genome.fa.s13845.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013845.1 Kokia drynarioides strain JFW-HI SEQ_128873, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54051

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
534--751	59	3.7	57	82	9	208	27	4	33	34	1.76
576--751	30	6.0	30	84	7	200	28	3	33	34	1.74
2677--2725	6	8.5	6	76	17	50	53	4	2	40	1.32
2677--2737	17	3.6	16	79	16	61	52	3	1	42	1.27
4252--4469	59	3.7	57	82	9	208	27	4	33	34	1.76
4294--4469	30	6.0	30	84	7	200	28	3	33	34	1.74
6395--6443	6	8.5	6	76	17	50	53	4	2	40	1.32
6395--6455	17	3.6	16	79	16	61	52	3	1	42	1.27
6827--7490	206	3.2	206	89	2	910	18	22	23	35	1.95
19195--19268	28	2.6	28	80	8	69	31	10	28	29	1.91
19282--19548	59	4.4	59	84	9	322	28	2	32	36	1.72
19282--19579	29	9.8	29	79	10	276	28	3	31	36	1.74
19348--19490	68	2.1	68	96	1	261	25	1	34	38	1.65
19378--19461	39	2.2	38	91	4	134	23	1	34	40	1.63
21522--21558	19	2.0	19	94	5	67	54	0	5	40	1.24
22522--22571	20	2.5	20	100	0	100	28	18	28	26	1.98
33052--33103	27	2.0	27	88	3	79	59	5	9	25	1.51
33174--33284	52	2.2	52	95	1	197	51	0	0	48	1.00
40865--40919	28	2.0	28	88	0	83	30	10	30	27	1.91
40877--40935	28	2.1	28	84	3	75	27	10	35	27	1.89
40951--41051	29	3.4	29	72	18	93	37	4	21	35	1.75
41095--41238	29	4.9	30	68	19	90	38	4	25	31	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41037--41229	60	3.3	58	79	12	198	39	4	25	31	1.75
41029--41259	60	3.9	58	76	8	191	39	3	24	31	1.73
40921--41292	59	6.3	60	75	8	237	39	4	24	31	1.74
40921--41288	119	3.1	118	72	12	299	39	4	24	32	1.74
41224--41302	29	2.7	29	79	13	81	41	0	20	37	1.52
42449--42491	12	3.5	13	87	9	63	30	0	0	69	0.88
42450--42491	15	2.8	15	75	13	50	30	0	0	69	0.89
42948--43141	97	2.0	97	82	4	239	38	12	17	31	1.88
43538--43798	30	8.9	29	72	12	140	42	2	20	33	1.66
43380--43759	59	6.4	60	76	10	263	42	3	22	31	1.71
43624--43788	89	1.8	90	88	1	251	43	2	20	34	1.65
45712--45815	17	6.4	17	78	15	96	52	0	2	43	1.22
45729--45798	11	6.2	11	74	12	61	52	0	2	44	1.15
45726--45815	6	15.5	6	73	15	82	55	0	2	42	1.12
45730--45824	29	3.3	29	91	2	140	55	1	2	41	1.18
45747--45824	11	8.0	10	68	24	51	57	1	2	38	1.20
46602--46665	17	3.7	17	79	4	74	50	3	0	46	1.17
46602--46664	6	10.8	6	72	13	51	50	3	0	46	1.17
46650--46695	17	2.8	18	87	9	55	47	2	2	47	1.26
46602--46698	38	2.7	35	82	4	104	51	3	1	44	1.24
51726--51752	13	2.1	13	100	0	54	29	18	14	37	1.91
52887--53529	59	11.0	59	87	1	882	29	4	32	33	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52887--53529	117	5.5	118	89	2	913	29	4	32	33	1.77

Tables:   1

The End!