Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013847.1 Kokia drynarioides strain JFW-HI SEQ_128875, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1967
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35


Found at i:1658 original size:18 final size:17

Alignment explanation


    Indices: 1635--1670  Score: 54
    Period size: 18  Copynumber: 2.1  Consensus size: 17

       1625 AATCAAGATT

                              
       1635 ATTTTTATTTATTCATGC
          1 ATTTTTATTTATT-ATGC

                  *          
       1653 ATTTTTTTTTATTATGC
          1 ATTTTTATTTATTATGC

             
       1670 A
          1 A

       1671 CATATAAAGA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  17    5  0.29
  18   12  0.71

ACGTcount: A:0.22, C:0.08, G:0.06, T:0.64


Consensus pattern (17 bp):   
ATTTTTATTTATTATGC
Done.