genome.fa.s13849.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013849.1 Kokia drynarioides strain JFW-HI SEQ_128877, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46547

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354--896	59	9.4	59	83	8	629	33	33	4	28	1.77
681--782	50	2.0	50	92	3	170	34	34	2	28	1.72
623--826	109	1.9	107	92	2	345	34	33	4	27	1.77
734--899	90	1.8	90	90	2	271	33	30	5	30	1.80
357--897	29	18.7	28	73	16	405	33	33	4	28	1.77
732--926	30	6.6	29	76	14	159	32	31	5	30	1.79
745--932	59	3.2	60	81	10	183	30	32	5	30	1.81
1544--1716	30	5.8	30	78	14	162	32	31	5	30	1.80
1549--1689	31	4.8	30	76	15	134	33	31	4	30	1.79
1541--1716	29	5.9	29	77	13	153	32	32	5	30	1.79
1541--1722	59	3.1	60	81	10	180	31	34	5	29	1.80
751--2321	791	2.0	780	99	0	3025	27	22	11	37	1.89
8782--8825	3	15.0	3	95	4	81	68	0	31	0	0.90
13328--13370	18	2.4	18	80	7	52	48	0	4	46	1.22
14912--15108	60	3.3	60	83	5	240	38	3	25	32	1.73
14937--15119	30	6.1	30	69	11	115	35	4	28	31	1.77
26753--26935	97	1.9	97	81	8	221	38	14	18	29	1.90
27152--27212	29	2.1	29	84	3	79	29	13	26	31	1.93
27167--27332	89	1.9	89	81	10	207	36	5	25	32	1.79
27275--27451	61	2.9	61	82	10	222	37	3	24	33	1.72
27283--27460	29	5.9	30	69	18	120	36	2	26	34	1.71
27258--27492	60	3.9	61	80	9	227	37	3	24	33	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28694--28735	18	2.3	19	80	16	52	35	0	0	64	0.94
29432--29490	17	3.5	17	85	0	73	54	5	3	37	1.39
29418--29493	6	13.2	6	68	12	52	48	3	3	43	1.40
31449--31484	19	1.9	18	88	5	54	30	2	5	61	1.33
31453--31493	10	4.0	11	78	15	52	26	2	7	63	1.33
32269--32303	11	3.1	11	87	4	52	11	0	2	85	0.69
33500--33538	18	2.2	18	85	0	51	25	0	2	71	0.98
37374--37409	18	2.0	18	88	0	54	13	30	36	19	1.91
37590--37660	33	2.3	30	79	13	74	2	28	5	63	1.31
37604--37667	33	1.9	33	81	6	76	4	29	7	57	1.47
37682--37724	6	7.0	6	82	12	52	0	23	0	76	0.78
37688--37726	11	3.4	11	89	10	60	0	23	0	76	0.78
37673--37726	24	2.4	23	85	14	69	0	27	0	72	0.85
37751--37800	21	2.4	21	86	0	73	44	4	36	16	1.66
37748--37813	30	2.2	30	86	0	96	48	3	36	12	1.56
37826--37872	3	16.0	3	78	12	53	0	34	0	65	0.93
37826--37979	15	10.3	15	68	17	63	3	29	1	64	1.22
37916--37992	6	13.0	6	78	8	50	1	27	1	70	1.03
37979--38103	48	2.6	48	78	7	130	8	37	3	51	1.48

Tables:   1

The End!