG-T--T--T--TTA-ATTCAAAG-ACCAAAACTTGTTTATGAAAT-G-ACAAACTATTTAGA
* * * ** *** *** **
13321 --AAA-GTTCG-GATGTTCGTCCAAAAACCAA-GAGAGAAACAATT-CTCACGTAAATAAGTTTT
111 CCAAATGAT-GTGAT-TTCCT-GAGCATGGAATGTTTGAAA-AATTGCTCA---AAGGAA----T
* * ** * ** *** * *
13380 TGA-CAAGT-TTGGAATTTCGTCCAA-GAACCGAGAGAGA-AACAATTTTCACATAATTAAG
165 GGATC--GTCTT-GAA-TAC-TTTAAGGAACC-AAAGTTATAA-AA-GAACTCGTAA--AAG
* * * * *
13438 TTTTTGATAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCATGTAACTAAGTTA
1 --TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * ** * *
13503 CTAAGT-AACA-ATCCAAAACTTGTTTACAAAATGACAAACTATTTTA-ACCACATGGTGTGATT
64 TTAATTCAA-AGA-CCAAAACTTGTTTATGAAATGACAAACTA-TTTAGACCAAATGATGTGATT
* * * *
13565 TCTCT-AGCATGGAATGTTTGGAAATTTGCTCAAAGGAATGGACCATCTTGAATACTTT-AGGAA
126 TC-CTGAGCATGGAATGTTTGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * *
13628 CCTAAGTTATAAAATAACTCGTGAAAG
190 CCAAAGTTATAAAAGAACTCGTAAAAG
* *
13655 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTA
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * *
13720 AATTCAAACACCAAAACTTGTTTACGAACTGACAAACTATTTAGACAAAATTATGTGATTTCCTG
66 AATTCAAAGACCAAAACTTGTTTATGAAATGACAAACTATTTAGACCAAATGATGTGATTTCCTG
* * * *
13785 AGCATGGAATGTTTGAAAAATTGCTCAAAGGAATAGATCATCTTGAATACTCGT-AGGAACCGAA
131 AGCATGGAATGTTTGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACT-TTAAGGAACCAAA
* *
13849 GTTATAAAAGAAATCGCAAAAG
195 GTTATAAAAGAACTCGTAAAAG
* * * * *
13871 TTTGACAAGTTTGGATGTTCGTCCAAGAGCCAAGAGAGAAACAATTCTTACGTAATTAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * * * ** * * *
13936 AATTCAAAAACCAAAACATGTTTACGAAAGGACAAACTCTTTTGACCCTACGATGCGATTTTAC-
66 AATTCAAAGACCAAAACTTGTTTATGAAATGACAAACTATTTAGACCAAATGATGTGA-TTTCCT
* * **
14000 GAGCAT-GAAGTGTTCGAAAAATT-CT-AGAAGGAATGGACCGTCTTGAATA-TTGTAAGGTGCC
130 GAGCATGGAA-TGTTTGAAAAATTGCTCA-AAGGAATGGATCGTCTTGAATACTT-TAAGGAACC
*
14061 GAAGTTATAAAAGAACTCGTAAAAG
192 AAAGTTATAAAAGAACTCGTAAAAG
* * * *
14086 -TTGAAAATTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * ** * * *
14150 AATTGAAAGACCAAATCCTGTTTACAAAATGACAAACTATTCAGACCAAATGATGCGATTTCCCG
66 AATTCAAAGACCAAAACTTGTTTATGAAATGACAAACTATTTAGACCAAATGATGTGATTTCCTG
* * * * * * * *
14215 AGCATGGAAATCTTCGAAAAACTGCCCGAAGGAATGGATCGCCTTGAATACTTTAAGGAATCGAA
131 AGCATGG-AATGTTTGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAA
*
14280 GTTATAAAACAACTCGTAAAAG
195 GTTATAAAAGAACTCGTAAAAG
* * * * * * *
14302 TTT-AAAATGTTCGGAAATTCATCTAAGAACGAAGAGAGAAATAGTTCTCACGTAAATAAGTTTT
1 TTTGACAA-GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* *
14366 TAATTCAAAGACCAAAA-TAT-TTT-TCAAAATGACAAACTATTTAGACCAAATGATGTGATTTT
65 TAATTCAAAGACCAAAACT-TGTTTAT-GAAATGACAAACTATTTAGACCAAATGATGTGATTTC
* * * * * * ***
14428 CAGAGCAAGGAATGTTTGGAAAATAGCTCGAAGGAATGGATCGTCCTGAATACCTTT-AGGATTT
128 CTGAGCATGGAATGTTTGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATA-CTTTAAGGAACC
* *
14492 GAAGTTATAAAAGAAATCGTAAAATG
192 AAAGTTATAAAAGAACTCGTAAAA-G
* * *
14518 TTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAAATAAGTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAATAAGTTTT
* * * ** * * * * **** * *
14583 TGA--C-AAG-CTCGAAAGTTCGTCCAAGAACTAAGAGAGAAGCAATACCCACGTAAAT-AAGT-
65 TAATTCAAAGAC-CAAAACTT-GTTTATGAA--ATGACA-AA-CTATTTAGAC-CAAATGATGTG
* * ** * *** **
14642 -TTT--TGA-CAAGTTCGAAAGTTCGTCCAAGA-T-C-CAAGAGAGAACCAATTC-TCACGTAGA
123 ATTTCCTGAGC-A--TGGAATGTT--TGAAAAATTGCTCAA-AG-GAATGGA-TCGTCTTG-A-A
* * *
14699 TAAGTTTTTAATTCAGCG-ACCAAAACTTGTTTACAAAAGGA--C--AAACTA-
178 T-A--CTTT-A---AG-GAACC-AAA---G-TTATAAAAGAACTCGTAAA--AG
* * * * * * ** * *
14747 TTTAGACCAAATT-GTGCTATTTCCCGAT-CATGGA--ATGTTCA-AAAC-ATTGCTCAAAG-GA
1 TTT-GA-CAAGTTCG-G-AAGTT--CG-TCCAAGAACCAAG-AGAGAAACAATT-CTC-ACGTAA
* * * * * * * ** * *
14805 AT-GGATCCTCCTGAATACTTTC-AGGAACC-GAAGTTATAAAAGAAATCGTA-AAA--GTTT-G
56 ATAAG-T--T--T--TTA-ATTCAAAG-ACCAAAACTTGTTTATGAAAT-G-ACAAACTATTTAG
* * * * * * * ** **
14863 ---AAAGGTTCG-GATGTTCAT--CCAAGAACCAAGAGTGAAACAATT-CTCACGTAAATAAGTT
110 ACCAAATGAT-GTGAT-TTCCTGAGCATGGA--ATGTTTGAAA-AATTGCTCA---AAGGAA---
* * * * *
14921 TTCGA-CAAGT-TTGGAAT--TTTGACCAAGAACGAAGAG--AGAAACA-ATTCTCACGTAAATA
164 -TGGATC--GTCTT-GAATACTTT-A--AGGAACCAA-AGTTATAAA-AGA-ACT--CGT-AA-A
14979 AG
215 AG
* * * * *
14981 TTTTTGATAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTGAGTTA
1 --TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* ** * * * *
15046 TTAATT-AACAGTCCAAAACTTGTTTACAAAATGAGAAACTATTTTGACCAGATGGTGTGATTT-
64 TTAATTCAA-AGACCAAAACTTGTTTATGAAATGACAAACTATTTAGACCAAATGATGTGATTTC
* *
15109 CTCGAGCATGGAAATGTTTGGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
128 CT-GAGCATGG-AATGTTTGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
* * *
15174 CTAAGTTAAAAAAGAACTCGTGAAAG
191 CAAAGTTATAAAAGAACTCGTAAAAG
* * * *
15200 TTTGACAAGTTCGTAAATTCGACCAAGAACCGAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * * * *
15265 AATTCAAACACCAAAACTTGTTTA-CAAACTGACAAACTTTTTAGACCAAGTTATGCGATTTCCC
66 AATTCAAAGACCAAAACTTGTTTATGAAA-TGACAAACTATTTAGACCAAATGATGTGATTTCCT
* ** * * *
15329 GAGCATGGAATGTTCGAAAAATTGCTTGAAGGAATAGATCATCTTGAATACTTTCAGGAACCAAA
130 GAGCATGGAATGTTTGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAA
* * *
15394 GTTATTAAAGAAATCGCAAAAG
195 GTTATAAAAGAACTCGTAAAAG
* * * * *
15416 TTTGACAAGTTCAGATGTTCGTCCAAGAGCCAAGAGAGAAACAGTTCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * * * * * *
15481 AATTCGAAA-ACCAAAACATGTTTACGAAAGGATAAACTTTTTAGACCATACGATGCGATTTTAC
66 AATTC-AAAGACCAAAACTTGTTTATGAAATGACAAACTATTTAGACCAAATGATGTGA-TTTCC
* * ** ** * * ** *
15545 -GAGCACGGAGTGTTCAAAAAATT-CTTGAATGAATGGATCGTCTTGAATACTGTAAGGCGCCGA
129 TGAGCATGGAATGTTTGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAA
*
15608 AGTTATAAAAGAACTCATAAAAG
194 AGTTATAAAAGAACTCGTAAAAG
* ** * * *
15631 TTTGAGAAGTTTAGAAGTTCATCCAACAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * *** * ** * * *
15696 AATTGAAAGAACATTTCCTGTTTACAAAATGACAAACTATTCAGACCAAATGATGCGATTTCCCG
66 AATTCAAAGACCAAAACTTGTTTATGAAATGACAAACTATTTAGACCAAATGATGTGATTTCCTG
* * * * * * * *
15761 AGCATGGAAATCTTCGAAAAACTGCCCGAAGGAATGGATCGCCTTGAATACTTTAAGAAATCAAA
131 AGCATGG-AATGTTTGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAA
*
15826 GTTATAAAACAACTCGTAAAAG
195 GTTATAAAAGAACTCGTAAAAG
* * * * *
15848 TTT-AAAATGTTCGGAAGTTCGTCTAAGAACAAAGAGAGAAACAGTTCTCATGTAAATAAGTTTT
1 TTTGACAA-GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* *
15912 TAATTCAAAGACCAAAA-TAT-TTT-TCAAAATGACAAACTATTTAGACCAAATGATGTGATTTT
65 TAATTCAAAGACCAAAACT-TGTTTAT-GAAATGACAAACTATTTAGACCAAATGATGTGATTTC
* * * * * * * * * ** *
15974 CAGAGCAAGTAATGTTTGGAAAATAGCTCGAAGGAATGGATCGTCATGAATACCTTCAGGATTCG
128 CTGAGCATGGAATGTTTGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA
*
16039 AAGTTATAAAAGAAATCGTAAAATG
193 AAGTTATAAAAGAACTCGTAAAA-G
* * * *
16064 TTTGACAAGTTCAGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTTACGTAAAATAAGTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAATAAGTTTT
* ** * ** * * * * * * * *
16129 TGA--C-AAG-CTCGGAAGTTCGTCCAAGAACTAAGAGAGAAGCGATACT-CACATAAAT-AAGT
65 TAATTCAAAGAC-CAAAACTT-GTTTATGAA--ATGACA-AA-CTAT-TTAGAC-CAAATGATGT
* ** * *** **
16188 --TTT--TGA-CAAGTTCGGAA-GCTCGTCCAAGA-T-C-CAAGAGAGAACCAATTC-TCACGAG
122 GATTTCCTGAGC-A--T-GGAATG-T-TTGAAAAATTGCTCAA-AG-GAATGGA-TCGTCTTGA-
* * *
16243 ATAAGTTTTTAAATCAGCG-ACCAAAACTTGTTTACAAAAGGA--C--AAACTA-
177 AT-A--CTTT--A--AG-GAACC-AAA---G-TTATAAAAGAACTCGTAAA--AG
* * * * * ** ** * * *
16292 TTTAGACCAA-ATCGTACGACTTC--CCGAGCATGAA-ATGTTCAAAAAATTGCTCAAAG-GAAT
1 TTT-GA-CAAGTTCGGA--AGTTCGTCCAAGAACCAAGA-G-AGAAACAATT-CTC-ACGTAAAT
* * * * * * * ** * *
16352 GGATACTCTTGAATACTTTC-AGGAACC-GAAGTTATAAAAGAAATCGTA-AAA--GTTT-G---
58 --A-AGT-TT--TTA-ATTCAAAG-ACCAAAACTTGTTTATGAAAT-G-ACAAACTATTTAGACC
* * ** * * **
16408 AAAGGTTCG-GATGTTCGTCCAAG-A-GCCAATAG--AGAAACAATT-CTCACGTAAATAACTTT
113 AAATGAT-GTGAT-TTC--CTGAGCATG-GAAT-GTTTGAAA-AATTGCTCA---AAGGAA----
* * * ** * * *
16467 TCGA-CAAGT-TTGGAAT--TTCGACCAAGAA-CAAAGAGAGAAAAAATTATCACGTAAATAAG
164 TGGATC--GTCTT-GAATACTT-TA--AGGAACCAAAGTTATAAAAGA--A-CTCGT-AA-AAG
* * * * *
16526 TTTTTGATAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCACGTAACTGAGTTA
1 --TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * ** * * * *
16591 TTAATT-AATAGTCGAAAACTTGTTTACAAAATGAGAAACTATTTTGACCAGATGGTGTGATTT-
64 TTAATTCAA-AGACCAAAACTTGTTTATGAAATGACAAACTATTTAGACCAAATGATGTGATTTC
* *
16654 CTCGAGCATGGAAATGTTTGGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
128 CT-GAGCATGG-AATGTTTGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
* *
16719 CTAAGTTATAAAAGAACTCGTGAAAG
191 CAAAGTTATAAAAGAACTCGTAAAAG
* *
16745 TTTGACAAGTTCGTAAGTTCGTCCAAGAACCGAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * * *
16810 AATTCAAACACCAAAACTTGTTTA-CAAACTGACAAACTATTTAGACCAAGTTATGCGATTTCCC
66 AATTCAAAGACCAAAACTTGTTTATGAAA-TGACAAACTATTTAGACCAAATGATGTGATTTCCT
* ** * * * *
16874 GAGCATGGAATGTTCGAAAAATTGCTCGTAGGAATAGATCATCTTGAATACTTTCAGGAACCGAA
130 GAGCATGGAATGTTTGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAA
* * *
16939 GTTATTAAAGAAATCGCAAAAG
195 GTTATAAAAGAACTCGTAAAAG
* * * * *
16961 TTTGACAAGTTCAGATGTTCGTCCAAGAGCCAAGAGAGAAACAGTTCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * * * * *
17026 AATTCGAAA-ACCAAAA-TATGTTTACGAAAGGATAAACTTTTTAGACCATACGATGCGATTTTA
66 AATTC-AAAGACCAAAACT-TGTTTATGAAATGACAAACTATTTAGACCAAATGATGTGA-TTTC
** * * * * ** *
17089 C-GAGCACAGAGTGTTCGAAAAATT-CTCGAAGGAATGGATCGTCTTGAATACTGTAAGGCGCCG
128 CTGAGCATGGAATGTTTGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA
*
17152 AAGTTATAAAATAACTCGTAAAAG
193 AAGTTATAAAAGAACTCGTAAAAG
* ** * * *
17176 TTTGAGAAGTTCAAAAGTTCATCCAAGAACCAAGACAGAAAGAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * ** * * * *
17241 AATTGAAAGACCAAATCCTGTTTACAAAATGACAAACTATTCAGACCAAATAATGCGATTTCCCG
66 AATTCAAAGACCAAAACTTGTTTATGAAATGACAAACTATTTAGACCAAATGATGTGATTTCCTG
* * * * * *
17306 AGCATGGAAATCTTCG-AAAATCTGCACGAAA-GAATGGATCGCCTTGAATACTTTAAGGAATCG
131 AGCATGG-AATGTTTGAAAAAT-TGCTC-AAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA
*
17369 AAGTTATAAAACAACTCGTAAAAG
193 AAGTTATAAAAGAACTCGTAAAAG
* * * *
17393 TTT-AAAATGTTCGGAAGTTCGTCTAAGAACAAAGAGAGAAACAGTTCTCACGTAAATAAGTTTT
1 TTTGACAA-GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * *
17457 TAATTCCAAGACCAAAA-TAT-TTT-TCAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
65 TAATTCAAAGACCAAAACT-TGTTTAT-GAAATGACAAACTATTTAGACCAAATGATGTGATTTC
* * * * * * * * * *
17519 CCGAGCATAGAATGTTCGAAAAATAGATCGAAGGAATGGATTGTCATGAATACCTTCAGGAA-CA
128 CTGAGCATGGAATGTTTGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA
*
17583 GAAGTTATAAAAGAAATCGTAAAAAG
193 -AAGTTATAAAAGAACTCGT-AAAAG
* * * * * * *
17609 TTTGACAAGTTCAGATGTTCGTCCAAGCACCAAGACAGAAACAATTCTTACATAAAATAAGTGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAATAAGTTTT
* * * ** * * * * * * * *
17674 TGA--C-AAG-CTCGAAAGTTCGTCCAAGAACCAAGAGAGAAGCAATACT-CACGTAAAT-AAG-
65 TAATTCAAAGAC-CAAAACTT-GTTTATGAA--ATGACA-AA-CTAT-TTAGAC-CAAATGATGT
* * * *** * **
17732 G-TTT--TGA-CAAGTTCGGAA-GTTTGTCCAAGA-T-CT-AAGACAGAACCAATTGTCACGTAG
122 GATTTCCTGAGC-A--T-GGAATGTTTG--AAAAATTGCTCAA-A-GGAATGGATCGTCTTG-A-
* * *
17789 ATAAGTTTTTAATTCAGCG-ACCAAAACTTATTTACAAAAGGA--C--AAACTA-
177 AT-A--CTTT-A---AG-GAACC-AAAGTTA--T--AAAAGAACTCGTAAA--AG
* * * * * ** ** * * *
17838 TTTAGACCAAATT-GTGCGATTTC--CCGAGCATGAA-ATGTTCAAAAAATTGCTCAAAG-GAAT
1 TTT-GA-CAAGTTCG-G-AAGTTCGTCCAAGAACCAAGA-G-AGAAACAATT-CTC-ACGTAAAT
* * * ** * * * * * ** * *
17898 -GGATCCTCCTGAATACTTTTAGGAACAGAAGTTATAAAAGAAATCGTA-AAA--GTTT-GA--A
58 AAG-T--T--T--TTAATTCAAAGACCAAAACTTGTTTATGAAAT-G-ACAAACTATTTAGACCA
* ** * * * *** **
17956 AA-GTTCG-GATGTT-C-GTCCAAGAACCAAGAGAGAAACAATT-CTCACGTAAATAAGTTTTTG
114 AATGAT-GTGAT-TTCCTGAGCATGGA--ATGTTTGAAA-AATTGCTCA---AAGGAA-----TG
* ** * * ** * * *
18016 AAAAGT-TCGGAATTTCGTCCAA-GAATCAAGAG--AGAAACA-ATTCTCACGTAAATAAG
166 GATCGTCT-TGAA-TAC-TTTAAGGAACCAA-AGTTATAAA-AGA-ACT--CGT-AA-AAG
* * * * *
18072 TTTTTGATAAGTTCGAAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTA
1 --TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * * * * *
18137 TTAATTAAAAGTCCACAACTTGTTTA-GAAAATGACAAACTATTTTGACCAGATGGTGTGATTT-
64 TTAATTCAAAGACCAAAACTTGTTTATG-AAATGACAAACTATTTAGACCAAATGATGTGATTTC
* * * * * * *
18200 CTCGAGCATGGGAATGTTTGGAAATTTGCTTAAGGGAATGGATCGTCTTAAAAACATTAAGGAAC
128 CT-GAGCAT-GGAATGTTTGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
* * *
18265 CTAAGTTATAAAAGAACTCATGAAAG
191 CAAAGTTATAAAAGAACTCGTAAAAG
* * * * *
18291 TTTGACTAGTTCGAAAGTTCGTCCAAGAATCGAGATG-GAAATAATTCTCACGTAAATAAGTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGA-GAGAAACAATTCTCACGTAAATAAGTTTT
* * * * * * *
18355 TAATTCAAACACCGAAACTTG----T----TGACAAACTATTAAGAACAAATTATGAGATTTCCC
65 TAATTCAAAGACCAAAACTTGTTTATGAAATGACAAACTATTTAGACCAAATGATGTGATTTCCT
* ** * * * * *
18412 GTGCATGGAATGTTCAAAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTCAGGAATCGAA
130 GAGCATGGAATGTTTGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAA
* * *
18477 GTTATGAAAGAAATCGCAAAAG
195 GTTATAAAAGAACTCGTAAAAG
* * * * * * *
18499 TTTGACAAGTTCAGATGTTCATCCAGGAGCCAAGAGCGAAACAGTTCGT-ACGTAAATAAGTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTC-TCACGTAAATAAGTTTT
* * * * * * *
18563 TAATTCGAATACCAAAACATGTTTATGAAATGACAAACT-TTTCAGACCATACGATGCGATTTTA
65 TAATTCAAAGACCAAAACTTGTTTATGAAATGACAAACTATTT-AGACCAAATGATGTGA-TTTC
** * * * * ** *
18627 C-GAGCACAGAGTGTTCGAAAAATT-CTCGAAGGAATGGATCGTCTTGAATACTGTAAGGCGCCG
128 CTGAGCATGGAATGTTTGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA
* *
18690 AAGTTATAAAAGAACTTGTAAAAA
193 AAGTTATAAAAGAACTCGTAAAAG
* * * * * *
18714 TTTAAGAAGTTCAGAAGTTCATTCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * ** * * *
18779 AATTGAAAGACCAAATCCTGTTTACAAAATGACAAACTATTCAGACCAAATGATGCGATTTCTTG
66 AATTCAAAGACCAAAACTTGTTTATGAAATGACAAACTATTTAGACCAAATGATGTGATTTCCTG
* * * * * * * * * *
18844 AGCATGGAAATCTTCGAAAAACTGCCCGAAGTAACGGATCGTCTTGAATACTTTCAGGAATCGAA
131 AGCATGG-AATGTTTGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAA
* *
18909 GTTATAAAACAACTCGTAAAAA
195 GTTATAAAAGAACTCGTAAAAG
* * * * *
18931 TTT-AAAATGTTCGGAAGTTCGTCTAAGAACAAAGAGAGAAACAGTTCTCACATAAATAAGTTTT
1 TTTGACAA-GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
*
18995 TAATTCAAAGACCAAAA-TAT-TTT-TCGAAATGACAAACTATTTAGACCAAATGATGCGATTT-
65 TAATTCAAAGACCAAAACT-TGTTTAT-GAAATGACAAACTATTTAGACCAAATGATGTGATTTC
* * * * * * * * *
19056 CTCGAGCAAGGAATATTCGACAAAATAGCTCGAAGGAATGGATCGTCATGAAAACCTTCAGGAAC
128 CT-GAGCATGGAATGTTTGA-AAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
* *
19121 CGAAGTTATAAAAGAAATCGTAAAATG
191 CAAAGTTATAAAAGAACTCGTAAAA-G
* * ** * * *
19148 TTTTGACAAGTTCAGATGTTCAACCAAGAATCAAGAGACAAACAATT-TCTACATAAAATAAGTT
1 -TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC-ACGT-AAATAAGTT
19212 TTT
63 TTT
19215 GACAAGCTCG
Statistics
Matches: 5202, Mismatches: 1286, Indels: 1224
0.67 0.17 0.16
Matches are distributed among these distances:
207 1 0.00
208 128 0.02
209 31 0.01
210 1 0.00
212 1 0.00
213 13 0.00
214 274 0.05
215 1160 0.22
216 1345 0.26
217 888 0.17
218 99 0.02
219 80 0.02
220 62 0.01
221 42 0.01
222 16 0.00
223 32 0.01
224 48 0.01
225 19 0.00
226 49 0.01
227 64 0.01
228 48 0.01
229 74 0.01
230 79 0.02
231 130 0.02
232 131 0.03
233 116 0.02
234 74 0.01
235 54 0.01
236 31 0.01
237 17 0.00
238 31 0.01
239 36 0.01
240 24 0.00
241 3 0.00
242 1 0.00
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (216 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTCAAAGACCAAAACTTGTTTATGAAATGACAAACTATTTAGACCAAATGATGTGATTTCCTG
AGCATGGAATGTTTGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAACTCGTAAAAG
Found at i:12860 original size:430 final size:429
Alignment explanation
Indices: 11898--13041 Score: 1149
Period size: 431 Copynumber: 2.6 Consensus size: 429
11888 TAATTAAGTT
* * * * * ** *
11898 TTTGATAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCATGTAACTAAGTTATT
1 TTTGAAAAGCTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTT
* ** * * * * * * *
11963 AAGT-AACAGTCCAAAACTTGTTTAGAAAATGACAAACTATTTTA-ACCACATGGTGTGAT-TTC
66 AATTCAA-AAACCAAAACATGTTTATAAAAGGACAAACTA-TTTAGACCAAACGATGCGATCTT-
** * * * * * * * * * *
12025 TCTAGCATGGAATGTTTGGAAATTTGCTCA-AAGGAATGGACCGACTTGAATACTTTAGGAACCT
128 TAGAGCAAGTAATGTTCGAAAAATAGCT-AGAAGGAATGGACCGTCTTGAATACTTAAGG-TCCA
* *
12089 AAGTTATAAAATAACTCGTGAAAGTTTGACAAGTTC-GAAAGTTCATCCAAGAACCAAGAGAGAA
191 AAGTTATAAAAGAACTCGT-AAAATTTGACAAGTTCAG-AAGTTCATCCAAGAACCAAGAGAGAA
* * ** * *
12153 ACAATTCTCACGTAAATAAGTTTTAAATTCAAACACCAAAACTTGTTTATGAACTGACAAACTAT
254 ACAATTCTCACGTAAATAAGTTTTTAATTCAAACACCAAAACCTGTTTACAAAATGAAAAACTAT
* * * * * * *
12218 TCAGAAAAAATTATGTGATTTCCTGAGCATGGAATGTTTGAAAAATTGCTCAAAGGAATAGATCG
319 TCAGAAAAAATGATGCGATTTCCCGAGCATGGAATCTTCGAAAAACTGCCCAAAGGAATAGATCG
* * * * *
12283 TCTTGAATACTTTTAGGAACCGATGTTATAAAAGAAATCGCAAAAG
384 CCTTGAATACTTTAAGGAACCAAAGTTATAAAACAAATCGCAAAAG
* * * * * * **
12329 TTTGACAAGCTCGGATGTTCGTCCAAGAGCCAAGAGAGAAACAATTCTTATGTAATTAAGTTTTT
1 TTTGAAAAGCTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTT
* * * **
12394 AATTCAAAAACCAAAACATGTTTATGAAAGGACAAACTTTTTTGACCCTACGATGCGAT-TTTAC
66 AATTCAAAAACCAAAACATGTTTATAAAAGGACAAACTATTTAGACCAAACGATGCGATCTTTA-
* *
12458 GAGC-ATTAACTGTTCGAAAAAT-TCTAGAAGGAATGGACCGTCTTGAATACTGTAAGGTGCCAA
130 GAGCAAGTAA-TGTTCGAAAAATAGCTAGAAGGAATGGACCGTCTTGAATACT-TAAGGT-CCAA
* *
12521 AGTTATAAAAGAACTCGTAAAAATTGAAAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACA
192 AGTTATAAAAGAACTCGTAAAATTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACA
* * *
12586 ATTCTCACGTAAATAAGTTTTTAATTGAAAGACCAAATCCTGTTTACAAAATGAAAAACTATTCA
257 ATTCTCACGTAAATAAGTTTTTAATTCAAACACCAAAACCTGTTTACAAAATGAAAAACTATTCA
** * *
12651 GACCAAATGATGCGATTTCCCGAGCATGGAAATCTTCGAAAAACTGCCCGAAGGAATGGATCGCC
322 GAAAAAATGATGCGATTTCCCGAGCATGG-AATCTTCGAAAAACTGCCCAAAGGAATAGATCGCC
* * * *
12716 TTGAATACTTTAAGGAATCAAAGTTATAAAACAACTCGTAAATG
386 TTGAATACTTTAAGGAACCAAAGTTATAAAACAAATCGCAAAAG
* * *
12760 TTT-AAAATGTTCGGAAGTTCGTCTAAGAACAAAGAGAGAAACAGTTCTCACGTAAAAAAGTTTT
1 TTTGAAAA-GCTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAAAAAGTTTT
* * * * *
12824 TAATTCAAAGACCAAAATAT-TTT-TCAAAATGACAAACTATTTAGACCAAATGATGTGATCTTT
65 TAATTCAAAAACCAAAACATGTTTAT-AAAAGGACAAACTATTTAGACCAAACGATGCGATCTTT
* * * * * * * *
12887 AGAGCAAGTAATGTTTGGAAAATAGCTCGAAGGAATGGATCGTCATGAATACCTTCAGGATTCGA
129 AGAGCAAGTAATGTTCGAAAAATAGCTAGAAGGAATGGACCGTCTTGAATA-CTTAAGG-TCCAA
* * *
12952 AGTTATAAAAGAAATCGTAAAATGTTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAA
192 AGTTATAAAAGAACTCGTAAAA--TTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAA
* *
13017 CAACTCTTACGTAAAATAAGTTTTT
255 CAATTCTCACGT-AAATAAGTTTTT
13042 GACAAGCTAT
Statistics
Matches: 588, Mismatches: 106, Indels: 35
0.81 0.15 0.05
Matches are distributed among these distances:
429 2 0.00
430 199 0.34
431 323 0.55
432 5 0.01
433 47 0.08
434 12 0.02
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (429 bp):
TTTGAAAAGCTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAAAAAGTTTTT
AATTCAAAAACCAAAACATGTTTATAAAAGGACAAACTATTTAGACCAAACGATGCGATCTTTAG
AGCAAGTAATGTTCGAAAAATAGCTAGAAGGAATGGACCGTCTTGAATACTTAAGGTCCAAAGTT
ATAAAAGAACTCGTAAAATTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTC
TCACGTAAATAAGTTTTTAATTCAAACACCAAAACCTGTTTACAAAATGAAAAACTATTCAGAAA
AAATGATGCGATTTCCCGAGCATGGAATCTTCGAAAAACTGCCCAAAGGAATAGATCGCCTTGAA
TACTTTAAGGAACCAAAGTTATAAAACAAATCGCAAAAG
Found at i:13063 original size:63 final size:61
Alignment explanation
Indices: 12976--13165 Score: 208
Period size: 62 Copynumber: 3.0 Consensus size: 61
12966 TCGTAAAATG
* *
12976 TTTGACAAGTTC-AGATGTTCGTCCAAGAACCAAGAGAGAAACAACTCTTACGTAAAATAAGTT
1 TTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAA-TCTCACGT-AAATAAGTT
* * * *
13039 TTTGACAAGCTAT-G-AAGTTTGTCCAAGAACTAAGAGAGAAGCAATACTCATGTAAATAAGTT
1 TTTGACAAG-T-TCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAAT-CTCACGTAAATAAGTT
* *
13101 TTTGACAAGTTCGAAAGTTCGTCCAAGATCCAAGAGAG-AACAAATTCTCACGTAGATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAAC-AA-TCTCACGTAAATAAGTT
13163 TTT
1 TTT
13166 AATTCAGCGA
Statistics
Matches: 107, Mismatches: 12, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
60 1 0.01
61 4 0.04
62 59 0.55
63 41 0.38
64 1 0.01
65 1 0.01
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.27
Consensus pattern (61 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATCTCACGTAAATAAGTT
Found at i:13401 original size:62 final size:62
Alignment explanation
Indices: 13316--13501 Score: 248
Period size: 62 Copynumber: 3.0 Consensus size: 62
13306 ATCGTAAAAG
*
13316 TTTGAAAAGTTCGG-ATGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGAAAAGTTCGGAAT-TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * *
13378 TTTGACAAGTTTGGAATTTCGTCCAAGAACCGAGAGAGAAACAATTTTCACATAATTAAGTT
1 TTTGAAAAGTTCGGAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
13440 TTTGATAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCATGTAACTAAGTT
1 TTTGAAAAGTTCGGAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
13502 ACTAAGTAAC
Statistics
Matches: 107, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
62 105 0.98
63 2 0.02
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGAAAAGTTCGGAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:13521 original size:339 final size:336
Alignment explanation
Indices: 12768--13718 Score: 1116
Period size: 339 Copynumber: 2.8 Consensus size: 336
12758 TGTTTAAAAT
* * * *
12768 GTTCGGAAGTTCGTCTAAGAACAAAGAGAGAAACAGTTCTCACGTAAAAAAGTTTTTAATTCAA-
1 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAA-AATTCTCACGT-AATAAGTTTTTAATTCAAC
* * ** *
12832 AGACCAAAA-TATTTTTCAAAATGACAAACTATTTAGACCAAA-TGATGTGATCTTTAGAGCAAG
64 A-ACCAAAACT-GTTTACAAAATGACAAACTATTTAGACCAAATTG-TGT-AT-TTCCGAGCATG
* * * * * **
12895 TAATGTTTGGAAAATAGCTCGAAGGAATGGATCGT-CATGAATACCTTCAGGATTCGAAGTTATA
124 GAATGTTTGGAAAATTGCTCAAAGGAATGGATCCTACATGAATACTTTCAGGAACCGAAGTTATA
* *
12959 AAAGAAATCGTAAAATGTTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAACTCT
189 AAAGAAATCGTAAAA-GTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * *
13024 TACGTAAAATAAGTTTTTGACAAGCTATGAAGTTTGTCCAAGAACTAAGAGAGAAGCAATACTCA
253 CACGT-AAATAAGTTTTTGACAAGCTATGAAGTTTGTCCAAGAACCAAGAGAGAAACAATACTCA
**
13089 TGTAAATAAGTTTTTGACAA
317 CATAAATAAGTTTTTGACAA
* * *
13109 GTTCGAAAGTTCGTCCAAGATCCAAGAGAGAACAAATTCTCACGTAGATAAGTTTTTAATTCAGC
1 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAA-AAATTCTCACGTA-ATAAGTTTTTAATTCAAC
* *
13174 GACCAAAACTGTTTACAAAAGGACAAACTATTTAGACCAAATTGTGCTATTTCCCGAGCATGGAA
64 AACCAAAACTGTTTACAAAATGACAAACTATTTAGACCAAATTGTG-TATTT-CCGAGCATGGAA
*** *
13239 TGTTCAAAAAATTGCTCAAAGAAATGGATCCTAC-TGAATACTTTCAGGAACCGAAGTTATAAAA
127 TGTTTGGAAAATTGCTCAAAGGAATGGATCCTACATGAATACTTTCAGGAACCGAAGTTATAAAA
* *
13303 GAAATCGTAAAAGTTTGAAAAGTTCGGATGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCACG
192 GAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
* * **
13368 TAAATAAGTTTTTGACAAG-TTTGGAA-TTTCGTCCAAGAACCGAGAGAGAAACAATTTTCACAT
257 TAAATAAGTTTTTGACAAGCTAT-GAAGTTT-GTCCAAGAACCAAGAGAGAAACAATACTCACAT
* *
13431 AATTAAGTTTTTGATAA
320 AAATAAGTTTTTGACAA
* ** *
13448 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCATGTAACTAAGTTACTAAGT-AAC
1 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAA-AATTCTCACGTAA-TAAGTTTTTAATTCAAC
* * *
13512 AATCCAAAACTTGTTTACAAAATGACAAACTATTTTA-ACCACATGGTGTGATTTCTCTAGCATG
64 AA-CCAAAAC-TGTTTACAAAATGACAAACTA-TTTAGACCAAATTGTGT-ATTTC-CGAGCATG
* * *
13576 GAATGTTTGGAAATTTGCTCAAAGGAATGGA-CC-ATCTTGAATACTTT-AGGAACCTAAGTTAT
124 GAATGTTTGGAAAATTGCTCAAAGGAATGGATCCTA-CATGAATACTTTCAGGAACCGAAGTTAT
* * * * *
13638 AAAATAACTCGTGAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
188 AAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
13703 CACGTAAATAAGTTTT
253 CACGTAAATAAGTTTT
13719 AAATTCAAAC
Statistics
Matches: 526, Mismatches: 65, Indels: 40
0.83 0.10 0.06
Matches are distributed among these distances:
338 11 0.02
339 213 0.40
340 128 0.24
341 168 0.32
342 6 0.01
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (336 bp):
GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAAAATTCTCACGTAATAAGTTTTTAATTCAACAA
CCAAAACTGTTTACAAAATGACAAACTATTTAGACCAAATTGTGTATTTCCGAGCATGGAATGTT
TGGAAAATTGCTCAAAGGAATGGATCCTACATGAATACTTTCAGGAACCGAAGTTATAAAAGAAA
TCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA
TAAGTTTTTGACAAGCTATGAAGTTTGTCCAAGAACCAAGAGAGAAACAATACTCACATAAATAA
GTTTTTGACAA
Found at i:14303 original size:431 final size:426
Alignment explanation
Indices: 13440--14583 Score: 1296
Period size: 431 Copynumber: 2.6 Consensus size: 426
13430 TAATTAAGTT
* * * **
13440 TTTGATAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCATGTAACTAAGTTACT
1 TTTGAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTT
* * * * *
13505 AAGT-AACAATCCAAAACTTGTTTACAAAATGACAAACTATTTTAACCACATGGTGTGATTTCTC
66 AATTCAA-AAACCAAAACATGTTTACAAAATGACAAACTATTTTGACC-CATGATGTGATTT-TC
* * * * *
13569 TAGCATGGAATGTTTGGAAATTTGCTCA-AAGGAATGGACCATCTTGAATACTTTAGGAACCTAA
128 GAGCAT-GAATGTTTGGAAAATT-CT-AGAAGGAATGGACCGTCTTGAATACTTTAGG-TCCGAA
* *
13633 GTTATAAAATAACTCGTGAAAGTTTGACAAGTTC-GAAAGTTCGTCCAAGAACCAAGAGAGAAAC
189 GTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAAC
* * * * *
13697 AATTCTCACGTAAATAAGTTTTAAATTCAAACACCAAAACTTGTTTACGAACTGACAAACTATTT
253 AATTCTCACGTAAATAAGTTTTTAATTCAAACACCAAAACCTGTTTACAAAATGACAAACTATTC
* * * * * * * *
13762 AGACAAAATTATGTGATTTCCTGAGCATGGAATGTTTGAAAAATTGCTCAAAGGAATAGATCATC
318 AGACAAAATGATGCGATTTCCCGAGCATGGAATCTTCGAAAAACTGCCCAAAGGAATAGATCACC
*
13827 TTGAATACTCGTAGGAACCGAAGTTATAAAAGAAATCGCAAAAG
383 TTGAATACTCGTAGGAACCGAAGTTATAAAACAAATCGCAAAAG
* * * * * * *
13871 TTTGACAAGTTTGGATGTTCGTCCAAGAGCCAAGAGAGAAACAATTCTTACGTAATTAAGTTTTT
1 TTTGAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTT
* * * * *
13936 AATTCAAAAACCAAAACATGTTTACGAAAGGACAAACTCTTTTGACCCTACGATGCGATTTTACG
66 AATTCAAAAACCAAAACATGTTTACAAAATGACAAACTATTTTGACCC-ATGATGTGATTTT-CG
* *
14001 AGCATGAAGTGTTCGAAAAATTCTAGAAGGAATGGACCGTCTTGAATA-TTGTAAGGTGCCGAAG
129 AGCATGAA-TGTTTGGAAAATTCTAGAAGGAATGGACCGTCTTGAATACTT-T-AGGT-CCGAAG
* * *
14065 TTATAAAAGAACTCGTAAAAG-TTGAAAATTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAA
190 TTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAA
* * *
14129 TTCTCACGTAAATAAGTTTTTAATTGAAAGACCAAATCCTGTTTACAAAATGACAAACTATTCAG
255 TTCTCACGTAAATAAGTTTTTAATTCAAACACCAAAACCTGTTTACAAAATGACAAACTATTCAG
* * * *
14194 ACCAAATGATGCGATTTCCCGAGCATGGAAATCTTCGAAAAACTGCCCGAAGGAATGGATCGCCT
320 ACAAAATGATGCGATTTCCCGAGCATGG-AATCTTCGAAAAACTGCCCAAAGGAATAGATCACCT
* * * *
14259 TGAATACT-TTAAGGAATCGAAGTTATAAAACAACTCGTAAAAG
384 TGAATACTCGT-AGGAACCGAAGTTATAAAACAAATCGCAAAAG
* * * * *
14302 TTT-AAAATGTTCGGAAATTCATCTAAGAACGAAGAGAGAAATAGTTCTCACGTAAATAAGTTTT
1 TTTGAAAA-GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTT
* * * * *
14366 TAATTCAAAGACCAAAATAT-TTTTCAAAATGACAAACTATTTAGACCAAATGATGTGATTTTCA
65 TAATTCAAAAACCAAAACATGTTTACAAAATGACAAACTATTTTGACC-CATGATGTGATTTTC-
* * * * * **
14430 GAGCAAGGAATGTTTGGAAAATAGCTCGAAGGAATGGATCGTCCTGAATACCTTTAGGATTTGAA
128 GAGC-ATGAATGTTTGGAAAAT-TCTAGAAGGAATGGACCGTCTTGAATA-CTTTAGG-TCCGAA
* *
14495 GTTATAAAAGAAATCGTAAAATGTTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAAC
189 GTTATAAAAGAACTCGTAAAA-GTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAAC
*
14560 AATTCTTACGTAAAATAAGTTTTT
253 AATTCTCACGT-AAATAAGTTTTT
14584 GACAAGCTCG
Statistics
Matches: 597, Mismatches: 94, Indels: 41
0.82 0.13 0.06
Matches are distributed among these distances:
429 4 0.01
430 199 0.33
431 328 0.55
432 5 0.01
433 49 0.08
434 12 0.02
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (426 bp):
TTTGAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTT
AATTCAAAAACCAAAACATGTTTACAAAATGACAAACTATTTTGACCCATGATGTGATTTTCGAG
CATGAATGTTTGGAAAATTCTAGAAGGAATGGACCGTCTTGAATACTTTAGGTCCGAAGTTATAA
AAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAATTCAAACACCAAAACCTGTTTACAAAATGACAAACTATTCAGACAAAA
TGATGCGATTTCCCGAGCATGGAATCTTCGAAAAACTGCCCAAAGGAATAGATCACCTTGAATAC
TCGTAGGAACCGAAGTTATAAAACAAATCGCAAAAG
Found at i:14664 original size:62 final size:62
Alignment explanation
Indices: 14518--14707 Score: 265
Period size: 62 Copynumber: 3.0 Consensus size: 62
14508 TCGTAAAATG
* *
14518 TTTGACAAGTTC-AGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAAATAAGTT
1 TTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAATAAGTT
* * * * *
14581 TTTGACAAGCTCGAAAGTTCGTCCAAGAACTAAGAGAGAAGCAATACCCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
14643 TTTGACAAGTTCGAAAGTTCGTCCAAGATCCAAGAGAGAACCAATTCTCACGTAGATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
14705 TTT
1 TTT
14708 AATTCAGCGA
Statistics
Matches: 112, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
62 67 0.60
63 44 0.39
64 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (62 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:14950 original size:62 final size:62
Alignment explanation
Indices: 14881--15037 Score: 251
Period size: 62 Copynumber: 2.5 Consensus size: 62
14871 GGATGTTCAT
* * *
14881 CCAAGAACCAAGAGTGAAACAATTCTCACGTAAATAAGTTTTCGACAAGTTTGGAATTTTGA
1 CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTCGACAAGTTTGGAAGTTCGA
* * * *
14943 CCAAGAACGAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGATAAGTTTGGAAGTTCGT
1 CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTCGACAAGTTTGGAAGTTCGA
15005 CCAAGAACCAAGAGAGAAACAATTCTCACGTAA
1 CCAAGAACCAAGAGAGAAACAATTCTCACGTAA
15038 CTGAGTTATT
Statistics
Matches: 87, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 87 1.00
ACGTcount: A:0.41, C:0.17, G:0.18, T:0.24
Consensus pattern (62 bp):
CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTCGACAAGTTTGGAAGTTCGA
Found at i:15030 original size:340 final size:338
Alignment explanation
Indices: 14326--15263 Score: 1163
Period size: 341 Copynumber: 2.8 Consensus size: 338
14316 AAATTCATCT
* * * *
14326 AAGAACGAAGAGAGAAATAGTTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA-TAT-TTT
1 AAGAACCAAGAGAGAAACAATTCTCACGT-AATAAGTTTTTAATTCAACGACCAAAACT-TGTTT
* * * * *
14389 TCAAAATGACAAACTATTTAGACCAAA-TGATGTGATTTTCAGAGCAAGGAATGTTTGGAAAATA
64 ACAAAATGACAAACTATTTAGACCAAATTG-TGTGATTTCCCGAGCATGGAATGTTTGGAAAATT
* ***
14453 GCTCGAAGGAATGGATCGTCCTGAATACCTTTAGGATTTGAAGTTATAAAAGAAATCGTAAAATG
128 GCTCAAAGGAATGGATCGTCCTGAATA-CTTTAGGAACCGAAGTTATAAAAGAAATCGTAAAA-G
* * *
14518 TTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAAATAAGTTTT
191 TTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAATAAGTTTT
* * * *
14583 TGACAAGCTCGAAAGTTCGTCCAAGAACTAAGAGAGAAGCAATACCCACGTAAATAAGTTTTTGA
255 CGACAAGCTCGAAAGTTCGACCAAGAACGAAGAGAGAAACAATACCCACGTAAATAAGTTTTTGA
14648 CAAGTTCGAAAGTTCGTCC
320 CAAGTTCGAAAGTTCGTCC
* * *
14667 AAGATCCAAGAGAGAACCAATTCTCACGTAGATAAGTTTTTAATTCAGCGACCAAAACTTGTTTA
1 AAGAACCAAGAGAGAAACAATTCTCACGTA-ATAAGTTTTTAATTCAACGACCAAAACTTGTTTA
* * **
14732 CAAAAGGACAAACTATTTAGACCAAATTGTGCT-ATTTCCCGATCATGGAATG-TTCAAAACATT
65 CAAAATGACAAACTATTTAGACCAAATTGTG-TGATTTCCCGAGCATGGAATGTTTGGAAA-ATT
*
14795 GCTCAAAGGAATGGATCCTCCTGAATACTTTCAGGAACCGAAGTTATAAAAGAAATCGTAAAAGT
128 GCTCAAAGGAATGGATCGTCCTGAATACTTT-AGGAACCGAAGTTATAAAAGAAATCGTAAAAGT
*
14860 TTGA-AAGGTTCGGATGTTCATCCAAGAACCAAGAGTGAAACAATTCTCACGTAAATAAGTTTTC
192 TTGACAA-GTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTC
* * * * * * * *
14924 GACAAGTTTGGAATTTTGACCAAGAACGAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAT
256 GACAAGCTCGAAAGTTCGACCAAGAACGAAGAGAGAAACAATACCCACGTAAATAAGTTTTTGAC
* *
14989 AAGTTTGGAAGTTCGTCC
321 AAGTTCGAAAGTTCGTCC
* * *
15007 AAGAACCAAGAGAGAAACAATTCTCACGTAACTGAGTTATTAATT-AACAGTCCAAAACTTGTTT
1 AAGAACCAAGAGAGAAACAATTCTCACGTAA-TAAGTTTTTAATTCAAC-GACCAAAACTTGTTT
* * * * * *
15071 ACAAAATGAGAAACTATTTTGACCAGATGGTGTGATTTCTCGAGCATGGAAATGTTTGGAAATTT
64 ACAAAATGACAAACTATTTAGACCAAATTGTGTGATTTCCCGAGCATGG-AATGTTTGGAAAATT
* * * * *
15136 GCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTAAAAAAGAACTCGTGAAAGT
128 GCTCAAAGGAATGGATCGTCCTGAATACTTT-AGGAACCGAAGTTATAAAAGAAATCGTAAAAGT
* ** *
15201 TTGACAAGTTCGTAAATTCGA-CCAAGAACCGAGAGAGAAACAATTCTCACGTAAATAAGTTTT
192 TTGACAAGTTCGGATGTTC-ATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
15264 TAATTCAAAC
Statistics
Matches: 515, Mismatches: 67, Indels: 30
0.84 0.11 0.05
Matches are distributed among these distances:
339 4 0.01
340 177 0.34
341 222 0.43
342 109 0.21
343 3 0.01
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (338 bp):
AAGAACCAAGAGAGAAACAATTCTCACGTAATAAGTTTTTAATTCAACGACCAAAACTTGTTTAC
AAAATGACAAACTATTTAGACCAAATTGTGTGATTTCCCGAGCATGGAATGTTTGGAAAATTGCT
CAAAGGAATGGATCGTCCTGAATACTTTAGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGA
CAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTCGACAA
GCTCGAAAGTTCGACCAAGAACGAAGAGAGAAACAATACCCACGTAAATAAGTTTTTGACAAGTT
CGAAAGTTCGTCC
Found at i:16152 original size:63 final size:62
Alignment explanation
Indices: 16064--16252 Score: 236
Period size: 62 Copynumber: 3.0 Consensus size: 62
16054 TCGTAAAATG
* * * *
16064 TTTGACAAGTTCAGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTTACGTAAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAATAAGTT
* * * * * *
16127 TTTGACAAGCTCGGAAGTTCGTCCAAGAACTAAGAGAGAAGCGATACTCACATAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
16189 TTTGACAAGTTCGGAAGCTCGTCCAAGATCCAAGAGAGAACCAATTCTCACG-AGATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
16250 TTT
1 TTT
16253 AAATCAGCGA
Statistics
Matches: 107, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
61 11 0.10
62 53 0.50
63 43 0.40
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:16504 original size:62 final size:62
Alignment explanation
Indices: 16412--16582 Score: 207
Period size: 62 Copynumber: 2.8 Consensus size: 62
16402 AGTTTGAAAG
* * * * *
16412 GTTCGGATGTTCGTCCAAGAGCCAATAGAGAAACAATTCTCACGTAAATAACTTTTCGACAA
1 GTTCGGAAGTTCGACCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAACTTTTCGACAA
* * * * * * *
16474 GTTTGGAATTTCGACCAAGAACAAAGAGAGAAAAAATTATCACGTAAATAAGTTTTTGATAA
1 GTTCGGAAGTTCGACCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAACTTTTCGACAA
* * *
16536 GTTCGGAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCACGTAA
1 GTTCGGAAGTTCGACCAAGAACAAAGAGAGAAACAATTCTCACGTAA
16583 CTGAGTTATT
Statistics
Matches: 90, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
62 90 1.00
ACGTcount: A:0.40, C:0.17, G:0.18, T:0.25
Consensus pattern (62 bp):
GTTCGGAAGTTCGACCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAACTTTTCGACAA
Found at i:16692 original size:341 final size:338
Alignment explanation
Indices: 15856--16808 Score: 1173
Period size: 341 Copynumber: 2.8 Consensus size: 338
15846 AGTTTAAAAT
* * * *
15856 GTTCGGAAGTTCGTCTAAGAACAAAGAGAGAAACAGTTCTCATGTAAATAAGTTTTTAATTCAAA
1 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AATAAGTTTTTAATT-AAA
* * *
15921 GACCAAAA-TAT-TTTTCAAAATGACAAACTATTTAGACCAAATGATGTGATTT-TCAGAGCAAG
64 GACCAAAACT-TGTTTACAAAATGACAAACTATTTAGACCAAATGGTGTGATTTCTC-GAGCATG
* * * * * **
15983 TAATGTTTGGAAAATAGCTCGAAGGAATGGATCGTCATGAATACCTTCAGGATTCGAAGTTATAA
127 AAATGTTTGGAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTCAGGAACCGAAGTTATAA
* * *
16048 AAGAAATCGTAAAATGTTTGACAAGTTCAGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTT
192 AAGAAATCGTAAAA-GTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * * ***
16113 ACGTAAAATAAGTTTTTGACAAGCTCGGAAGTTCGTCCAAGAACTAAGAGAGAAGCGATACTCAC
256 ACGT-AAATAAGTTTTCGACAAGCTCGGAAGTTCGACCAAGAACAAAGAGAGAAAAAATACTCAC
16178 ATAAATAAGTTTTTGACAA
320 ATAAATAAGTTTTTGACAA
* * * * **
16197 GTTCGGAAGCTCGTCCAAGATCCAAGAGAGAACCAATTCTCACG-AGATAAGTTTTTAAATCAGC
1 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA-ATAAGTTTTT-AATTAAA
* * ** * *
16261 GACCAAAACTTGTTTACAAAAGGACAAACTATTTAGACCAAATCGTACGACTTCCCGAGCATGAA
64 GACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGGTGTGATTTCTCGAGCATGAA
***
16326 ATGTTCAAAAAATTGCTCAAAGGAATGGATAC-TCTTGAATACTTTCAGGAACCGAAGTTATAAA
129 ATGTTTGGAAAATTGCTCAAAGGAATGGAT-CGTCTTGAATACTTTCAGGAACCGAAGTTATAAA
* *
16390 AGAAATCGTAAAAGTTTGA-AAGGTTCGGATGTTCGTCCAAGAGCCAATAGAGAAACAATTCTCA
193 AGAAATCGTAAAAGTTTGACAA-GTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * * *
16454 CGTAAATAACTTTTCGACAAGTTTGGAATTTCGACCAAGAACAAAGAGAGAAAAAATTA-TCACG
257 CGTAAATAAGTTTTCGACAAGCTCGGAAGTTCGACCAAGAACAAAGAGAGAAAAAA-TACTCACA
*
16518 TAAATAAGTTTTTGATAA
321 TAAATAAGTTTTTGACAA
* * *
16536 GTTCGGAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCACGTAACTGAGTTATTAATTAATA
1 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA-TAAGTTTTTAATTAA-A
* * * * *
16601 GTCGAAAACTTGTTTACAAAATGAGAAACTATTTTGACCAGATGGTGTGATTTCTCGAGCATGGA
64 GACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGGTGTGATTTCTCGAGCAT-GA
* * *
16666 AATGTTTGGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAA
128 AATGTTTGGAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTCAGGAACCGAAGTTATAAA
* * * * *
16731 AGAACTCGTGAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCGAGAGAGAAACAATTCTCAC
193 AGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
16796 GTAAATAAGTTTT
258 GTAAATAAGTTTT
16809 TAATTCAAAC
Statistics
Matches: 518, Mismatches: 80, Indels: 28
0.83 0.13 0.04
Matches are distributed among these distances:
339 112 0.22
340 128 0.25
341 274 0.53
342 4 0.01
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (338 bp):
GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATAAGTTTTTAATTAAAGA
CCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGGTGTGATTTCTCGAGCATGAAAT
GTTTGGAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTCAGGAACCGAAGTTATAAAAGA
AATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
AATAAGTTTTCGACAAGCTCGGAAGTTCGACCAAGAACAAAGAGAGAAAAAATACTCACATAAAT
AAGTTTTTGACAA
Found at i:17752 original size:62 final size:62
Alignment explanation
Indices: 17609--17798 Score: 202
Period size: 62 Copynumber: 3.0 Consensus size: 62
17599 TCGTAAAAAG
* * * * *
17609 TTTGACAAGTTCAGATGTTCGTCCAAGCACCAAGACAGAAACAATTCTTACATAAAATAA-GT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGACAGAAACAATTCTCACGT-AAATAAGGT
* * * * *
17671 GTTTGACAAGCTCGAAAGTTCGTCCAAGAACCAAGAGAGAAGCAATACTCACGTAAATAAGGT
1 -TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGACAGAAACAATTCTCACGTAAATAAGGT
* * * * * * *
17734 TTTGACAAGTTCGGAAGTTTGTCCAAGATCTAAGACAGAACCAATTGTCACGTAGATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGACAGAAACAATTCTCACGTAAATAAGGT
17796 TTT
1 TTT
17799 AATTCAGCGA
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
62 60 0.57
63 45 0.43
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGACAGAAACAATTCTCACGTAAATAAGGT
Found at i:18047 original size:62 final size:62
Alignment explanation
Indices: 17950--18135 Score: 304
Period size: 62 Copynumber: 3.0 Consensus size: 62
17940 ATCGTAAAAG
17950 TTTGAAAAGTTCGG-ATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGAAAAGTTCGGAAT-TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
18012 TTTGAAAAGTTCGGAATTTCGTCCAAGAATCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGAAAAGTTCGGAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
18074 TTTGATAAGTTCGAAAGTTT-GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGAAAAGTTCGGAA-TTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
18136 ATTAATTAAA
Statistics
Matches: 117, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
62 112 0.96
63 5 0.04
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (62 bp):
TTTGAAAAGTTCGGAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:18208 original size:340 final size:337
Alignment explanation
Indices: 17401--18355 Score: 1122
Period size: 341 Copynumber: 2.8 Consensus size: 337
17391 AGTTTAAAAT
* * * *
17401 GTTCGGAAGTTCGTCTAAGAACAAAGAGAGAAACAGTTCTCACGTAAATAAGTTTTTAATTCCAA
1 GTTCGGAAGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGT-AATAAGTTTTTAATTCAAA
* * *
17466 GACCAAAATATTTTTCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT-AGA
65 GACCAAACT-TTTTACAAAATGACAAACTATTTAGACCAAATGGTGCGATTTCCCGAGCATGA-A
* * * * * *
17530 ATGTTCGAAAAATAGATCGAAGGAATGGATTGTCATGAATACCTTCAGGAACAGAAGTTATAAAA
128 ATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCATGAATACATTAAGGAACAGAAGTTATAAAA
* * * *
17595 GAAATCGTAAAAAGTTTGACAAGTTCAGATGTTCGTCCAAGCACCAAGACAGAAACAATTCTTAC
193 GAAATCGT-AAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
* * * *
17660 ATAAAATAAGTGTTTGACAAGCTCGAAAGTTCGTCCAAGAACCAAGAGAGAAGCAATACTCACGT
257 GT-AAATAAGTTTTTGAAAAGCTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGT
17725 AAATAAGGTTTTGACAA
321 AAATAAGGTTTTGACAA
* * * * * **
17742 GTTCGGAAGTTTGTCCAAGATCTAAGACAGAACCAATTGTCACGTAGATAAGTTTTTAATTCAGC
1 GTTCGGAAGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGTA-ATAAGTTTTTAATTCAAA
* *
17807 GACCAAAACTTATTTACAAAAGGACAAACTATTTAGACCAAATTGTGCGATTTCCCGAGCATGAA
65 GACC-AAACTT-TTTACAAAATGACAAACTATTTAGACCAAATGGTGCGATTTCCCGAGCATGAA
* * * * *
17872 ATGTTCAAAAAATTGCTCAAAGGAATGGATCCTCCTGAATACTTTTAGGAACAGAAGTTATAAAA
128 ATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCATGAATACATTAAGGAACAGAAGTTATAAAA
*
17937 GAAATCGTAAAAGTTTGAAAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
193 GAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
* * * * *
18002 TAAATAAGTTTTTGAAAAGTTCGGAATTTCGTCCAAGAATCAAGAGAGAAACAATTCTCACGTAA
258 TAAATAAGTTTTTGAAAAGCTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAA
* *
18067 ATAAGTTTTTGATAA
323 ATAAGGTTTTGACAA
* * * *
18082 GTTCGAAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAAAA
1 GTTCGGAAGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAA-TAAGTTTTTAATTCAAA
* * * * * * *
18147 GTCCACAACTTGTTTAGAAAATGACAAACTATTTTGACCAGATGGTGTGATTTCTCGAGCATGGG
65 GACCA-AACTT-TTTACAAAATGACAAACTATTTAGACCAAATGGTGCGATTTCCCGAGCAT-GA
* * * * * * * * **
18212 AATGTTTGGAAATTTGCTTAAGGGAATGGATCGTCTTAAAAACATTAAGGAACCTAAGTTATAAA
127 AATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCATGAATACATTAAGGAACAGAAGTTATAAA
* * * * * * * * *
18277 AGAACTCATGAAAGTTTGACTAGTTCGAAAGTTCGTCCAAGAATCGAGATG-GAAATAATTCTCA
192 AGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGA-GAGAAACAATTCTCA
18341 CGTAAATAAGTTTTT
256 CGTAAATAAGTTTTT
18356 AATTCAAACA
Statistics
Matches: 521, Mismatches: 85, Indels: 16
0.84 0.14 0.03
Matches are distributed among these distances:
339 2 0.00
340 174 0.33
341 228 0.44
342 116 0.22
343 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.27
Consensus pattern (337 bp):
GTTCGGAAGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAATAAGTTTTTAATTCAAAG
ACCAAACTTTTTACAAAATGACAAACTATTTAGACCAAATGGTGCGATTTCCCGAGCATGAAATG
TTCGAAAAATTGCTCAAAGGAATGGATCGTCATGAATACATTAAGGAACAGAAGTTATAAAAGAA
ATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA
ATAAGTTTTTGAAAAGCTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATA
AGGTTTTGACAA
Found at i:18694 original size:215 final size:214
Alignment explanation
Indices: 18095--19214 Score: 923
Period size: 215 Copynumber: 5.2 Consensus size: 214
18085 CGAAAGTTTG
* * * ** * * *
18095 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAAAAGTCCACAACTTGT
1 TCCAAGAACCAAGAGAGAAACAGTTCTCACGTAAATAAGTTTTTAATTCGAAGACCAAAACATGT
* * * * * *
18160 TTA-GAAAATGACAAACTATTT-TGACCAGATGGTGTGATTTCTCGAGCATGGGAATGTTTGGAA
66 TTATG-AAATGACAAACT-TTTCAGACCAAATGATGCGATTTCTCGAGCA--AGAATG-TTCGAA
** * * * * * * * * *
18223 ATTTGCT-TAAGGGAATGGATCGTCTTAAAAACATTAAGGAACCTAAGTTATAAAAGAACTCATG
126 AAATGCTCGAA-GGAATGGATCGTCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAAATCGTA
* * *
18287 AAAGTTTGACTAGTTC-GAAAGTTCG
190 AAAATTTGACAAGTTCAG-AAGTTCA
* * * * * * *
18312 TCCAAGAATCGAGATG-GAAATAATTCTCACGTAAATAAGTTTTTAATTCAAACACCGAAAC---
1 TCCAAGAACCAAGA-GAGAAACAGTTCTCACGTAAATAAGTTTTTAATTCGAAGACCAAAACATG
* * * * * * * * * *
18373 --T-TG--TTGACAAACTATTAAGAACAAATTATGAGATTTCCCGTGCATGGAATGTTCAAAAAA
65 TTTATGAAATGACAAACTTTTCAGACCAAATGATGCGATTTCTCGAGCA-AGAATGTTCGAAAAA
* * * *
18433 TTGCTCGAAGGAATAGATCGTCTTGAATACTTTCAGGAATCGAAGTTATGAAAGAAATCGCAAAA
129 -TGCTCGAAGGAATGGATCGTCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAAATCGTAAAA
* *
18498 GTTTGACAAGTTCAGATGTTCA
193 ATTTGACAAGTTCAGAAGTTCA
* * * *
18520 TCCAGGAGCCAAGAGCGAAACAGTTCGT-ACGTAAATAAGTTTTTAATTCGAATACCAAAACATG
1 TCCAAGAACCAAGAGAGAAACAGTTC-TCACGTAAATAAGTTTTTAATTCGAAGACCAAAACATG
* * *
18584 TTTATGAAATGACAAACTTTTCAGACCATACGATGCGATTT-TACGAGCACAGAGTGTTCGAAAA
65 TTTATGAAATGACAAACTTTTCAGACCAAATGATGCGATTTCT-CGAGCA-AGAATGTTCGAAAA
* * * ** * *
18648 ATTCTCGAAGGAATGGATCGTCTTGAATACTGTAAGGCGCCGAAGTTATAAAAGAACTTGTAAAA
128 ATGCTCGAAGGAATGGATCGTCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAAATCGTAAAA
* *
18713 ATTTAAGAAGTTCAGAAGTTCA
193 ATTTGACAAGTTCAGAAGTTCA
* * * * *
18735 TTCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATT-GAAAGACCAAATCCTG
1 TCCAAGAACCAAGAGAGAAACAGTTCTCACGTAAATAAGTTTTTAATTCG-AAGACCAAAACATG
** * * * *
18799 TTTACAAAATGACAAACTATTCAGACCAAATGATGCGATTTCTTGAGCATGGAAATCTTCGAAAA
65 TTTATGAAATGACAAACTTTTCAGACCAAATGATGCGATTTCTCGAGCA-AG-AATGTTCGAAAA
* * * * * *
18864 ACTGCCCGAAGTAACGGATCGTCTTGAATACTTTCAGGAATCGAAGTTATAAAACAACTCGTAAA
128 A-TGCTCGAAGGAATGGATCGTCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAAATCGTAAA
* * *
18929 AATTT-AAAATGTTCGGAAGTTCG
192 AATTTGACAA-GTTCAGAAGTTCA
* * * * *
18952 TCTAAGAACAAAGAGAGAAACAGTTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAATAT-T
1 TCCAAGAACCAAGAGAGAAACAGTTCTCACGTAAATAAGTTTTTAATTCGAAGACCAAAACATGT
*
19016 TT-TCGAAATGACAAACTATTT-AGACCAAATGATGCGATTTCTCGAGCAAGGAATATTCGACAA
66 TTAT-GAAATGACAAACT-TTTCAGACCAAATGATGCGATTTCTCGAGCAA-GAATGTTCGA-AA
* * *
19079 AATAGCTCGAAGGAATGGATCGTCATGAAAACCTTCAGGAACCGAAGTTATAAAAGAAATCGTAA
127 AAT-GCTCGAAGGAATGGATCGTCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAAATCGTAA
* *
19144 AATGTTTTGACAAGTTCAGATGTTCA
191 AA--ATTTGACAAGTTCAGAAGTTCA
* * * * *
19170 ACCAAGAATCAAGAGACAAACAATT-TCTACATAAAATAAGTTTTT
1 TCCAAGAACCAAGAGAGAAACAGTTCTC-ACGT-AAATAAGTTTTT
19215 GACAAGCTCG
Statistics
Matches: 721, Mismatches: 148, Indels: 66
0.77 0.16 0.07
Matches are distributed among these distances:
207 6 0.01
208 121 0.17
209 32 0.04
212 2 0.00
213 1 0.00
214 4 0.01
215 173 0.24
216 157 0.22
217 173 0.24
218 37 0.05
219 15 0.02
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.27
Consensus pattern (214 bp):
TCCAAGAACCAAGAGAGAAACAGTTCTCACGTAAATAAGTTTTTAATTCGAAGACCAAAACATGT
TTATGAAATGACAAACTTTTCAGACCAAATGATGCGATTTCTCGAGCAAGAATGTTCGAAAAATG
CTCGAAGGAATGGATCGTCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAAATCGTAAAAATT
TGACAAGTTCAGAAGTTCA
Found at i:18968 original size:217 final size:213
Alignment explanation
Indices: 18080--19214 Score: 993
Period size: 217 Copynumber: 5.3 Consensus size: 213
18070 AGTTTTTGAT
* * * * *
18080 AAGTTCGAAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
1 AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* * * ** * * *
18145 AAGTCCACAACTTGTTTAGAAAATGACAAACTATTTTGACCAGATGGTGTGATTTCTCGAGCATG
66 AAGACCA-AACATGTTTACAAAATGACAAACTATTCAGACCAAATGATGCGATTTCTCGAGCAT-
* ** * * * * * *
18210 GGAATGTTTGGAAATTTGCT-TAAGGGAATGGATCGTCTTAAAAACATTAAGGAACCTAAGTTAT
129 GGAATG-TTCGAAAAATGCTCGAA-GGAATGGATCGTCTTGAATACTTTCAGGAACCGAAGTTAT
* * * *
18274 AAAAGAACTCATGAAAGTTTGAC
192 AAAAGAACTCGTAAAAATTT-AA
* * * * *
18297 TAGTTCGAAAGTTCGTCCAAGAATCGAGATG-GAAATAATTCTCACGTAAATAAGTTTTTAATTC
1 AAGTTCGGAAGTTCGTCCAAGAACCAAGA-GAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * * * * * * *
18361 AAACACCGAAAC-T-TGT------TGACAAACTATTAAGAACAAATTATGAGATTTCCCGTGCAT
65 AAAGACC-AAACATGTTTACAAAATGACAAACTATTCAGACCAAATGATGCGATTTCTCGAGCAT
* * * *
18418 GGAATGTTCAAAAAATTGCTCGAAGGAATAGATCGTCTTGAATACTTTCAGGAATCGAAGTTATG
129 GGAATGTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATACTTTCAGGAACCGAAGTTATA
* * * *
18483 AAAGAAATCGCAAAAGTTTGAC
193 AAAGAACTCGTAAAAATTT-AA
* * * * * * *
18505 AAGTTCAGATGTTCATCCAGGAGCCAAGAGCGAAACAGTTCGT-ACGTAAATAAGTTTTTAATTC
1 AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTC-TCACGTAAATAAGTTTTTAATTC
* * ** * * *
18569 GAATACCAAAACATGTTTATGAAATGACAAACTTTTCAGACCATACGATGCGATTT-TACGAGCA
65 AAAGACC-AAACATGTTTACAAAATGACAAACTATTCAGACCAAATGATGCGATTTCT-CGAGCA
** * * * * **
18633 CAGAGTGTTCGAAAAATTCTCGAAGGAATGGATCGTCTTGAATACTGTAAGGCGCCGAAGTTATA
128 TGGAATGTTCGAAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTCAGGAACCGAAGTTATA
*
18698 AAAGAACTTGTAAAAATTTAA
193 AAAGAACTCGTAAAAATTTAA
* * * * *
18719 GAAGTTCAGAAGTTCATTCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTG
1 -AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* *
18784 AAAGACCAAATCCTGTTTACAAAATGACAAACTATTCAGACCAAATGATGCGATTTCTTGAGCAT
65 AAAGACCAAA-CATGTTTACAAAATGACAAACTATTCAGACCAAATGATGCGATTTCTCGAGCAT
* * * * *
18849 GGAAATCTTCGAAAAACTGCCCGAAGTAACGGATCGTCTTGAATACTTTCAGGAATCGAAGTTAT
129 GG-AATGTTCGAAAAA-TGCTCGAAGGAATGGATCGTCTTGAATACTTTCAGGAACCGAAGTTAT
*
18914 AAAACAACTCGTAAAAATTTAA
192 AAAAGAACTCGTAAAAATTTAA
* * * *
18936 AATGTTCGGAAGTTCGTCTAAGAACAAAGAGAGAAACAGTTCTCACATAAATAAGTTTTTAATTC
1 AA-GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * * * *
19001 AAAGACCAAA-ATATTTTTCGAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCAA
65 AAAGACCAAACAT-GTTTACAAAATGACAAACTATTCAGACCAAATGATGCGATTTCTCGAGCAT
* * * *
19065 GGAATATTCGACAAAATAGCTCGAAGGAATGGATCGTCATGAAAACCTTCAGGAACCGAAGTTAT
129 GGAATGTTCGA-AAAAT-GCTCGAAGGAATGGATCGTCTTGAATACTTTCAGGAACCGAAGTTAT
* * *
19130 AAAAGAAATCGTAAAATGTTTTGAC
192 AAAAGAACTCGTAAAA--ATTT-AA
* * ** * * *
19155 AAGTTCAGATGTTCAACCAAGAATCAAGAGACAAACAATT-TCTACATAAAATAAGTTTTT
1 AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC-ACGT-AAATAAGTTTTT
19215 GACAAGCTCG
Statistics
Matches: 741, Mismatches: 147, Indels: 58
0.78 0.16 0.06
Matches are distributed among these distances:
207 6 0.01
208 119 0.16
209 36 0.05
210 2 0.00
214 5 0.01
215 172 0.23
216 162 0.22
217 186 0.25
218 38 0.05
219 15 0.02
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.27
Consensus pattern (213 bp):
AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
AAGACCAAACATGTTTACAAAATGACAAACTATTCAGACCAAATGATGCGATTTCTCGAGCATGG
AATGTTCGAAAAATGCTCGAAGGAATGGATCGTCTTGAATACTTTCAGGAACCGAAGTTATAAAA
GAACTCGTAAAAATTTAA
Found at i:19240 original size:63 final size:64
Alignment explanation
Indices: 19148--19338 Score: 180
Period size: 63 Copynumber: 3.0 Consensus size: 64
19138 TCGTAAAATG
* * ** * *
19148 TTTTGACAAGT-TCAGATGTTCAACCAAGAATCAAGAGACAAACAATTTCT-ACATAAAATAAGT
1 TTTTGACAAGTCTCGGAAGTTCGTCCAAGAATCAAGAGAGAAACAATTACTCACAT-AAATAAGT
* * *
19211 TTTTGACAAG-CTCGGAAGTTCGTCTAAGAA-CTAAGAGAGAAGCAA-TACTCACGTAAATAAGT
1 TTTTGACAAGTCTCGGAAGTTCGTCCAAGAATC-AAGAGAGAAACAATTACTCACATAAATAAGT
* * * * *
19273 TTTTGACAAGTTTGGGAAGTTCGTCCAAG-ATCCAAGAGAGAACCAATT-CTCACGTAGATAAGT
1 TTTTGACAAGTCTCGGAAGTTCGTCCAAGAAT-CAAGAGAGAAACAATTACTCACATAAATAAGT
19336 TTT
1 TTT
19339 AAATTCAGCG
Statistics
Matches: 107, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
62 23 0.21
63 82 0.77
64 2 0.02
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.27
Consensus pattern (64 bp):
TTTTGACAAGTCTCGGAAGTTCGTCCAAGAATCAAGAGAGAAACAATTACTCACATAAATAAGT
Found at i:19576 original size:62 final size:62
Alignment explanation
Indices: 19491--19676 Score: 293
Period size: 62 Copynumber: 3.0 Consensus size: 62
19481 ATCGTAAAAG
19491 TTTGAAAAGTTCGG-ATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGAAAAGTTCGGAAT-TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
19553 TTTGACAAGTTTGGAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAGATAAGTT
1 TTTGAAAAGTTCGGAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
19615 TTTGATAAGTTCGGAAGTTCGTCCAAGAACCAAGGGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGAAAAGTTCGGAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
19677 ATTAATTAAA
Statistics
Matches: 114, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
62 112 0.98
63 2 0.02
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (62 bp):
TTTGAAAAGTTCGGAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:19806 original size:341 final size:341
Alignment explanation
Indices: 18939--20292 Score: 1659
Period size: 341 Copynumber: 4.0 Consensus size: 341
18929 AATTTAAAAT
* * * * * * *
18939 GTTCGGAAGTTCGTCTAAGAACAAAGAGAGAAACAGTTCTCACATAAATAAGTTTTTAATTCAAA
1 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAAAA
* * *
19004 GACCAAAA-TAT-TTTTCGAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCAAGG
66 GACCAAAACT-TGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGG
* * * * * * *
19067 AATATTCGACAAAATAGCTCGAAGGAATGGATCGTCATGAAAACCTTCAGGAACCGAAGTTATAA
130 AATGTTCGA-AAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAA
* ** * *
19132 AAGAAATCGTAAAATGTTTTGACAAGTTCAGATGTTCAACCAAGAATCAAGAGACAAACAATT-T
194 AAGAAATCGTAAAA-G-TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * * * * * *
19196 CTACATAAAATAAGTTTTTGACAAGCTCGGAAGTTCGTCTAAGAACTAAGAGAGAAGCAATACTC
257 C-ACGTAAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
*
19261 ACGTAAATAAGTTTTTGACAA
321 ACGTAAATAAGTTTTTGATAA
* * * *
19282 GTTTGGGAAGTTCGTCCAAGATCCAAGAGAGAACCAATTCTCACGTAGA-TAAGTT-TTAAATTC
1 G-TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA-ACTAAGTTATT-AATTA
** * * *
19345 AGCGACCAAAACTTGTTTACAAAAGGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGCAT
63 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCAT
* * * * *
19410 GGAATGTTCAAAAAATTGGTCAAAGGAATGGATCCTCCTGAATACTTTCAGGAACCGAAGTTATA
128 GGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATA
*
19475 AAAGAAATCGTAAAAGTTTGAAAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
193 AAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
*
19540 ACGT-AAATAAGTTTTTGACAAGTTTGGAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
258 ACGTAAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
*
19604 GTAGATAAGTTTTTGATAA
323 GTAAATAAGTTTTTGATAA
*
19623 GTTCGGAAGTTCGTCCAAGAACCAAGGGAGAAACAATTCTCACGTAACTAAGTTATTAATTAAAA
1 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAAAA
* * * * *
19688 GTCCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAGATGGTGTGATTTCTCGAGCATGGA
66 GACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGG-
* * * * * * *
19753 AATGTTTGGAAATTTGCTCAAATGAATGGATCTTCTTGAATACTTTAAGGAACCTAAGTTATAAT
130 AATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAA
* * *
19818 AGAACTCGTGAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAAAGAAACAATTCTCAC
195 AGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
* * * *
19883 GT-AAATAAGTTTTTGACATGTTTGGTAGTTCGTCCAAGAATCGAGAGAGAAACAATTCTCACGT
260 GTAAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
*
19947 AAATAAGTTTTTTATAA
325 AAATAAGTTTTTGATAA
* * * * *
19964 GTTTGAAAGTTTGTCCAATAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACA
1 GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAAAA
* * * * * *
20029 GTCCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAGATGGTGTGTTTTCTCGAGCATGGA
66 GACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGA
* * * * * *
20094 ATGTTTGAAAATTTGCTCAAAGAAATGGATCGTCTTGAATGCTTTAAGGAACCTAAGTTATCAAA
131 ATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAA
* * * * * * * *
20159 GAACTAGTGAAAG--T--CAACTTTGAAAGTTCGTCCAAGAACCAAAAGAGAAACAATTCTCACG
196 GAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
* * * * * *
20220 TAAAATAAGTTTTTGATAAGTTTGAAAGCTCTTCCAAGAACCAAGAGAGAAACAGTTCTCACTTA
261 TAAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
20285 AATAAGTT
326 AATAAGTT
20293 GTTAATTCAA
Statistics
Matches: 893, Mismatches: 108, Indels: 26
0.87 0.11 0.03
Matches are distributed among these distances:
336 42 0.05
337 61 0.07
338 1 0.00
339 1 0.00
340 179 0.20
341 384 0.43
342 43 0.05
343 6 0.01
344 121 0.14
345 55 0.06
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (341 bp):
GTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAAAA
GACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGA
ATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAA
GAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
TAAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
AATAAGTTTTTGATAA
Found at i:19934 original size:62 final size:62
Alignment explanation
Indices: 19832--20017 Score: 246
Period size: 62 Copynumber: 3.0 Consensus size: 62
19822 CTCGTGAAAG
* * * *
19832 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAAAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* ** * *
19894 TTTGACATGTTTGGTAGTTCGTCCAAGAATCGAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
19956 TTTTATAAGTTTGAAAGTTTGTCCAATAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
20018 ATTAATTAAC
Statistics
Matches: 107, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
62 107 1.00
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.30
Consensus pattern (62 bp):
TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:20615 original size:60 final size:61
Alignment explanation
Indices: 20436--20622 Score: 218
Period size: 62 Copynumber: 3.0 Consensus size: 61
20426 ATCGTAAAAG
* * *
20436 TTTGACAAGTTCAGATGTTCGTCCAAGAACCAGGAGAGAAACAATTCTTACATAAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCA-GAGAGAAACAATTCTCACGT-AAATAAGTT
* * * *
20499 TTTGACAAGCTT--GAAGTTCGTCCAACAACTAAGAGAGAAGCAATACTCACGTAAATAAGTT
1 TTTGACAAG-TTCAGAAGTTCGTCCAAGAAC-CAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
20560 TTTGACAAGTTCAAAAATTCGTCCAAGATCCA-AGAGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGAGAGAAACAATTCTCACGTAAATAAGTT
20620 TTT
1 TTT
20623 AATTCAGTGA
Statistics
Matches: 106, Mismatches: 14, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
60 31 0.29
61 19 0.18
62 44 0.42
63 10 0.09
64 2 0.02
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (61 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:20873 original size:62 final size:62
Alignment explanation
Indices: 20774--20962 Score: 254
Period size: 62 Copynumber: 3.0 Consensus size: 62
20764 ATCGTAAAAG
* *
20774 TTTGAAAAGTTCGG-ATGTTCGTCAAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAT-TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * *
20836 TTTGACAAGTTTGGAATTTCGTCCAAGAACTATGAGAGAAGCAATACTCACGTAAATACGTT
1 TTTGACAAGTTCGGAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
20898 TTTGACAAGTCCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
20960 TTT
1 TTT
20963 AATTCAGCGA
Statistics
Matches: 109, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
62 107 0.98
63 2 0.02
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:21114 original size:340 final size:338
Alignment explanation
Indices: 20182--21442 Score: 1500
Period size: 340 Copynumber: 3.7 Consensus size: 338
20172 TCAACTTTGA
* * * * *
20182 AAGTTCGTCCAAGAACCAAAAGAGAAACAATTCTCACGTAAAATAAGTTTTTGATAAGTTTGAAA
1 AAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGT-AAATAAGTTTTTGACAAGTTCGAAA
* * * * * * *
20247 GCTCTTCCAAGAACCAAGAGAGAAACAGTTCTCACTTAAATAAGTTGTTAATTCAAAGGCCAAAA
65 GTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* * *
20312 -TAT-TTTTCAAAATGACAAACTATTTAGACCAAATGAAGCGATTTCCCA-AGCAAGGAAT-GT-
130 CT-TGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAGAGCATGGAATGGTC
** * ** * *
20372 -----TT-TCGAATTAATGGTTTGTCATGAAAACTTTCAAGAACCGAAGTTA-GAAAAGTAATCG
194 AAAAATTCTCGAAGGAATGGATCCTCTTGAATACTTTC-AGAACCGAAGTTATGAAAA--AATCG
*
20430 TAAAAGTTTGACAAGTTCAGATGTTCGTCCAAGAACCAGGAGAGAAACAATTCTTACATAAAATA
256 TAAAAGTTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAAATA
20495 AGTTTTTGACAAGCTT-G
321 AGTTTTTGACAAGCTTGG
* * * *
20512 AAGTTCGTCCAACAACTAAGAGAGAAGCAATACTCACGTAAATAAGTTTTTGACAAGTTCAAAAA
1 AAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTAAATAAGTTTTTGACAAGTTCGAAAG
* **
20577 TTCGTCCAAGATCC-A-AGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCAGTGACCAAAAC
66 TTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAC
* * * * *
20640 TTGTTTACAAAAGGACAAACTGTTTAGACCAAATTATGCGATTT-CCTGAGCATGGAATGTTCAA
131 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAGAGCATGGAATGGTC-A
* ** *
20704 AAAATTTCTCTAAGGAATGGATCCTCCAGAATACTTTCAGGAACCGAAGTTATAAAAGAAATCGT
195 AAAA-TTCTCGAAGGAATGGATCCTCTTGAATACTTTCA-GAACCGAAGTTATGAAA-AAATCGT
* * * * *
20769 AAAAGTTTGAAAAGTTCGGATGTTCGTCAAAGAACCAAGAGAGAAACAATTCTCACGT-AAATAA
257 AAAAGTTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAAATAA
*
20833 GTTTTTGACAAGTTTGG
322 GTTTTTGACAAGCTTGG
* * * * *
20850 AATTTCGTCCAAGAACTATGAGAGAAGCAATACTCACGTAAATACGTTTTTGACAAGTCCGAAAG
1 AAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTAAATAAGTTTTTGACAAGTTCGAAAG
**
20915 TTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCAGCGACCAAAAC
66 TTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAC
* *
20980 TTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGA-TTCCCAGAGCATGGAATGGTCAA
131 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAGAGCATGGAATGGTCAA
* * * *
21044 ACAATTACTCAAAGGAATGGATCCTCTTGAATACTTTCGAGAATCGAACTTATGAAATAAATCAT
196 A-AATT-CTCGAAGGAATGGATCCTCTTGAATACTTTC-AGAACCGAAGTTATGAAA-AAATCGT
** *
21109 AAAAGTTTGACAAGTTCAGATGTTCGTCCAAGAATAAAGAGAGAAACAACTCTTACATAAAATAA
257 AAAAGTTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAAATAA
*
21174 GTTTTTGACAAGCTCGG
322 GTTTTTGACAAGCTTGG
* * * * *
21191 AAGTTCGTCCAGGAATTGAGAGAGAAACAATACTCACATAAATAAGGTTTTGACAAGTTCGAAAG
1 AAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTAAATAAGTTTTTGACAAGTTCGAAAG
* * * *
21256 TTCGTCCAAGATCCAAGAGAGAACCAATTCTCATGTAAATAAGTTTTTAATTGAAAGACCAAATC
66 TTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAC
* * * **
21321 CTGTTTACAAAATGACAAACTATTCAGACCAAATGATGCAATTTCCC-GAGCATGGAAATCTTCG
131 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAGAGCATGG-AATGGTC-
* * * * *
21385 AAAAACTGCCCGAAGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTAT-AAAA
194 AAAAA-TTCTCGAAGGAATGGATCCTCTTGAATACTTTCA-GAACCGAAGTTATGAAAA
21443 CAACTCGT
Statistics
Matches: 798, Mismatches: 104, Indels: 48
0.84 0.11 0.05
Matches are distributed among these distances:
327 43 0.05
328 47 0.06
329 34 0.04
330 34 0.04
337 23 0.03
338 163 0.20
339 11 0.01
340 204 0.26
341 184 0.23
342 51 0.06
343 4 0.01
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (338 bp):
AAGTTCGTCCAAGAACTAAGAGAGAAACAATACTCACGTAAATAAGTTTTTGACAAGTTCGAAAG
TTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAC
TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCAGAGCATGGAATGGTCAA
AAATTCTCGAAGGAATGGATCCTCTTGAATACTTTCAGAACCGAAGTTATGAAAAAATCGTAAAA
GTTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAAATAAGTTT
TTGACAAGCTTGG
Found at i:21275 original size:62 final size:61
Alignment explanation
Indices: 21114--21303 Score: 204
Period size: 62 Copynumber: 3.0 Consensus size: 61
21104 ATCATAAAAG
* *
21114 TTTGACAAGTTC-AGATGTTCGTCCAAGAATAAAGAGAGAAACAACTCTTACATAAAATAAGTT
1 TTTGACAAGTTCGA-AAGTTCGTCCAAGAATAAAGAGAGAAACAA-TCTCACAT-AAATAAGTT
* * * ** *
21177 TTTGACAAGCTCGGAAGTTCGTCCAGGAATTGAGAGAGAAACAATACTCACATAAATAAGGT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAATAAAGAGAGAAACAAT-CTCACATAAATAAGTT
* * **
21239 TTTGACAAGTTCGAAAGTTCGTCCAAG-ATCCAAGAGAGAACCAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAAT-AAAGAGAGAAACAA-TCTCACATAAATAAGTT
21301 TTT
1 TTT
21304 AATTGAAAGA
Statistics
Matches: 106, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
61 2 0.02
62 60 0.57
63 44 0.42
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (61 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAATAAAGAGAGAAACAATCTCACATAAATAAGTT
Done.