genome.fa.s13844.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013844.1 Kokia drynarioides strain JFW-HI SEQ_128872, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  188939

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3473--3516	21	2.1	22	84	16	58	72	0	9	18	1.10
4251--4435	96	1.9	95	79	10	207	36	12	20	30	1.90
4652--4713	28	2.2	28	85	2	79	25	9	30	33	1.88
4665--4776	28	3.8	29	73	16	79	34	6	28	30	1.82
4790--5101	59	5.3	60	81	5	196	31	2	30	34	1.73
4817--5111	30	9.9	29	82	5	333	31	1	30	35	1.68
6852--6935	17	4.9	17	76	4	71	54	5	3	35	1.42
7191--7234	11	4.2	10	77	11	52	25	2	0	72	0.96
9906--9952	20	2.2	21	85	11	60	40	4	2	53	1.32
14483--14541	12	4.8	12	73	19	50	59	3	0	37	1.14
14687--14716	2	15.0	2	100	0	60	50	0	0	50	1.00
15277--15316	20	2.0	20	85	5	53	55	2	10	32	1.47
18349--18396	22	2.2	22	81	7	53	20	2	14	62	1.42
22344--22409	29	2.3	30	84	7	91	22	7	36	33	1.83
22518--22764	29	8.3	30	75	15	196	32	3	29	34	1.74
22468--22764	59	5.0	59	80	7	316	31	4	30	32	1.77
23606--23645	20	2.0	20	85	5	53	55	2	10	32	1.47
26678--26725	22	2.2	22	81	7	53	20	2	14	62	1.42
30673--30738	29	2.3	30	84	7	91	22	7	36	33	1.83
30847--31093	29	8.3	30	75	15	196	32	3	29	34	1.74
30797--31093	59	5.0	59	80	7	316	31	4	30	32	1.77
32927--32973	25	1.9	24	95	4	85	55	0	2	42	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32930--32973	12	3.6	12	84	3	61	56	0	2	40	1.11
33170--33333	23	7.4	23	75	14	148	43	20	23	12	1.85
33176--33250	39	1.9	39	91	0	123	44	20	22	13	1.86
38576--38698	39	3.2	39	83	0	138	23	13	17	44	1.85
38812--39005	73	2.7	73	93	0	325	27	28	17	26	1.97
44867--45128	133	2.0	133	87	3	384	30	18	11	39	1.86
47993--48071	11	7.6	11	68	18	62	53	1	1	44	1.16
47996--48109	16	7.2	16	65	27	57	54	2	1	41	1.25
58712--58736	13	1.9	13	100	0	50	16	8	4	72	1.24
60174--60208	17	2.0	18	94	5	63	74	0	0	25	0.82
66427--66530	40	2.6	41	87	6	149	24	16	25	34	1.95
66427--66554	41	3.1	41	85	4	170	22	17	25	34	1.96
66847--66886	21	1.9	21	89	0	62	20	27	17	35	1.95
67423--67457	3	11.7	3	87	0	52	34	0	31	34	1.58
68273--68358	44	2.0	44	88	0	127	16	11	38	33	1.85
68323--68599	55	5.1	54	76	11	217	17	13	36	32	1.88
68324--68599	108	2.5	110	81	7	305	17	13	36	32	1.89
69184--69289	29	3.7	29	77	9	99	26	18	14	40	1.89
70950--70978	10	2.7	11	89	10	51	37	0	0	62	0.96
71320--71365	24	1.9	24	86	8	67	45	0	4	50	1.21
73270--73558	94	3.1	92	78	7	269	32	10	18	38	1.84
82086--82135	2	25.0	2	95	0	91	50	0	2	48	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82468--82504	6	6.2	6	100	0	74	64	0	35	0	0.94
85784--85935	75	2.0	75	94	2	270	27	13	20	38	1.91
87580--87609	15	1.9	16	93	6	53	60	0	0	40	0.97
88164--88276	61	1.9	59	85	3	154	30	21	5	43	1.74
91371--91427	28	2.0	28	100	0	114	49	3	29	17	1.63
98869--98976	54	2.0	54	96	0	198	48	16	7	27	1.73
106056--106090	18	1.9	18	94	0	61	65	14	5	14	1.44
111202--111262	6	10.3	6	77	10	63	42	0	3	54	1.17
111202--111261	29	2.1	29	87	6	86	41	0	3	55	1.16
111169--111262	17	5.4	17	78	8	100	39	0	6	54	1.26
113151--113405	60	4.2	58	80	11	264	34	27	3	34	1.73
113151--113405	30	8.4	31	81	8	235	34	27	3	34	1.73
113450--113524	30	2.5	30	75	14	75	33	25	4	37	1.75
125854--125888	16	2.1	17	89	10	54	74	2	0	22	0.95
128026--128051	2	13.0	2	100	0	52	50	0	0	50	1.00
130073--130145	33	2.3	33	83	9	89	39	15	5	39	1.70
149446--149510	32	2.0	32	100	0	130	40	15	3	41	1.63
156329--156367	10	3.8	10	83	16	53	69	0	0	30	0.89
156330--156367	21	1.9	21	89	10	62	71	0	0	28	0.87
156593--156617	2	12.5	2	100	0	50	52	0	0	48	1.00
159120--159171	24	2.2	24	92	0	86	53	9	3	32	1.51
167036--167136	30	3.4	29	80	5	112	26	27	31	13	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167236--167260	12	2.1	12	100	0	50	60	0	24	16	1.36
168342--168465	56	2.2	56	80	7	144	39	16	12	31	1.86
169165--169479	139	2.3	139	98	0	612	34	21	18	26	1.96
171057--171133	39	2.0	39	100	0	154	28	7	22	41	1.81
175529--175558	13	2.3	13	94	0	51	76	0	0	23	0.78
175523--175568	23	2.1	21	84	8	56	78	0	0	21	0.76
175517--175575	31	1.9	31	89	6	93	74	0	0	25	0.82
175531--175580	23	2.1	23	85	7	64	72	0	0	28	0.86
175737--175813	31	2.5	31	82	4	93	27	18	12	41	1.87
175679--175868	90	2.1	89	80	4	204	24	15	13	46	1.82
176050--176206	58	2.7	58	85	4	199	45	14	16	23	1.83
176273--176298	12	2.2	12	100	0	52	57	0	0	42	0.98
176665--176720	20	2.7	20	86	8	67	51	0	0	48	1.00
184741--184775	15	2.4	14	85	4	52	71	0	0	28	0.86

Tables:   1

The End!