Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001385.1 Kokia drynarioides strain JFW-HI SEQ_112860, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7165
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36


Found at i:7005 original size:13 final size:13

Alignment explanation


    Indices: 6987--7026  Score: 53
    Period size: 13  Copynumber: 3.0  Consensus size: 13

       6977 GTTCTTAATT

                         
       6987 TTTAATTTTTTAA
          1 TTTAATTTTTTAA

                        *
       7000 TTTAATTTTTTAG
          1 TTTAATTTTTTAA

              *           
       7013 TTAAATTTATTTAA
          1 TTTAATTT-TTTAA

       7027 CATTTTAAAA


Statistics
Matches: 23,  Mismatches: 3, Indels: 1
        0.85            0.11        0.04

Matches are distributed among these distances:
  13   19  0.83
  14    4  0.17

ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65


Consensus pattern (13 bp):   
TTTAATTTTTTAA
Done.