genome.fa.s13837.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013837.1 Kokia drynarioides strain JFW-HI SEQ_128865, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  267015

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116--165	23	2.2	23	88	0	73	12	22	24	42	1.87
1092--1130	20	2.1	17	86	13	51	23	5	2	69	1.21
2320--2360	19	2.2	19	86	0	55	12	0	12	75	1.05
2375--2460	24	3.6	24	90	4	131	43	19	15	22	1.88
2400--2494	12	8.0	12	70	2	75	48	18	11	21	1.79
2423--2494	35	2.0	36	89	2	110	50	19	9	20	1.76
2425--2565	23	6.0	24	88	1	101	42	19	15	21	1.89
2463--2527	12	5.5	12	67	10	53	41	23	15	20	1.89
2400--2517	59	2.0	59	84	0	155	45	19	13	21	1.84
2451--2566	23	5.0	23	91	1	160	41	19	16	22	1.90
2460--2584	23	5.4	23	89	0	133	40	18	17	23	1.91
9356--9382	14	1.9	14	100	0	54	74	0	0	25	0.83
14220--14279	18	3.0	20	76	18	63	23	10	1	65	1.32
14241--14279	21	2.0	19	85	14	53	20	10	0	69	1.17
16226--16263	6	6.3	6	93	0	67	0	47	0	52	1.00
16837--16863	2	13.5	2	100	0	54	51	0	0	48	1.00
28307--28336	2	15.0	2	100	0	60	50	0	0	50	1.00
31724--31855	68	1.9	69	82	4	167	19	25	19	34	1.96
51675--51812	26	5.3	26	77	3	125	35	16	19	28	1.94
54162--54251	24	3.8	24	71	12	69	23	18	21	36	1.95
56804--56849	20	2.3	20	84	0	65	45	13	6	34	1.69
65702--66062	182	2.0	183	96	0	661	39	11	12	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69324--69434	55	2.0	55	98	0	213	34	8	23	34	1.84
74866--74923	29	2.0	29	93	0	98	31	13	17	37	1.89
77011--77093	38	2.2	38	82	6	96	50	3	1	44	1.27
85521--85590	30	2.3	30	87	0	95	57	21	17	4	1.57
88637--88681	18	2.5	18	100	0	90	46	40	4	8	1.55
92600--92639	21	1.9	21	84	0	53	37	15	30	17	1.90
96115--96154	21	1.9	21	85	10	55	37	7	5	50	1.53
97130--97308	27	6.6	27	81	2	164	34	22	16	27	1.95
100559--100592	12	2.8	12	86	4	50	14	14	0	70	1.17
100926--100970	14	3.3	13	81	9	54	17	4	2	75	1.07
107162--107210	24	2.1	24	82	14	59	46	0	20	32	1.51
107400--107443	19	2.4	19	88	7	65	20	15	2	61	1.45
107680--107748	21	3.3	19	74	21	66	26	1	2	69	1.11
110463--110614	79	1.9	79	85	2	207	30	23	19	26	1.98
117335--117393	21	2.8	21	76	0	73	30	15	22	32	1.94
124279--124339	32	1.9	32	82	0	77	59	6	3	31	1.39
127210--127237	7	4.0	7	100	0	56	57	14	0	28	1.38
142088--142127	17	2.4	17	82	0	53	52	12	15	20	1.74
146067--146151	45	1.9	44	90	2	134	47	3	7	42	1.48
146867--146912	20	2.2	21	84	7	67	36	0	2	60	1.09
146873--146920	20	2.3	21	85	7	62	33	0	2	64	1.05
149004--149085	28	3.0	27	72	13	78	46	1	0	52	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148972--149069	50	2.0	51	82	11	125	46	0	0	53	1.00
155102--155162	18	3.4	18	100	0	122	47	0	27	24	1.52
155646--155696	21	2.4	21	83	0	66	9	33	23	33	1.88
156780--156809	15	2.0	15	93	0	51	56	3	6	33	1.42
157330--157387	19	2.9	19	71	5	53	20	5	6	67	1.34
159956--160001	24	1.9	24	82	8	58	45	17	10	26	1.81
161869--161904	17	2.1	17	100	0	72	30	11	25	33	1.90
166709--166748	18	2.2	18	86	0	53	15	22	25	37	1.93
175971--176059	6	15.3	6	77	15	98	80	0	17	1	0.77
175972--176055	17	4.9	17	78	16	86	80	0	17	1	0.77
175971--176059	35	2.6	33	84	8	108	80	0	17	1	0.77
175971--176059	23	3.6	23	80	16	99	80	0	17	1	0.77
178691--179445	49	15.4	49	74	3	473	40	19	22	17	1.91
179306--179482	98	1.8	98	81	4	223	40	20	22	16	1.92
180511--180544	6	5.7	6	86	13	52	14	0	2	82	0.79
180538--180598	26	2.5	23	75	17	59	14	8	8	68	1.37
181955--182006	24	2.2	24	89	0	77	19	30	32	17	1.95
187808--187833	13	2.0	13	100	0	52	53	0	15	30	1.42
188915--189121	111	1.9	111	89	0	324	34	11	24	29	1.90
211687--211969	141	2.0	141	92	0	476	38	8	19	33	1.82
212015--212060	21	2.2	21	84	7	58	23	32	17	26	1.97
219875--219905	12	2.6	12	94	0	53	70	0	29	0	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
222148--222247	24	4.1	24	79	7	85	25	19	23	33	1.97
229358--229434	32	2.4	33	77	4	84	62	6	5	25	1.41
232234--232288	24	2.2	24	83	3	65	27	14	10	47	1.78
234378--234961	42	13.9	42	84	6	691	20	18	24	36	1.95
235375--235401	3	9.0	3	100	0	54	33	0	0	66	0.92
236199--236227	3	9.7	3	100	0	58	68	0	31	0	0.89
241697--241846	52	2.9	51	72	9	133	26	32	0	40	1.61
252406--252443	19	2.1	18	90	5	58	65	2	15	15	1.38
255363--255429	25	2.7	25	78	0	62	31	26	14	26	1.95
262602--262656	24	2.2	24	87	3	74	45	10	16	27	1.80

Tables:   1

The End!