Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013850.1 Kokia drynarioides strain JFW-HI SEQ_128878, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41398
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33
Found at i:432 original size:93 final size:92
Alignment explanation
Indices: 178--433 Score: 262
Period size: 93 Copynumber: 2.7 Consensus size: 92
168 ACAGCTTCGG
* * *
178 TTCCTTAAAGTGTTCAAGACGATCCATTTCTTCGAGTAATTTTTTGAACATAACTTCTA-AAGTT
1 TTCCTT-AAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCTG-A-AT-A-TTCCATAAG-T
** ** *
242 GTCAAACCTTTACGAGTTCTTTTTTAAATTTAT
60 GGGAAACCTTTACGAGTTCTTTTTTAAATACAA
* * * ** * ** *
275 TTCCTTAATGTCTTCAAGATGATCCATTCCTTCGAGTAACTTTCCAAACATTCCATGTGAGGGAA
1 TTCCTTAA-GTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCTGAATATTCCATAAGTGGGAA
340 ACCTTTACGAGTTCTTTTTTAAATACAA
65 ACCTTTACGAGTTCTTTTTTAAATACAA
* *
368 TTCCTTGAAGTGTTCAAGACGATCCATTCCTTTGAGTAATTTTCTGAATATTCCATACGTGGGAA
1 TTCCTT-AAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCTGAATATTCCATAAGTGGGAA
433 A
65 A
434 TTTCATCATT
Statistics
Matches: 129, Mismatches: 27, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
93 85 0.66
94 4 0.03
95 1 0.01
96 3 0.02
97 36 0.28
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.39
Consensus pattern (92 bp):
TTCCTTAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCTGAATATTCCATAAGTGGGAAA
CCTTTACGAGTTCTTTTTTAAATACAA
Found at i:724 original size:216 final size:216
Alignment explanation
Indices: 338--4142 Score: 3969
Period size: 216 Copynumber: 17.6 Consensus size: 216
328 CATGTGAGGG
* * * ** * * *
338 AAACCTTTACGAGTTCTTTTTTAAATACAATTCCTTGAAGTGTTCAAGACGATCCATTCCTTTGA
1 AAACTTTTACGAGTTCTTTTATAAATTCGGTTCCTTAAAGTGTTCAAGACGATCCAATCCTTCGA
* * * * * * *
403 GTAA-TTTTCTGAATATTCCATACGT-GGGAAATTTCATCATTTGGTCTAAATAGTTTTTCATTT
66 GCAATTTTTC-GAACATTACATGC-TAGGGAAGTTGCATCATTTGGTCTAAATAGTTTGTCATTT
* * * * *
466 TTTAAACAAGTTTTGATCTTTGAATTAAAGACTTATTTACGTGCGAATTGTTTCTCTCTTGGTTA
129 TGTAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTG
* *
531 TTGGATGAAGTTCCGAACTTGTC
194 TTGGACGAACTTCCGAACTTGTC
* ** **
554 AAACTTTTACGTGTTCTTTTATAGCTTCGGTTCCTTAAAGTGTTCAAGATTATCCAATCCTTCGA
1 AAACTTTTACGAGTTCTTTTATAAATTCGGTTCCTTAAAGTGTTCAAGACGATCCAATCCTTCGA
* * * * * *
619 ACAATTTTTCAAACATTACATGCTCGGGAAGTTGAATCATTTGGTCTAAAGAGTTTGTCATTTAG
66 GCAATTTTTCGAACATTACATGCTAGGGAAGTTGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * *
684 TAAACAAATTTTGGCCTTTGAATTAAAAACTTATTTACGTGAGAATTTTTTCTCTCTTGGTTGTT
131 TAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTT
*
749 GGACGAACTTCCGGACTTGTC
196 GGACGAACTTCCGAACTTGTC
* * * * * * * * *
770 AAACTATTA-GAAGTTCTTTTTTAAATCCGGTACCTTAAAGTGTCCATGACGATCCATTCCGTAG
1 AAACTTTTACG-AGTTCTTTTATAAATTCGGTTCCTTAAAGTGTTCAAGACGATCCAATCCTTCG
* ** * * * * * * *
834 AGTAATTCCTCGACCATTCCATGCAAGGGAAATCGTATCATTTGGTCTAAATAGTTTTTCATTTT
65 AGCAATTTTTCGAACATTACATGCTAGGGAAGTTGCATCATTTGGTCTAAATAGTTTGTCATTTT
* * * * * *
899 GTAAACAAGTTTTAATCTTTGAATTAACAACTTATTTACATGAGAATTGTGTCTCTCTTGGTTCT
130 GTAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGT
* *
964 TGGACGAACTTCCAAACTTTTC
195 TGGACGAACTTCCGAACTTGTC
* * * * * *
986 AAACTTTTATGAGTTCTTTTATAACTTCGGTTTCTTAAAGTATTCAAGATGATCCAATCTTTCGA
1 AAACTTTTACGAGTTCTTTTATAAATTCGGTTCCTTAAAGTGTTCAAGACGATCCAATCCTTCGA
* * * *
1051 GCAATTTTTCAAACATTACATGCTCGGGAAGTTGAATCATTTGGTCTAAAGAGTTTGTCATTTTG
66 GCAATTTTTCGAACATTACATGCTAGGGAAGTTGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * * *
1116 TAAATAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTATTTATTGGTTGTT
131 TAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTT
* *
1181 GGACGAACTTCTGAAATTGTC
196 GGACGAACTTCCGAACTTGTC
* * * * * **
1202 AAACTTTTACGAGTTCTTTTTTAAATCCGGTTCCTTAAAGTGTTCAACACAATCCATTCCTTTAA
1 AAACTTTTACGAGTTCTTTTATAAATTCGGTTCCTTAAAGTGTTCAAGACGATCCAATCCTTCGA
* * * * ** * * *
1267 GTAATTTTTCAAACGTTCCATGAGAGGGAAATTGCACCATTTGGTCTAAATAGTTTTTCATTTTG
66 GCAATTTTTCGAACATTACATGCTAGGGAAGTTGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * * * *
1332 CAAACAAGTTTTGATCTTTGAATTAAAAACTTATTTATGTGTGAATTGTGTGTCTCTTGGTT-TC
131 TAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGT-
* * *
1396 TAGATGAACTTCCAAACTTGTC
195 TGGACGAACTTCCGAACTTGTC
* * * * * *
1418 AAACTTTTACGAGTTCTTTCATAACTTCAGTTCCATAAAGTATTCAAGACGATCCAATCCATCGA
1 AAACTTTTACGAGTTCTTTTATAAATTCGGTTCCTTAAAGTGTTCAAGACGATCCAATCCTTCGA
* * *
1483 GCAATTTTTCGAACATTACATTCTCGGGAAGTTGCATCATTTGGTCTAAAAAGTTTGTCATTTTG
66 GCAATTTTTCGAACATTACATGCTAGGGAAGTTGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * *
1548 TAAACAAGTTTTGGCCTTTTAATTAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTGTT
131 TAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTT
* * * *
1613 GGATGAACTTTCGAACATGTT
196 GGACGAACTTCCGAACTTGTC
* * * * *
1634 ACACTTTTACGAGTTTTTTTTTAAA-TCTGGTTCCTTAAAGTGTTCAAGACGATCCATTCGTTCG
1 AAACTTTTACGAGTTCTTTTATAAATTC-GGTTCCTTAAAGTGTTCAAGACGATCCAATCCTTCG
* * * ** * ** * *
1698 AGTAATTTTTCAAACATT-CTAAGAGAGGGAAATCACATCATTTGGTTTAAATAGTTTTTCATTT
65 AGCAATTTTTCGAACATTAC-ATGCTAGGGAAGTTGCATCATTTGGTCTAAATAGTTTGTCATTT
* * * * * * * *
1762 CGTATACAAGTTTTGATCTTCGAATTAAAAACTTATTTGCTTGAGAATTGTTTGTCTCTTGGTTC
129 TGTAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTG
1827 TTGGACGAACTTCCGAACTTGTC
194 TTGGACGAACTTCCGAACTTGTC
* * * ** * *
1850 AAACTTTTATGAGTTTTTTTACAGCTTCGGTTCCTTAAATTATTCAAGACGATCCAATCCTTCGA
1 AAACTTTTACGAGTTCTTTTATAAATTCGGTTCCTTAAAGTGTTCAAGACGATCCAATCCTTCGA
* * * * * *
1915 GCAATTTTTCGAACATTTCATGCTTGGGAAGTCGTATCATGTGGTCTAAAAAGTTTGTCATTTTG
66 GCAATTTTTCGAACATTACATGCTAGGGAAGTTGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* ** * *
1980 CAAACAAGTTTTTTCCTTTGAATTAAAAACTTATTTACGTGATAATTGTTTATCTCTTGGTTGTT
131 TAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTT
* **
2045 GGATGAACTTCTAAACTTGTC
196 GGACGAACTTCCGAACTTGTC
* * * * * * * * *
2066 AATCTTTTAAGAGTTCTTTTTTAAATTCAGTTTCTTAAAGTCTTCAAGATGATCCATTCCTTCTA
1 AAACTTTTACGAGTTCTTTTATAAATTCGGTTCCTTAAAGTGTTCAAGACGATCCAATCCTTCGA
* * * * * * * * *
2131 GTAACTTTCCAAACATT-CGATG-TGAGGGAAATCGCATCATTGGGTGTAAATAGTTTCTCATTT
66 GCAATTTTTCGAACATTAC-ATGCT-AGGGAAGTTGCATCATTTGGTCTAAATAGTTTGTCATTT
* * * * * * ** * *
2194 TGCAAATAAGTATTGATCTTTGAATTAAGAACTTATTTACGTGAGAGTTGTGACTCTCTTGTTTC
129 TGTAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTG
* *
2259 TTGGACGAATTTTCGAACTTGTC
194 TTGGACGAACTTCCGAACTTGTC
** ** * * * *
2282 AAACTTTTTGGAGTTCTTTTATAGCTTTGGTTCTTTAAAGTATTCAAGACGATCGAATCCTTCGA
1 AAACTTTTACGAGTTCTTTTATAAATTCGGTTCCTTAAAGTGTTCAAGACGATCCAATCCTTCGA
* * * * * *
2347 GCAATTTTCCTAACATTACATGCTTGGGAAGTCGCA-CAATTTGGTCTTAAA-AGCTTGTTATTT
66 GCAATTTTTCGAACATTACATGCTAGGGAAGTTGCATC-ATTTGGTC-TAAATAGTTTGTCATTT
* * * *
2410 TGTATACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTGTCTTGGTTG
129 TGTAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTG
2475 TTGGACGAACTTCCGAACTTGTC
194 TTGGACGAACTTCCGAACTTGTC
* * * * * *
2498 AAACTTTTACGAGTTCTTTTTTAAATCCAGTTCATTAAAGTGTTCAAGACGATCTATTCCTTCGA
1 AAACTTTTACGAGTTCTTTTATAAATTCGGTTCCTTAAAGTGTTCAAGACGATCCAATCCTTCGA
* * * * * ** * *
2563 GTAAATTTTCGAACATTCCATGCGAGGGAAATCACATCATTTGGACTAAATAGTTTTTCATTTTG
66 GCAATTTTTCGAACATTACATGCTAGGGAAGTTGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * *
2628 TAAACAACTTTTGATCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTGTTGGTTGTT
131 TAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTT
* * *
2693 GGACGAACTTCCAAACTTTTA
196 GGACGAACTTCCGAACTTGTC
* * * * * * *
2714 AAACTTTTACAAGTTCTTTTTTAAATCCGGTTCCTTAAAGTGTCCATGACGATCCATTCCTTAGA
1 AAACTTTTACGAGTTCTTTTATAAATTCGGTTCCTTAAAGTGTTCAAGACGATCCAATCCTTCGA
* * * * * * * *
2779 GTAATTCTCCGACCATTCCATGCGAGGGAAATTTCATCATTTGGTCTAAATAGTTT-TCATTTTG
66 GCAATTTTTCGAACATTACATGCTAGGGAAGTTGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * * *
2843 TAAACAAGTTTTGATCTTTGAATTAAAAACTTAATTACGTGAGAATTGTGTGTCTCTTGGTTTTT
131 TAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTT
* *
2908 GGATGAACTTCCAAACTTGTC
196 GGACGAACTTCCGAACTTGTC
* ** * * * ** * ** *
2929 GAACTTTTACGAGTTCTTACATAACTTCGGTTCCATAGAGTAATCAAGATGATTTAATCCTTTGA
1 AAACTTTTACGAGTTCTTTTATAAATTCGGTTCCTTAAAGTGTTCAAGACGATCCAATCCTTCGA
* * * *
2994 GCAATTTTTCGAACATTACATGCTCGGGAAGTTGCATCTTTTGGCCTAAAAAGTTTGTCATTTTG
66 GCAATTTTTCGAACATTACATGCTAGGGAAGTTGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * *
3059 TAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACATGGGAATTGTTTCTCTCTTGGTTCTT
131 TAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTT
3124 GGACGAACTTCCGAACTTGTC
196 GGACGAACTTCCGAACTTGTC
* ** *
3145 GAACTTTTACGAGTTCTTTTATAGGTTCGGTTCCTTAAAGTAG-TCAAGACGATCCAATCCTTCA
1 AAACTTTTACGAGTTCTTTTATAAATTCGGTTCCTTAAAGT-GTTCAAGACGATCCAATCCTTCG
* ** * * * * * * *
3209 AGCAATTTTTC-AGACATTTCATTATCGGGAAATCGCATCAATTGGTCTAAAAATTTTATCATTT
65 AGCAATTTTTCGA-ACATTACATGCTAGGGAAGTTGCATCATTTGGTCTAAATAGTTTGTCATTT
* * *
3273 TGTAAACAAGTTTTGGCCTTTTAATTAAAAACTTATTTACGTGACAATTGTTTCTCTCTTGGTTG
129 TGTAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTG
* * * *
3338 TTGGGCGAACTTTCGAAATTGTA
194 TTGGACGAACTTCCGAACTTGTC
* * *
3361 AAACTTTTACGAGTTCTTTTTTAAA-TCTGATTCCTTAAAGTGTTCAAGACGATCCATTCCTTCG
1 AAACTTTTACGAGTTCTTTTATAAATTC-GGTTCCTTAAAGTGTTCAAGACGATCCAATCCTTCG
* * * * **
3425 A-CTAA-TTTGCTGAACATTCCATGCGAGGGAAATCACATCATTTGGTCTAAATAGTTT-TCATT
65 AGC-AATTTTTC-GAACATTACATGCTAGGGAAGTTGCATCATTTGGTCTAAATAGTTTGTCATT
* * *
3487 TTGTAAACAAGTTTTGCCCTTTGAATTAAAAACTTATTTACGTGACAATTGTTTCTCTGTTGGTT
128 TTGTAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
* *
3552 GTTGGACGAACTTTCGAACTTATC
193 GTTGGACGAACTTCCGAACTTGTC
** * * *
3576 AAACTTTTATTAGTTCTTTTTTAAATTCAGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGA
1 AAACTTTTACGAGTTCTTTTATAAATTCGGTTCCTTAAAGTGTTCAAGACGATCCAATCCTTCGA
* * * * * ** *
3641 GTAATTTTCCGAACATTCCATGCAAGGGAAATCACATCATTTGGTCTAAATAGTTTTTCATTTTG
66 GCAATTTTTCGAACATTACATGCTAGGGAAGTTGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * * * * * *
3706 TAAAAAATTTTTGATCTTTGAATTAAAAACTTATTTACATGACAATTGTGTCTCTCATGGTTCTT
131 TAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTT
* *
3771 GGACAAACTTCCGAACTTTTC
196 GGACGAACTTCCGAACTTGTC
* * * * * *
3792 AAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGATGATGCAATCCTTCGA
1 AAACTTTTACGAGTTCTTTTATAAATTCGGTTCCTTAAAGTGTTCAAGACGATCCAATCCTTCGA
* * * *
3857 GCAA-TTTTCTGAACATTACATGCTTGGGAAGTCGCATCATTTGATCTAAAAAGTTTGTCATTTT
66 GCAATTTTTC-GAACATTACATGCTAGGGAAGTTGCATCATTTGGTCTAAATAGTTTGTCATTTT
* * * *
3921 GTAAACAAGTTTTGGCCTTTGAATTAAAAATTTATTTACATGAGAATTGTTTCTCTCTTGATTGT
130 GTAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGT
* *
3986 TAGACGAACTTCCGAAATTGTC
195 TGGACGAACTTCCGAACTTGTC
* * * *** * * * * *
4008 CAACTTTTATGAGTTC-TTTGT-AATTCCAACTACTTAGACTGTTCAAGACGATCCATTCCTTCA
1 AAACTTTTACGAGTTCTTTTATAAATT-CGGTTCCTTAAAGTGTTCAAGACGATCCAATCCTTCG
* * * * * * * *
4071 AGTAATTTTTCGAACATTCCATGCGAGGGAAATTGCATCATTTGTTCTAAAAAGTTTTTCGTTTT
65 AGCAATTTTTCGAACATTACATGCTAGGGAAGTTGCATCATTTGGTCTAAATAGTTTGTCATTTT
*
4136 ATAAACA
130 GTAAACA
4143 TGCTTTGATC
Statistics
Matches: 2966, Mismatches: 590, Indels: 67
0.82 0.16 0.02
Matches are distributed among these distances:
214 3 0.00
215 479 0.16
216 2466 0.83
217 18 0.01
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (216 bp):
AAACTTTTACGAGTTCTTTTATAAATTCGGTTCCTTAAAGTGTTCAAGACGATCCAATCCTTCGA
GCAATTTTTCGAACATTACATGCTAGGGAAGTTGCATCATTTGGTCTAAATAGTTTGTCATTTTG
TAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTT
GGACGAACTTCCGAACTTGTC
Found at i:1152 original size:432 final size:432
Alignment explanation
Indices: 338--4142 Score: 4421
Period size: 432 Copynumber: 8.8 Consensus size: 432
328 CATGTGAGGG
* * ** * *
338 AAACCTTTACGAGTTCTTTTTTAAATACAATTCCTTGAAGTGTTCAAGACGATCCATTCCTTTGA
1 AAACTTTTACGAGTTCTTTTTTAAATCCGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGA
* * * **
403 GTAA-TTTTCTGAATATTCCATACGTGGGAAATTTCATCATTTGGTCTAAATAGTTTTTCATTTT
66 GTAATTTTTC-GAACATTCCATGCGAGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTT
* * * *
467 TTAAACAAGTTTTGATCTTTGAATTAAAGACTTATTTACGTGCGAATTGTTTCTCTCTTGGTTAT
130 GTAAACAAGTTTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT
* * * * * *
532 TGGATGAAGTTCCGAACTTGTCAAACTTTTACGTGTTCTTTTATAGCTTCGGTTCCTTAAAGTGT
195 TGGACGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTAT
** * * *
597 TCAAGATTATCCAATCCTTCGAACAATTTTTCAAACATTACATGCTCGGGAAGTTGAATCATTTG
260 TCAAGACGATCCAATCCTTCGAGCAATTTTTCGAACATTACATGCTCGGGAAGTTGCATCATTTG
* * *
662 GTCTAAAGAGTTTGTCATTTAGTAAACAAATTTTGGCCTTTGAATTAAAAACTTATTTACGTGAG
325 GTCTAAAAAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTGAG
* *
727 AATTTTTTCTCTCTTGGTTGTTGGACGAACTTCCGGACTTGTC
390 AATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTC
* * * * * *
770 AAACTATTA-GAAGTTCTTTTTTAAATCCGGTACCTTAAAGTGTCCATGACGATCCATTCCGTAG
1 AAACTTTTACG-AGTTCTTTTTTAAATCCGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCG
** * * *
834 AGTAATTCCTCGACCATTCCATGCAAGGGAAATCGTATCATTTGGTCTAAATAGTTTTTCATTTT
65 AGTAATTTTTCGAACATTCCATGCGAGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTT
* * * *
899 GTAAACAAGTTTTAATCTTTGAATTAACAACTTATTTACATGAGAATTGTGTCTCTCTTGGTTCT
130 GTAAACAAGTTTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT
* * *
964 TGGACGAACTTCCAAACTTTTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTTCTTAAAGTAT
195 TGGACGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTAT
* * * *
1029 TCAAGATGATCCAATCTTTCGAGCAATTTTTCAAACATTACATGCTCGGGAAGTTGAATCATTTG
260 TCAAGACGATCCAATCCTTCGAGCAATTTTTCGAACATTACATGCTCGGGAAGTTGCATCATTTG
* *
1094 GTCTAAAGAGTTTGTCATTTTGTAAATAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTGAG
325 GTCTAAAAAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTGAG
* * * * *
1159 AATTGTTTATTTATTGGTTGTTGGACGAACTTCTGAAATTGTC
390 AATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTC
* * **
1202 AAACTTTTACGAGTTCTTTTTTAAATCCGGTTCCTTAAAGTGTTCAACACAATCCATTCCTTTAA
1 AAACTTTTACGAGTTCTTTTTTAAATCCGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGA
* * * * *
1267 GTAATTTTTCAAACGTTCCATGAGAGGGAAATTGCACCATTTGGTCTAAATAGTTTTTCATTTTG
66 GTAATTTTTCGAACATTCCATGCGAGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTG
* * * * *
1332 CAAACAAGTTTTGATCTTTGAATTAAAAACTTATTTATGTGTGAATTGTGTGTCTCTTGGTT-TC
131 TAAACAAGTTTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-
* * * * * * *
1396 TAGATGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTCATAACTTCAGTTCCATAAAGTAT
195 TGGACGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTAT
* *
1461 TCAAGACGATCCAATCCATCGAGCAATTTTTCGAACATTACATTCTCGGGAAGTTGCATCATTTG
260 TCAAGACGATCCAATCCTTCGAGCAATTTTTCGAACATTACATGCTCGGGAAGTTGCATCATTTG
* *
1526 GTCTAAAAAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTTAATTAAAAACTTATTTACGTGAA
325 GTCTAAAAAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTGAG
* * * *
1591 AATTGTTTCTCTCTTGGTTGTTGGATGAACTTTCGAACATGTT
390 AATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTC
* * * *
1634 ACACTTTTACGAGTTTTTTTTTAAATCTGGTTCCTTAAAGTGTTCAAGACGATCCATTCGTTCGA
1 AAACTTTTACGAGTTCTTTTTTAAATCCGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGA
* * * * * * *
1699 GTAATTTTTCAAACATTCTAAGAGAGGGAAATCACATCATTTGGTTTAAATAGTTTTTCATTTCG
66 GTAATTTTTCGAACATTCCATGCGAGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTG
* * * * *
1764 TATACAAGTTTTGATCTTCGAATTAAAAACTTATTTGCTTGAGAATTGTTTGTCTCTTGGTTCTT
131 TAAACAAGTTTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * * *
1829 GGACGAACTTCCGAACTTGTCAAACTTTTATGAGTTTTTTTACAGCTTCGGTTCCTTAAATTATT
196 GGACGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
* * * * *
1894 CAAGACGATCCAATCCTTCGAGCAATTTTTCGAACATTTCATGCTTGGGAAGTCGTATCATGTGG
261 CAAGACGATCCAATCCTTCGAGCAATTTTTCGAACATTACATGCTCGGGAAGTTGCATCATTTGG
* ** *
1959 TCTAAAAAGTTTGTCATTTTGCAAACAAGTTTTTTCCTTTGAATTAAAAACTTATTTACGTGATA
326 TCTAAAAAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTGAGA
* * **
2024 ATTGTTTATCTCTTGGTTGTTGGATGAACTTCTAAACTTGTC
391 ATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTC
* * * * * * * *
2066 AATCTTTTAAGAGTTCTTTTTTAAATTCAGTTTCTTAAAGTCTTCAAGATGATCCATTCCTTCTA
1 AAACTTTTACGAGTTCTTTTTTAAATCCGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGA
* * * * * * * *
2131 GTAACTTTCCAAACATTCGATGTGAGGGAAATCGCATCATTGGGTGTAAATAGTTTCTCATTTTG
66 GTAATTTTTCGAACATTCCATGCGAGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTG
* * * * * ** *
2196 CAAATAAGTATTGATCTTTGAATTAAGAACTTATTTACGTGAGAGTTGTGACTCTCTTGTTTCTT
131 TAAACAAGTTTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * * * *
2261 GGACGAATTTTCGAACTTGTCAAACTTTT-TGGAGTTCTTTTATAGCTTTGGTTCTTTAAAGTAT
196 GGACGAACTTCCGAACTTGTCAAACTTTTAT-GAGTTCTTTTATAACTTCGGTTCCTTAAAGTAT
* * * * *
2325 TCAAGACGATCGAATCCTTCGAGCAATTTTCCTAACATTACATGCTTGGGAAGTCGCA-CAATTT
260 TCAAGACGATCCAATCCTTCGAGCAATTTTTCGAACATTACATGCTCGGGAAGTTGCATC-ATTT
* * * *
2389 GGTCTTAAAAGCTTGTTATTTTGTATACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTGA
324 GGTCTAAAAAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTGA
* *
2454 GAATTATTTCTGTCTTGGTTGTTGGACGAACTTCCGAACTTGTC
389 GAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTC
* * *
2498 AAACTTTTACGAGTTCTTTTTTAAATCCAGTTCATTAAAGTGTTCAAGACGATCTATTCCTTCGA
1 AAACTTTTACGAGTTCTTTTTTAAATCCGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGA
* * *
2563 GTAAATTTTCGAACATTCCATGCGAGGGAAATCACATCATTTGGACTAAATAGTTTTTCATTTTG
66 GTAATTTTTCGAACATTCCATGCGAGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTG
* * * *
2628 TAAACAACTTTTGATCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTGTTGGTTGTT
131 TAAACAAGTTTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * * ** * * * * *
2693 GGACGAACTTCCAAACTTTTAAAACTTTTACAAGTTCTTTTTTAAATCCGGTTCCTTAAAGTGTC
196 GGACGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
* * * * * * * * ** * *
2758 CATGACGATCCATTCCTTAGAGTAATTCTCCGACCATTCCATGCGAGGGAAATTTCATCATTTGG
261 CAAGACGATCCAATCCTTCGAGCAATTTTTCGAACATTACATGCTCGGGAAGTTGCATCATTTGG
* ** *
2823 TCTAAATAGTTT-TCATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACTTAATTACGTGAGA
326 TCTAAAAAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTGAGA
* * * * *
2887 ATTGTGTGTCTCTTGGTTTTTGGATGAACTTCCAAACTTGTC
391 ATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTC
* *** * * * * ** * ** * *
2929 GAACTTTTACGAGTTCTTACATAACTTCGGTTCCATAGAGTAATCAAGATGATTTAATCCTTTGA
1 AAACTTTTACGAGTTCTTTTTTAAATCCGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGA
* * ** * * * * * *
2994 GCAATTTTTCGAACATTACATGCTCGGGAAGTTGCATCTTTTGGCCTAAAAAGTTTGTCATTTTG
66 GTAATTTTTCGAACATTCCATGCGAGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTG
** * *
3059 TAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACATGGGAATTGTTTCTCTCTTGGTTCTT
131 TAAACAAGTTTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * ** *
3124 GGACGAACTTCCGAACTTGTCGAACTTTTACGAGTTCTTTTATAGGTTCGGTTCCTTAAAGTAGT
196 GGACGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
* * ** * * *
3189 CAAGACGATCCAATCCTTCAAGCAATTTTTC-AGACATTTCATTATCGGGAAATCGCATCAATTG
261 CAAGACGATCCAATCCTTCGAGCAATTTTTCGA-ACATTACATGCTCGGGAAGTTGCATCATTTG
* * * *
3253 GTCTAAAAATTTTATCATTTTGTAAACAAGTTTTGGCCTTTTAATTAAAAACTTATTTACGTGAC
325 GTCTAAAAAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTGAG
* * * *
3318 AATTGTTTCTCTCTTGGTTGTTGGGCGAACTTTCGAAATTGTA
390 AATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTC
* *
3361 AAACTTTTACGAGTTCTTTTTTAAATCTGATTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGA
1 AAACTTTTACGAGTTCTTTTTTAAATCCGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGA
* * *
3426 CTAA-TTTGCTGAACATTCCATGCGAGGGAAATCACATCATTTGGTCTAAATAG-TTTTCATTTT
66 GTAATTTTTC-GAACATTCCATGCGAGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTT
** * * *
3489 GTAAACAAGTTTTGCCCTTTGAATTAAAAACTTATTTACGTGACAATTGTTTCTCTGTTGGTTGT
130 GTAAACAAGTTTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT
* * * * * * *
3554 TGGACGAACTTTCGAACTTATCAAACTTTTATTAGTTCTTTTTTAAATTCAGTTCCTTAAAGTGT
195 TGGACGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTAT
* * * * ** * **
3619 TCAAGACGATCCATTCCTTCGAGTAATTTTCCGAACATTCCATGCAAGGGAAATCACATCATTTG
260 TCAAGACGATCCAATCCTTCGAGCAATTTTTCGAACATTACATGCTCGGGAAGTTGCATCATTTG
* * * * ** * *
3684 GTCTAAATAGTTTTTCATTTTGTAAAAAATTTTTGATCTTTGAATTAAAAACTTATTTACATGAC
325 GTCTAAAAAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTGAG
* * * * *
3749 AATTGTGTCTCTCATGGTTCTTGGACAAACTTCCGAACTTTTC
390 AATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTC
* * * * * * * * *
3792 AAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGATGATGCAATCCTTCGA
1 AAACTTTTACGAGTTCTTTTTTAAATCCGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGA
* * ** * * * *
3857 GCAA-TTTTCTGAACATTACATGCTTGGGAAGTCGCATCATTTGATCTAAAAAGTTTGTCATTTT
66 GTAATTTTTC-GAACATTCCATGCGAGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTT
** * * * *
3921 GTAAACAAGTTTTGGCCTTTGAATTAAAAATTTATTTACATGAGAATTGTTTCTCTCTTGATTGT
130 GTAAACAAGTTTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT
* * * * *** * * * *
3986 TAGACGAACTTCCGAAATTGTCCAACTTTTATGAGTTC-TTTGTAA-TTCCAACTACTTAGACTG
195 TGGACGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTT-CGGTTCCTTAAAGTA
* * * * ** *
4049 TTCAAGACGATCCATTCCTTCAAGTAATTTTTCGAACATTCCATGCGAGGGAAATTGCATCATTT
259 TTCAAGACGATCCAATCCTTCGAGCAATTTTTCGAACATTACATGCTCGGGAAGTTGCATCATTT
* * * *
4114 GTTCTAAAAAGTTTTTCGTTTTATAAACA
324 GGTCTAAAAAGTTTGTCATTTTGTAAACA
4143 TGCTTTGATC
Statistics
Matches: 2858, Mismatches: 500, Indels: 31
0.84 0.15 0.01
Matches are distributed among these distances:
430 3 0.00
431 820 0.29
432 2029 0.71
433 6 0.00
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (432 bp):
AAACTTTTACGAGTTCTTTTTTAAATCCGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGA
GTAATTTTTCGAACATTCCATGCGAGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTG
TAAACAAGTTTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
GGACGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
CAAGACGATCCAATCCTTCGAGCAATTTTTCGAACATTACATGCTCGGGAAGTTGCATCATTTGG
TCTAAAAAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTGAGA
ATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTC
Found at i:4525 original size:216 final size:215
Alignment explanation
Indices: 4151--4691 Score: 748
Period size: 216 Copynumber: 2.5 Consensus size: 215
4141 CATGCTTTGA
* **
4151 TCTTGGTTATTGGACGAACTTCCAAGCTTGTCGAACTTTTACGAG-T-TTTTTTATAGCTCTGGT
1 TCTTGGTTATTGGACGAACTTCCAA-CTTGTCAAACTTTTACGAGTTCTTTTTTA-AATTC-GGT
* * * *
4214 TCCTTAAAGTATTCAAGACGATCCAAACCTTCGAGTAATTTTTCAAGCATTACATTCTCAGGAAG
63 TCCTTAAAGTATTCAAGACGATCCAATCCTTCGAGCAATTTTTCAAGCATTACATGCACAGGAAG
* * *
4279 TCGCATTATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAATAACT
128 TCGCATCATTTGGTATAAAAAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACT
*
4344 TATTTACGTGAGAATTGTTTCTC
193 TATTTACATGAGAATTGTTTCTC
*
4367 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATTCGGTTC
1 TCTTGGTTATTGGACGAACTTCC-AACTTGTCAAACTTTTACGAGTTCTTTTTTAAATTCGGTTC
* * *
4432 CTTAAAGTATTTAAGACGATCCAATCCTTCGAGCAATTTTCTGAA-CATTACATGCACGGGAAGT
65 CTTAAAGTATTCAAGACGATCCAATCCTTCGAGCAATTTT-TCAAGCATTACATGCACAGGAAGT
4496 CGCATCATTTGGTATAAAAAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTT
129 CGCATCATTTGGTATAAAAAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTT
4561 ATTTACATGAGAATTGTTTCTC
194 ATTTACATGAGAATTGTTTCTC
* * * * * * ** *
4583 TCTTGGTTCTTGGACGAGCTTCTATAATTGACAAACTTTTACGAGTTCTTTTATAGTTTCAGTTC
1 TCTTGGTTATTGGACGAACTTCCA-ACTTGTCAAACTTTTACGAGTTCTTTTTTAAATTCGGTTC
* * *
4648 ATTAAAGTATTCAAGACGATCCATTCCTTCTG-GCAGTTTTTCAA
65 CTTAAAGTATTCAAGACGATCCAATCCTTC-GAGCAATTTTTCAA
4692 ACAATCCTTT
Statistics
Matches: 290, Mismatches: 29, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
215 4 0.01
216 269 0.93
217 10 0.03
218 7 0.02
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (215 bp):
TCTTGGTTATTGGACGAACTTCCAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATTCGGTTCC
TTAAAGTATTCAAGACGATCCAATCCTTCGAGCAATTTTTCAAGCATTACATGCACAGGAAGTCG
CATCATTTGGTATAAAAAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTAT
TTACATGAGAATTGTTTCTC
Found at i:4541 original size:21 final size:21
Alignment explanation
Indices: 4500--4539 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
4490 GGAAGTCGCA
4500 TCATTTGGTATAAAAAGTTTG
1 TCATTTGGTATAAAAAGTTTG
* *
4521 TCATTTTGTA-AACAAGTTT
1 TCATTTGGTATAAAAAGTTT
4540 TGGCCTTTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.33, C:0.07, G:0.15, T:0.45
Consensus pattern (21 bp):
TCATTTGGTATAAAAAGTTTG
Found at i:11166 original size:215 final size:215
Alignment explanation
Indices: 10544--11378 Score: 922
Period size: 215 Copynumber: 3.9 Consensus size: 215
10534 CGGGAACTCA
* * * *
10544 CAAGACGATCCATTCCTTCAAGTAATTTTCCAAACATTCCTTGCTCGGGAAATCGCATCATTTGG
1 CAAGACGATCCATTCCTTCAAGCAATTTTTCAAACATTCCATGCTCGGGAAATCGCACCATTT-G
* * * * * * *
10609 TCCAAACAGTTTGTT-GTTTTACAAACAAGTTTTTGTCTGTAAATTAAGAACTTATTTACGTGAG
65 TCTAAATAGTTT-TTCATTTTATAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAG
* * * * * * *
10673 AATTGTTTCTCTCTCGGTTCTTGGACGAACATCCAAACTTGTGAAACTTTTAC-ATTTTCTTTTT
129 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA-GTTCTTTTA
10737 TAACTTCGGTTCCTTAAAGTATT
193 TAACTTCGGTTCCTTAAAGTATT
* ** * ** *
10760 CAAGACGATTCATTCCTTCAAGCAAAATTTCAAACAATCCATGCTCGCTAAATCGCATCACTTTG
1 CAAGACGATCCATTCCTTCAAGCAATTTTTCAAACATTCCATGCTCGGGAAATCGCACCA-TTTG
* * * * *
10825 TCTAAATAGTTTATCATTTTCTAAACAAGTTTTTGCCTCTAAATTAAAAACTTATTTACGTGAGA
65 TCTAAATAGTTTTTCATTTTATAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGA
* * * *
10890 ATTATTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAACTATTACGATTTCTTTTATA
130 ATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATA
* *
10955 ACTTCGGTTCCATAAAGTGTT
195 ACTTCGGTTCCTTAAAGTATT
* * * ** * * *
10976 CAAGACGATCCATTCTTTCTAGTAATTTTTTGATCATTCCATGCTCGGGAAGTCACACCATTTGG
1 CAAGACGATCCATTCCTTCAAGCAATTTTTCAAACATTCCATGCTCGGGAAATCGCACCATTT-G
* * * * *
11041 TCTAAATAATTTTTCATTTT-TAAACAAGTTTTGGTGTTTGAATTAAAAACTTCTTTACATGAGA
65 TCTAAATAGTTTTTCATTTTATAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGA
* * * * *
11105 ATTGTTTTTCTCTTAGTTCATGGACGAACTTTCGAACTTGTCAAAATTTTATGAGTTCTTTTATA
130 ATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATA
*
11170 ACTTCGATTCCTTAAAGTATT
195 ACTTCGGTTCCTTAAAGTATT
** * ** ** ** * *
11191 CAAGGTGATCCATTCCTTCGAGCCTTTTTTTGAACATTCCATGCTCGAAAAATCGCAACAATCTG
1 CAAGACGATCCATTCCTTCAAGCAATTTTTCAAACATTCCATGCTCGGGAAATCGC-ACCATTTG
* * * * *
11256 TTTAAATAGTTTGTCATTTTGTAAAC-AGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGACA
65 TCTAAATAGTTTTTCATTTTATAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGA
* * *
11320 ATTGTTTCTCTCTTGGTTCGTGGATGAACTTTTGAACTTGTCAAACTTTTACGAGTTCT
130 ATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCT
11379 GATATGAGCT
Statistics
Matches: 520, Mismatches: 93, Indels: 13
0.83 0.15 0.02
Matches are distributed among these distances:
215 263 0.51
216 253 0.49
217 4 0.01
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (215 bp):
CAAGACGATCCATTCCTTCAAGCAATTTTTCAAACATTCCATGCTCGGGAAATCGCACCATTTGT
CTAAATAGTTTTTCATTTTATAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAA
TTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
CTTCGGTTCCTTAAAGTATT
Found at i:17628 original size:67 final size:67
Alignment explanation
Indices: 17520--17649 Score: 242
Period size: 67 Copynumber: 1.9 Consensus size: 67
17510 TTTTACCGCT
* *
17520 CAATGTTTTTCAATAGTTCTTGAATCAAACTTACTCAAAATCCTTCAAAACACTTGTGAATCGGC
1 CAATGTTTTTCAAAAGTTCTTGAATCAAACTTACTCAAAATCCGTCAAAACACTTGTGAATCGGC
17585 TG
66 TG
17587 CAATGTTTTTCAAAAGTTCTTGAATCAAACTTACTCAAAATCCGTCAAAACACTTGTGAATCG
1 CAATGTTTTTCAAAAGTTCTTGAATCAAACTTACTCAAAATCCGTCAAAACACTTGTGAATCG
17650 ATTGCAAAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 61 1.00
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.33
Consensus pattern (67 bp):
CAATGTTTTTCAAAAGTTCTTGAATCAAACTTACTCAAAATCCGTCAAAACACTTGTGAATCGGC
TG
Found at i:17860 original size:5 final size:5
Alignment explanation
Indices: 17821--17872 Score: 50
Period size: 5 Copynumber: 10.4 Consensus size: 5
17811 AATATGATAT
* * * ** *
17821 TTTTC ATTTC ATTTC ATTTC TTTTC GCTTC GTTTC TTTTC TTTTC TTTTC
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC
17871 TT
1 TT
17873 CCAAACAGCA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
5 41 1.00
ACGTcount: A:0.06, C:0.21, G:0.04, T:0.69
Consensus pattern (5 bp):
TTTTC
Found at i:18947 original size:15 final size:15
Alignment explanation
Indices: 18929--18957 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
18919 ACATCACTGC
18929 TCGCAACATGAGTGT
1 TCGCAACATGAGTGT
18944 TCGCAACATGAGTG
1 TCGCAACATGAGTG
18958 CTTACAACAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.24
Consensus pattern (15 bp):
TCGCAACATGAGTGT
Found at i:19575 original size:216 final size:217
Alignment explanation
Indices: 19027--20550 Score: 1664
Period size: 216 Copynumber: 7.1 Consensus size: 217
19017 GCTCGCATCA
* * ** * * *
19027 AGTTCTTTTTTAACTT-TAGTTCCTTAAAGTATTCAAGACAATCCATTCGTTTGAGCAATTTTCC
1 AGTTCTTTTATAACTTCGAGTTTGTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCC
* * * * * *
19091 AAACATTGCATGCTTGGGAAGTCGCATCATTTGGTCTAAATAGTTTGTCGTTTTTTAAACAAGTT
66 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
** * * * *
19156 TTGGTCTTTGAATTAAAAACTTCCTTACGTGAGAATTGTTTCCCTCTTGGTTCTTAGATGAACTT
131 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAACTT
* *
19221 TTCAATTTGT-AAACTTTTACG
196 TTGAACTTGTCAAACTTTTACG
* * *
19242 AGCTCTTTTAAAACTTC-AGTTTCGTT-AAGTATTCAAGATGATCCATT-CTTCGAGCAATTTTC
1 AGTTCTTTTATAACTTCGAGTTT-GTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC
* * *
19304 CGAACATTCCATGCTCGGGAAGTCGCATCATTTGGTCTAAATAGTTTGTTATTTTGTAAAAAAGT
65 CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
* * * * *
19369 TTTGGGCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGAATGAACT
130 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAACT
* *
19434 TTTGAACTTGTTAAACTGTTACG
195 TTTGAACTTGTCAAACTTTTACG
* * *
19457 AGTTCTTTTATAACTTCGA-TTTGTTAAAGTATTCAAGACAATCCATTCATTCGAGCAATTTTTC
1 AGTTCTTTTATAACTTCGAGTTTGTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCC
* ** * *
19521 GAACATTTCACACTCGGGAAATCGCATCATTAGGTCTAAATAGTTTGTTATTTTGTAAACAAGTT
66 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
* * * *
19586 TTGGTCTTTAAATTAAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGCTTTTTGGACGAACT
131 TTGGTCTTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAACT
** *
19651 TCCGAACTTGTCAAACTTTTACA
195 TTTGAACTTGTCAAACTTTTACG
* ** * * * * *
19674 AGTTCTTTTATAACTT-TAGTTCCTTAAAATGTTCAAGACGATCCATTCCTTCCAGCTATATTCC
1 AGTTCTTTTATAACTTCGAGTTTGTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCC
* * ** * *
19738 AAACAATCCATGCTCGGGAAATAACATGATTTGGTCTAAA-ATGTTTGTCATTTTGTAAACTAGT
66 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA-GTTTGTCATTTTGTAAACAAGT
* * * * * *
19802 TTTGGTCTTTGAATTATAAACTTATTCATGTGAGAATTATTTCTCTTTTTATTCTTGGACGAACT
130 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAACT
* * * * *
19867 TCTGAACATGCCATACATTTACG
195 TTTGAACTTGTCAAACTTTTACG
* * * * * * *
19890 AGTTTTTTTATAACTTCGA--CTGCTGAGAGTATACAAGATGATCCATTCCGTT-GACCAATTTT
1 AGTTCTTTTATAACTTCGAGTTTG-TTAAAGTATTCAAGACGATCCATTCC-TTCGAGCAATTTT
* * ** *
19952 TCGAACATTCCATGCTCGAGAAATCGCATCATTTGACCTAAATAGTTTGTCATTTTGTAAACAGG
64 CCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* * *
20017 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTTTGTC-TCAGTTCTTGGACGAA
129 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGA-TTCTTGGACGAA
*
20081 CTTTCGAACTTGTCAAACTTTTACG
193 CTTTTGAACTTGTCAAACTTTTACG
* ** * * * *
20106 AGTTCCTTTATAACTTC-AGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCCAACAATATT-C
1 AGTTCTTTTATAACTTCGAGTTTGTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCC
* * ** * *
20169 GAACAATCCATGCTCAGGAAATAACATGATTTGGTCTAAA-ATGTTTGTCATTTTGTAAACTAGT
66 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA-GTTTGTCATTTTGTAAACAAGT
* * * * * * * *
20233 TTTGGACTTTGAATTATAAACTTATTTACATGAGAATTATTTCACTTTTTATTCTTGGACAAACT
130 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAACT
* * * * *
20298 TCTGAACTCGCCATACATTTACG
195 TTTGAACTTGTCAAACTTTTACG
* * * *
20321 AGTTCTTTTATAACTTCG-GCTCTTG--AGAGTATACAAGACGATCCATTCCGTCGACCAA-TTT
1 AGTTCTTTTATAACTTCGAG-T-TTGTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * **
20382 CCTGAGCATTCCATGCTCGAGAAATCGCATCATTTGACCTAAATAGTTTGTCATTTTGTAAACAA
64 CC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
*
20447 GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTCGATTCTTGGACGAA
128 GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAA
* *
20512 CTTTCGAACTTGTCAAACTTTTATG
193 CTTTTGAACTTGTCAAACTTTTACG
*
20537 AGTTTTTTTTATAA
1 AG-TTCTTTTATAA
20551 ATTTGGTTCC
Statistics
Matches: 1078, Mismatches: 205, Indels: 50
0.81 0.15 0.04
Matches are distributed among these distances:
214 144 0.13
215 255 0.24
216 485 0.45
217 194 0.18
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (217 bp):
AGTTCTTTTATAACTTCGAGTTTGTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCC
GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAACTT
TTGAACTTGTCAAACTTTTACG
Found at i:20283 original size:431 final size:430
Alignment explanation
Indices: 19054--20567 Score: 1925
Period size: 431 Copynumber: 3.5 Consensus size: 430
19044 AGTTCCTTAA
* * * * * * * *
19054 AGTATTCAAGACAATCCATTCGTTTGAGCAATTTTCCAAACATTGCATGCTTGGGAAGTCGCATC
1 AGTATACAAGACGATCCATTCG-TTGACCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATC
** * * **
19119 ATTTGGTCTAAATAGTTTGTCGTTTTTTAAACAAGTTTTGGTCTTTGAATTAAAAACTTCCTTAC
65 ATTTGACCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC
* * * * * * *
19184 GTGAGAATTGTTTCCCTCTTGGTTCTTAGATGAACTTTTC-AATTTGT-AAACTTTTACGAGCTC
130 GTGAGAATTGTTTCTCTCTCGATTCTTGGACGAAC-TTTCGAACTTGTCAAACTTTTACGAGTTC
* * * * * *
19247 TTTTAAAACTTCAGTTTCGTT-AAGTATTCAAGATGATCCATT-CTTCGAGCAATTTTCCGAACA
194 TTTTATAACTTCAG-TTCCTTAAAGTGTTCAAGACGATCCATTCCTTCCAGCAATATTCCGAACA
* * ** * * **
19310 TTCCATGCTCGGGAAGTCGCATCATTTGGTCT-AAATAGTTTGTTATTTTGTAAAAAAGTTTTGG
258 ATCCATGCTCGGGAAATAACATGATTTGGTCTAAAAT-GTTTGTCATTTTGTAAACTAGTTTTGG
* * * * ** * * *
19374 GCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGAATGAACTTTTGA
322 ACTTTGAATTATAAACTTATTTATGTGAGAATTATTTCTCTTTTTATTCTTGGACGAACTTCTGA
** * * * *
19439 ACTTGTTAAAC-TGTTACGAGTTCTTTTATAACTTCGATTTG-TTAA
387 AC-TGCCATACAT-TTACGAGTTCTTTTATAACTTCGA-CTGCTGAG
* * * * * * ** *
19484 AGTATTCAAGACAATCCATTCATTCGAGCAATTTTTCGAACATTTCACACTCGGGAAATCGCATC
1 AGTATACAAGACGATCCATTCGTT-GACCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATC
* ** * *
19549 ATTAGGTCTAAATAGTTTGTTATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAAACTTATTTA
65 ATTTGACCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT-AAAAACTTATTTA
* * * * * *
19614 CGTGAAAATTGTTTCTCTCTTGCTTTTTGGACGAACTTCCGAACTTGTCAAACTTTTACAAGTTC
129 CGTGAGAATTGTTTCTCTCTCGATTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTC
* * * *
19679 TTTTATAACTTTAGTTCCTTAAAATGTTCAAGACGATCCATTCCTTCCAGCTATATTCCAAACAA
194 TTTTATAACTTCAGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCCAGCAATATTCCGAACAA
*
19744 TCCATGCTCGGGAAATAACATGATTTGGTCTAAAATGTTTGTCATTTTGTAAACTAGTTTTGGTC
259 TCCATGCTCGGGAAATAACATGATTTGGTCTAAAATGTTTGTCATTTTGTAAACTAGTTTTGGAC
*
19809 TTTGAATTATAAACTTATTCATGTGAGAATTATTTCTCTTTTTATTCTTGGACGAACTTCTGAAC
324 TTTGAATTATAAACTTATTTATGTGAGAATTATTTCTCTTTTTATTCTTGGACGAACTTCTGAAC
*
19874 ATGCCATACATTTACGAGTTTTTTTATAACTTCGACTGCTGAG
389 -TGCCATACATTTACGAGTTCTTTTATAACTTCGACTGCTGAG
* *
19917 AGTATACAAGATGATCCATTCCGTTGACCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATC
1 AGTATACAAGACGATCCATT-CGTTGACCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATC
*
19982 ATTTGACCTAAATAGTTTGTCATTTTGTAAACAGGTTTTGGTCTTTGAATTAAAAACTTATTTAC
65 ATTTGACCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC
* *
20047 GTGAGAATTGTTTTTGTCTC-AGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTC
130 GTGAGAATTGTTTCTCTCTCGA-TTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTC
* *
20111 CTTTATAACTTCAGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCCAACAATATT-CGAACAA
194 TTTTATAACTTCAGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCCAGCAATATTCCGAACAA
*
20175 TCCATGCTCAGGAAATAACATGATTTGGTCTAAAATGTTTGTCATTTTGTAAACTAGTTTTGGAC
259 TCCATGCTCGGGAAATAACATGATTTGGTCTAAAATGTTTGTCATTTTGTAAACTAGTTTTGGAC
** * *
20240 TTTGAATTATAAACTTATTTACATGAGAATTATTTCACTTTTTATTCTTGGACAAACTTCTGAAC
324 TTTGAATTATAAACTTATTTATGTGAGAATTATTTCTCTTTTTATTCTTGGACGAACTTCTGAAC
*
20305 TCGCCATACATTTACGAGTTCTTTTATAACTTCGGCT-CTTGAG
389 T-GCCATACATTTACGAGTTCTTTTATAACTTCGACTGC-TGAG
* *
20348 AGTATACAAGACGATCCATTCCGTCGACCAA-TTTCCTGAGCATTCCATGCTCGAGAAATCGCAT
1 AGTATACAAGACGATCCATT-CGTTGACCAATTTTCC-GAACATTCCATGCTCGAGAAATCGCAT
20412 CATTTGACCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTA
64 CATTTGACCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTA
*
20477 CGTGAGAATTGTTTCTCTCTCGATTCTTGGACGAACTTTCGAACTTGTCAAACTTTTATGAGTTT
129 CGTGAGAATTGTTTCTCTCTCGATTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAG-TT
* * **
20542 TTTTTATAAATTTGGTTCCTTAAAGT
193 CTTTTATAACTTCAGTTCCTTAAAGT
20568 ATTGATATGG
Statistics
Matches: 956, Mismatches: 112, Indels: 30
0.87 0.10 0.03
Matches are distributed among these distances:
429 2 0.00
430 109 0.11
431 394 0.41
432 191 0.20
433 252 0.26
434 8 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (430 bp):
AGTATACAAGACGATCCATTCGTTGACCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCA
TTTGACCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
TGAGAATTGTTTCTCTCTCGATTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTT
TTATAACTTCAGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCCAGCAATATTCCGAACAATC
CATGCTCGGGAAATAACATGATTTGGTCTAAAATGTTTGTCATTTTGTAAACTAGTTTTGGACTT
TGAATTATAAACTTATTTATGTGAGAATTATTTCTCTTTTTATTCTTGGACGAACTTCTGAACTG
CCATACATTTACGAGTTCTTTTATAACTTCGACTGCTGAG
Found at i:21081 original size:19 final size:19
Alignment explanation
Indices: 21037--21083 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
21027 GATAAAATCC
*
21037 TAAGAAGCCTCGGAAACAA
1 TAAGAATCCTCGGAAACAA
*
21056 TAAGAATCCTTGGAAACAA
1 TAAGAATCCTCGGAAACAA
21075 TAAGAATCC
1 TAAGAATCC
21084 ATAACTCCCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.47, C:0.19, G:0.17, T:0.17
Consensus pattern (19 bp):
TAAGAATCCTCGGAAACAA
Found at i:28758 original size:195 final size:196
Alignment explanation
Indices: 28445--28813 Score: 487
Period size: 195 Copynumber: 1.9 Consensus size: 196
28435 CAAAATGACA
** * *
28445 AACTATTTAGACCAAATGATGCGACTTCCCTAGCATGGAATGTTTGAAAAATTGCTCGAAAGACT
1 AACTATTTAGAAAAAATGATGCGACTT-CCTAGCATGAAATGTTCGAAAAATTGCTCGAAAGACT
* * ** * *
28510 GGATCATCTTGAATACTTTAAGGAACTTAAGTTATAAAAGAACTCGCAAAAGTTTGACAAGTT-A
65 GGATCATCTTAAATACTTTAAGAAACAAAAGTTATAAAAGAACTCGAAAAAGTTTAACAAGTTCA
* * *
28574 GAAAGTTC-GTCCAAGAACCAAGGGAGAAACAATTATCATGTAAATTAAAACTTGTTCATAAAAT
130 G-AAGTTCAG-CCAAGAACCAAGAGAAAAACAATTATCACGTAAATTAAAACTTGTTCATAAAAT
28638 GGTG
193 GGTG
* *
28642 AACTATTTAGAAAAAATGATGCGATCTT-CTGAGCATGAAATGTTCG-AAAATTGCTCGAAGGAT
1 AACTATTTAGAAAAAATGATGCGA-CTTCCT-AGCATGAAATGTTCGAAAAATTGCTCGAAAGAC
* * *
28705 TGGTTGA-CTTAAATACTTTAAGAAACAAAATTTATAAAAGAACTCGAAAAAGTTTAACAAGTTC
64 TGGATCATCTTAAATACTTTAAGAAACAAAAGTTATAAAAGAACTCGAAAAAGTTTAACAAGTTC
*
28769 AGAAGTTCAGCCAAGAACCAAGAGAAAAACAATTTTCACGTAAAT
129 AGAAGTTCAGCCAAGAACCAAGAGAAAAACAATTATCACGTAAAT
28814 AAGTTTTTAA
Statistics
Matches: 149, Mismatches: 19, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
195 86 0.58
196 25 0.17
197 35 0.23
198 3 0.02
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.27
Consensus pattern (196 bp):
AACTATTTAGAAAAAATGATGCGACTTCCTAGCATGAAATGTTCGAAAAATTGCTCGAAAGACTG
GATCATCTTAAATACTTTAAGAAACAAAAGTTATAAAAGAACTCGAAAAAGTTTAACAAGTTCAG
AAGTTCAGCCAAGAACCAAGAGAAAAACAATTATCACGTAAATTAAAACTTGTTCATAAAATGGT
G
Found at i:29306 original size:216 final size:216
Alignment explanation
Indices: 28642--33452 Score: 4348
Period size: 216 Copynumber: 22.6 Consensus size: 216
28632 TAAAATGGTG
** ** * *
28642 AACTATTTAGAAAAAATGATGCGATCTT-CTGAGCATGAAATGTTCG-AAAATTGCTCGAAGGAT
1 AACTATTTAGACCAAATGATGCGAT-TTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAA
* * * * ** * * *
28705 TGG-TTGACTTAAATACTTTAAGAAACAAAATTTATAAAAGAACTCGAAAAAGTTTAACAAGT-T
65 TGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAA-TAT
* * * *
28768 CAGAAGTTCAGCCAAGAACCAAGAGAAAAACAATTTTCACGTAAATAAGTTTTTAATTCAAAGAC
129 CGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* *
28833 AAAAACTTGTTTACAAAATGAGA
194 CAAAACTTGTTTACAAAATGACA
* * * * * *
28856 AACTATTTAGACCAAATTATGTGATTTACCGAGCATGGAATGTTCGAAAAATTGGTCGACGGAAT
1 AACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT
* * * * * * * *
28921 GGATCATCTT-ATATACTCTCAGGAACCGAAGTTGTAAAAGAACTCATAAATGTTTGCCAAGATC
66 GGATCGTCTTGA-ATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAATATC
* * * * *
28985 AGAAGTTCATCCAAGAA-TAA-AGAGAAACAGTTCTCATGTAAATAAGTTTATAATTCAAAGACC
130 GGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* *
29048 AAAACTTATTTACGAAATGACA
195 AAAACTTGTTTACAAAATGACA
* ** *** * * * *
29070 AACTTTTTAGACCAAATGATGTTATTTCTTGAGCTTGGATTGTTCAAAAAATTGCTGGAAGGAAT
1 AACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT
* * * * * *
29135 GAATCATCATGAAAACTTTAAGGAACCGAAGTTATAAAAGAAGTCGTAAAAGTTTGACAATATTG
66 GGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAATATCG
* * * *
29200 GAAGTTCATCCAAGAAGCAAGAGAGAATCAATTTTCACATAAATAAGTTTTTAATTCAAAGACCA
131 GAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
*
29265 AAACTTGTTTACAAAATAACA
196 AAACTTGTTTACAAAATGACA
* * *
29286 AACTATTTAGACCTAATGATGTGATTTCCCCAAGCATGGAATGTTCGAAAAATTGCTCAAAGGAA
1 AACTATTTAGACCAAATGATGCGATTT-CCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAA
* * * * *
29351 TAGATTC-TCTTGAATACTGTAATGAACCGAAGTTATAAAAGAACTCGTAATAGTTTGACAGGT-
65 TGGA-TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACA-ATA
** *
29414 TCAAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAG-
128 TCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* *
29478 CCTAAAACTTTTTTACAAAATAACA
193 CC-AAAACTTGTTTACAAAATGACA
* *
29503 AACTATTTAGACCAAATGATGCGACTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAA-AAAT
1 AACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT
* * * * * * *
29567 GGATCGTCTTGAATAC-TTAACAGAATCGAAGTTTTAAAAGAATTTGCAAAAGTTTG-CAAAATC
66 GGATCGTCTTGAATACTTTAA-GGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAATATC
* * * *
29630 GAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACATAAAAAAGTTTTTAATTCAAAGACC
130 GGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
*
29695 AAAACTTGTTTAAAAAATGACA
195 AAAACTTGTTTACAAAATGACA
* * * * * * * *
29717 AATTATTTAGACCAAATGATGTGACTTCCTAAGCATGGAATGTTTGGAAATTTGCTCGAAAGAAT
1 AACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT
* * * *
29782 GGATCGTCTTGAATACTTTAAGGAACCAAAGTTAAAAAAGAACTTGTAAAAGTTTGACAA-GTCG
66 GGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAATATCG
* * * *
29846 GAAGTTCATCCACGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTAAATCAAACACCA
131 GAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
* * * *
29911 AAACTAGTTCATAAAATGTCA
196 AAACTTGTTTACAAAATGACA
* * * * *** * *
29932 AACTATTTAGA-TAGATTGTTGTGATTTTTAAAGCATGGGATGTTCAAAAAATTGCTCGAAGGAA
1 AACTATTTAGACCA-AATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAA
* * *
29996 TGGATCG-CTTATAATACTTTAAGGAACCAAAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGT-
65 TGGATCGTCTT-GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAA-TA
* * * * * * * *
30059 TTGAAATTTCATCCATGAACCAAAAGA-AAAAAATTCTCACGCAAAGAAGTTTTTAATTCAAAGA
128 TCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* *
30123 CCAAAACTTGTTTAAAAAATGAAA
193 CCAAAACTTGTTTACAAAATGACA
* * * * * ** *
30147 AATTATTTAGACCAACTGGTGTGACTTCCCAAGCATGGAAT-TGTAAAAAAATTGCTTGAAGGAA
1 AACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGT-TCGAAAAATTGCTCGAAGGAA
* * * *
30211 TGGATCGTCTTGAACACTTTATGGAACCGAAGTTATAAAAGAACTCGTAATAGTTTGACTAGT-T
65 TGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAC-AATAT
* *
30275 TGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
129 CGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * *
30340 AAAAACCTGTTTACAAAGTGACA
194 CAAAACTTGTTTACAAAATGACA
* * * * * * * *
30363 AACTATTTAGTCCAAATGATGCAATTT-ACAGAGCATGGAATGTTTGGAAAACTGATC-AGCGGA
1 AACTATTTAGACCAAATGATGCGATTTCCCA-AGCATGGAATGTTCGAAAAATTGCTCGA-AGGA
* * * * *
30426 ATAGATCGTCTTGTATACTGTCAA-GAACCGAAGTTATAAAAAAACTCGTAAATA-TTTGGCAAG
64 ATGGATCGTCTTGAATACT-TTAAGGAACCGAAGTTATAAAAGAACTCGTAAA-AGTTTGACAA-
* * * * * * *
30489 T-TCAGAAGTTCGTCCAAGAA-TAA-AGAGAAATAATTCTCAAGTATATAAGTTTATAATTCAAA
126 TATCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
30551 GACCAAAACTTGTTTA-AAAATGACA
191 GACCAAAACTTGTTTACAAAATGACA
* * ** * * * *
30576 AACTTTTTAGACCAAAGGATGTTATTTCCCGAGCATTGATTGTTCGAAAAATTGCTGGAAGGAAT
1 AACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT
* * *
30641 GGATCGTCTTGAACACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGATCG
66 GGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAATATCG
* * * * * * **
30706 AAAATTCATCCAAGAAGCAAGAGAGAATCAATTTTCTCGTAAATAAAATTTTAATTCAAAGACCA
131 GAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
*
30771 AAACTTGTTTACAAAATAACA
196 AAACTTGTTTACAAAATGACA
* * * * * * * *
30792 AACTATATAGACCTAATGATGCAATTTCCCGAGCATGGAATGTT-GAGAAAACTACTCGTAGGAG
1 AACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAA
* * * *
30856 TGGATTC-TCTTGAATACTTTGACGAACCAAAG-TA-ATAA-AA---G---AAG-TT--C---A-
65 TGGA-TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAATAT
* *
30904 --GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCTCGTAAATAAGTTTTTAATTCAAA-AC
129 CGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-
* * *
30966 CCAAAACTTTTTTACAAAATAACG
193 CCAAAACTTGTTTACAAAATGACA
* * *
30990 AACTATTTAGACC-AA--ATG-GACTTCCCAAGCATGGAATGTTTGAAAAATTGCTTGAA-GAAT
1 AACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT
* * * * * *
31050 GAATCGTCTTGAATAC-TTAATGAAACCGAAGTTTTAAAACAACTTGTAAAAGTCTG-CAA-ATT
66 GGATCGTCTTGAATACTTTAA-GGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAATA-T
* * * *
31112 TGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCATGTAAAGAAGTTTTTAATTCAAAGAC
129 CGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* *
31177 CAAAACTTATTGA-AGAAATGAC-
194 CAAAACTTGTTTACA-AAATGACA
* ** * * *
31199 -ACTATTTAGAACAAATGACACGACTTCCCAAACATGGAATGTTCGAAAAATTGCTCGAAAGAAT
1 AACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT
* * * *
31263 GGATCATCTTGAATACTTTAAGGAACCAAAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGT-TT
66 GGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAA-TATC
* * * * *
31327 GAAAGTT-AGTCCACGAACCAAGAGAGAAACAATTCTCACGTAAATAACTTTTTAATCCAAAGGC
130 GGAAGTTCA-TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
31391 CAAAACTTGTTTACAAAATGACA
194 CAAAACTTGTTTACAAAATGACA
* * **** *
31414 AACTGTTTAGA-CAGATTGATGCGATTTTTTGAGCATGGAATGTTCGAAAAATTGCTCGAA-GAG
1 AACTATTTAGACCA-AATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAA
* * * * * * * *
31477 TGGATCATCTTGAATAC-TTAACAGAAGCGAAGTTTTCAAAGAATTTGTAAAAGTTT-TCAA-AT
65 TGGATCGTCTTGAATACTTTAA-GGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAATA-
* * * * * * *
31539 TC-TAGAGATCATACAAGAACCAAGAGAGAAACAATTATCATGTAAAGAAGTTTGTAA-TCAAAG
128 TCGGA-AGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* *
31602 ACCAAAACTTGTTTACAAAATAAAA
192 ACCAAAACTTGTTTACAAAATGACA
* * * * * *
31627 AACTATTTAGACCTAATGATGCGATTTCTCTAGCGTGAAATGTTTG-AAAATTGCTCGAAGGAAT
1 AACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT
* * * * * * *
31691 GGATCGTCTTGAACACTTTATGGAACCGAAGTTATAAAAGGACTTGTAACAGTTTGACTAGT-TT
66 GGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAC-AATATC
* * * ** * * * **
31755 GGATGTTCATCGAAGAACCAAGAGAGGAGTAATTCTCACATAAATAAGTTTTCAATTCAAACATA
130 GGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* *
31820 AAAACCTATTTACAAAATGACA
195 AAAACTTGTTTACAAAATGACA
* * * * * * *
31842 AACTATTTAGTCCAAATGATGCAATTTACCAAGCATGGAATGTT-TATAAAATTGATTGACGGAA
1 AACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAA
** * *
31906 TGGATCGTCTTCTATACTATT-AGGAACCGAAGTTATAAAAGAACTCGTAAATGTTTGGCAAGT-
65 TGGATCGTCTTGAATACT-TTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAA-TA
* * * *
31969 TCAGAAGTTCATCCAAGAA-TAA-AGAGAAACAATTCTCACGTAAATAAGTTTATAATTGAAAGA
128 TCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
32032 CCAAAACTTGTTT--AAAATGA-A
193 CCAAAACTTGTTTACAAAATGACA
* * * ** * *
32053 AATCTTTTTAGACAAAATGAAGTTATTT-CCAGAGCATGGATTGTTCGAAAAATTACT-GTAAGG
1 AA-CTATTTAGACCAAATGATGCGATTTCCCA-AGCATGGAATGTTCGAAAAATTGCTCG-AAGG
* * * * *
32116 AATGGATCATCTTGAAAACTTTAAGGAACCGAAGTTATAAAAG---T-TTCAAAG-AT--C-A-A
63 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAATA
* * * *
32172 ----AAGTTCCTCCAAGAAGCAAGAGAGAATCAATTTTCACGTAAATAAGTTTTTAATTCAAAGA
128 TCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* *
32233 CCAAAATTTGTTTACAAAATAACA
193 CCAAAACTTGTTTACAAAATGACA
* * * *** * * * *
32257 AACTATTTTGACCTAATGATACGATTTCTTGAGCATGGAATGTTCAAAAAATTCCTTGAAGAAAT
1 AACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT
* * *
32322 GGATTC-TCTTGATTACTTTAACGAACCAAAGTTATAAAAGAACTCGTAACAA-TTTGACAAGT-
66 GGA-TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAA-AAGTTTGACAA-TA
* * * *
32384 TCAGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGC
128 TCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* * *
32449 CCGAAACATT-TTTACAAAATAATA
193 CCAAAAC-TTGTTTACAAAATGACA
* ** * *
32473 AACTATTTAGACCAAATGACGCGACATCCCAAGCATGGGATGTTCGAAAAATTGTTCGAA-GAAT
1 AACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT
** * * * *
32537 GGATTATCTTGAATA-GTTAACAGAATCGAAGTTTTAAAAGAACTCGTAAAAGTTT-ACAA-ATT
66 GGATCGTCTTGAATACTTTAA-GGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAATA-T
* * * * * * *
32599 TGAAAGTTCGTCGAAGAATCAAGAGAGAAACAATTCTCATGTAAAGAAGTTTTTAATTCAAAGAC
129 CGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
*
32664 CAAAACTAGTTTA-AGAAATGACA
194 CAAAACTTGTTTACA-AAATGACA
* * * *** * * * * *
32687 AACTATTCAGAACAAATAACATGACTTCCCAAGCACGAAATTTTC-AGAAAATTGCTCGAAAGAA
1 AACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAA
* * * * * *
32751 TGGATAGTCTTGAATACTTTAATGAATC-AATGTTAAAAAAGAACTTGTAAAAGTTTGGCAAGT-
65 TGGATCGTCTTGAATACTTTAAGGAACCGAA-GTTATAAAAGAACTCGTAAAAGTTTGACAA-TA
* * * * * * * * *
32814 TCAGAAGTTCGTCCACGAGCCAAGAGCGAAACAATTCTCATGTAAATAACTTTTTAATTAAAACA
128 TCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
32879 CCAAAACTTGTTTACAAAATGACA
193 CCAAAACTTGTTTACAAAATGACA
* * * * ** * * * * *
32903 AACTATTTAGA-TAGATTAATGAGATTTTTCGACCATGGAATGTTTGAAAAATAGCTC-AAAGAA
1 AACTATTTAGACCA-AATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAA
* * * * ** * *
32966 TGGATCATCTTGATTGC-TTAACGAACAAAAGTTTTCAAAGAACTCGTAAAAGTTTG-CAA-ATT
65 TGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAATA-T
* * * * *
33028 TGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTATCACGTAAAGAAGTTTTTAATTCAAAGAC
129 CGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
*
33093 CAAAACTTGTTTACAAAATAACA
194 CAAAACTTGTTTACAAAATGACA
* * * *
33116 AACTATTTAGACCTAATGATGCAATTT-CTAGAGCGTGGAATGTTCGAAAAATTGCTCGAAGGAA
1 AACTATTTAGACCAAATGATGCGATTTCCCA-AGCATGGAATGTTCGAAAAATTGCTCGAAGGAA
* * * * * *
33180 TGGATCGTCTTGAACACTTTATGGAACCTAAATTATAAAAGAAC-CAGTAACAA-TTTAACTAGT
65 TGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC-GTAA-AAGTTTGAC-AAT
* * ** * *
33243 -TCAGATGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAGAG
127 ATCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
*
33307 A-CAGAAACCTGTTTACAAAATGACA
192 ACCA-AAACTTGTTTACAAAATGACA
* * ** * * * *
33332 AACTATTTAGTCCAAATGATGCAATTTATCGAGCATGGAATGTT-TAGAAAATTGATCGATGGAA
1 AACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAA
* * * * * * *
33396 TGGATCGTCTTGTATACTCTCAGGAACCAAAATTATAAAAAAACTCGTAAATGTTTG
65 TGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTG
33453 GCAAGTTCAG
Statistics
Matches: 3736, Mismatches: 699, Indels: 322
0.79 0.15 0.07
Matches are distributed among these distances:
192 5 0.00
193 22 0.01
194 29 0.01
195 8 0.00
196 2 0.00
197 3 0.00
198 86 0.02
199 15 0.00
200 2 0.00
201 50 0.01
202 3 0.00
203 85 0.02
204 9 0.00
205 1 0.00
206 4 0.00
207 6 0.00
208 18 0.00
209 4 0.00
210 74 0.02
211 12 0.00
212 136 0.04
213 399 0.11
214 814 0.22
215 773 0.21
216 978 0.26
217 195 0.05
218 3 0.00
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (216 bp):
AACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT
GGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAATATCG
GAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
AAACTTGTTTACAAAATGACA
Found at i:30097 original size:430 final size:431
Alignment explanation
Indices: 28405--33459 Score: 4642
Period size: 429 Copynumber: 11.9 Consensus size: 431
28395 TCATAAACAG
* * *
28405 GTTTTTTATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAC
1 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGAT
* * * *
28470 TTCCCTAGCATGGAATGTTTGAAAAATTGCTCGAAAGACTGGATCATCTTGAATACTTTAAGGAA
66 TTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGAA
** * * *
28535 CTTAAGTTATAAAAGAACTCGCAAAAGTTTGACAAGTT-AGAAAGTTCGTCCAAGAACCAAGGGA
131 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCATCCAAGAACCAAGAGA
* * * * ***
28599 GAAACAA-T-T-A--T-CAT--G---TAAATT--------AAAACTTGTTCATAAAATGGTGAAC
195 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
** * * *
28645 TATTTAGAAAAAATGATGCGATCTT-CTGAGCATGAAATGTTCG-AAAATTGCTCGAAGGATTGG
260 TATTTAGACTAAATGATGCGAT-TTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGG
* * * ** * * * *
28708 -TTGACTTAAATACTTTAAGAAACAAAATTTATAAAAGAACTCGAAAAAGTTTAACAAG-TTCAG
324 ATCG-CTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGA-
* * *
28771 AAGTTCAGCCAAGAACCAAGAGAAAAACAATTTTCACGTAAATAA
387 AAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * *
28816 GTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGAGAAACTATTTAGACCAAATTATGTGAT
1 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGAT
* * * ** * * *
28881 TTACCGAGCATGGAATGTTCGAAAAATTGGTCGACGGAATGGATCATCTT-ATATACTCTCAGGA
66 TTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCGTCTTGA-ATACTTTAAGGA
* * * * * *
28945 ACCGAAGTTGTAAAAGAACTCATAAATGTTTGCCAAGATCAGAAGTTCATCCAAGAA-TAA-AGA
130 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGA
* * * * *
29008 GAAACAGTTCTCATGTAAATAAGTTTATAATTCAAAGACCAAAACTTATTTACGAAATGACAAAC
195 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
* * ** ** * * * * *
29073 TTTTTAGACCAAATGATGTTATTTCTTGAGCTTGGATTGTTCAAAAAATTGCTGGAAGGAATGAA
260 TATTTAGACTAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGA
* * * * *
29138 TCATCATGAAAACTTTAAGGAACCGAAGTTATAAAAGAAGTCGTAAAAGTTTGACAA-TATTGGA
325 TC-GCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT-TTGAA
* * * *
29202 AGTTCATCCAAGAAGCAAGAGAGAATCAATTTTCACATAAATAA
388 AGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* *
29246 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATAACAAACTATTTAGACCTAATGATGTGAT
1 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGAT
* * *
29311 TTCCCCAAGCATGGAATGTTCGAAAAATTGCTC-AAAGGAATAGATTC-TCTTGAATACTGTAAT
66 TT-CCCAAGCATGGAATGTTCGAAAAATTGCTCGAAA-GAATGGA-TCGTCTTGAATACTTTAAG
* * *
29374 GAACCGAAGTTATAAAAGAACTCGTAATAGTTTGACAGGTTCAAAAGTTCATCCAAGAACCAAGA
128 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGA
* * *
29439 GAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAG-CCTAAAACTTTTTTACAAAATAACA
193 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAAACTTGTTTACAAAATGACA
* * * *
29503 AACTATTTAGACCAAATGATGCGACTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAA-AAAT
257 AACTATTTAGACTAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT
* * * * * * ** *
29567 GGATCGTCTTGAATAC-TTAACAGAATCGAAGTTTTAAAAGAATTTGCAAAAGTTTG-CAAAATC
322 GGATCG-CTTGAATACTTTAA-GGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTT
* * *
29630 GAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACATAAAAAA
385 GAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * *
29677 GTTTTTAATTCAAAGACCAAAACTTGTTTAAAAAATGACAAATTATTTAGACCAAATGATGTGAC
1 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGAT
* * * *
29742 TTCCTAAGCATGGAATGTTTGGAAATTTGCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGAA
66 TTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGAA
* * * * *
29807 CCAAAGTTAAAAAAGAACTTGTAAAAGTTTGACAAG-TCGGAAGTTCATCCACGAACCAAGAGAG
131 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAG
* * * * * * *
29871 AAACAATTCTTACGTAAATAAGTTTTTAAATCAAACACCAAAACTAGTTCATAAAATGTCAAACT
196 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
* * * **** * *
29936 ATTTAGA-TAGATTGTTGTGATTTTTAAAGCATGGGATGTTCAAAAAATTGCTCGAAGGAATGGA
261 ATTTAGACTA-AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGA
* * *
30000 TCGCTTATAATACTTTAAGGAACCAAAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTTGAAA
325 TCGCTT-GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGAAA
* * * * * *
30065 TTTCATCCATGAACCAAAAGA-AAAAAATTCTCACGCAAAGAA
389 GTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * * * *
30107 GTTTTTAATTCAAAGACCAAAACTTGTTTAAAAAATGAAAAATTATTTAGACCAACTGGTGTGAC
1 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGAT
** * * * *
30172 TTCCCAAGCATGGAAT-TGTAAAAAAATTGCTTGAAGGAATGGATCGTCTTGAACACTTTATGGA
66 TTCCCAAGCATGGAATGT-TCGAAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGA
* * ** *
30236 ACCGAAGTTATAAAAGAACTCGTAATAGTTTGACTAGTTTGGATGTTCATCCAAGAACCAAGAGA
130 ACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGA
* * *
30301 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAACCTGTTTACAAAGTGACAAAC
195 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
* * * * * * * * * * *
30366 TATTTAGTCCAAATGATGCAATTTACAGAGCATGGAATGTTTGGAAAACTGATC-AGCGGAATAG
260 TATTTAGACTAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGA-AGGAATGG
* * * * *
30430 ATCGTCTTGTATACTGTCAA-GAACCGAAGTTATAAAAAAACTCGTAAATA-TTTGGCAAG-TTC
324 ATCG-CTTGAATACT-TTAAGGAACCGAAGTTATAAAAGAACTCGTAAA-AGTTTGACAAGTTTG
* * * * *
30492 AGAAGTTCGTCCAAGAA-TAA-AGAGAAATAATTCTCAAGTATATAA
386 A-AAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * *
30537 GTTTATAATTCAAAGACCAAAACTTGTTTA-AAAATGACAAACTTTTTAGACCAAAGGATGTTAT
1 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGAT
* * * * * *
30601 TTCCCGAGCATTGATTGTTCGAAAAATTGCTGGAAGGAATGGATCGTCTTGAACACTTTAAGGAA
66 TTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGAA
* * * *
30666 CCGAAGTTATAAAAGAACTCATAAAAGTTTGACAAGATC-GAAAATTCATCCAAGAAGCAAGAGA
131 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCATCCAAGAACCAAGAGA
* * * ** *
30730 GAATCAATTTTCTCGTAAATAAAATTTTAATTCAAAGACCAAAACTTGTTTACAAAATAACAAAC
195 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAAC
* * * * * *
30795 TATATAGACCT-AATGATGCAATTTCCCGAGCATGGAATGTT-GAGAAAACTACTCGTAGGAGTG
260 TATTTAGA-CTAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATG
* * * * *
30858 GATTCTCTTGAATACTTTGACGAACCAAAG-TA-ATAA-AA---G---AAG-TT--C-A----G-
323 GA-TCGCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGA
* *
30905 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCTCGTAAATAA
387 AAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * *
30950 GTTTTTAATTCAAA-ACCCAAAACTTTTTTACAAAATAACGAACTATTTAGACC-AA--ATG-GA
1 GTTTTTAATTCAAAGA-CCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGA
* * * * *
31010 CTTCCCAAGCATGGAATGTTTGAAAAATTGCTTG-AAGAATGAATCGTCTTGAATAC-TTAATGA
65 TTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAA-GG
* * * * * *
31073 AACCGAAGTTTTAAAACAACTTGTAAAAGTCTG-CAAATT-TGAAAGTTCATCCAAGAACCAAGA
129 AACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCATCCAAGAACCAAGA
* * * *
31136 GAGAAACAATTCTCATGTAAAGAAGTTTTTAATTCAAAGACCAAAACTTATTGA-AGAAATGAC-
193 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACA-AAATGACA
** * * * *
31199 -ACTATTTAGAAC-AAATGACACGACTTCCCAAACATGGAATGTTCGAAAAATTGCTCGAAAGAA
257 AACTATTTAG-ACTAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAA
* * *
31262 TGGATCATCTTGAATACTTTAAGGAACCAAAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTT
321 TGGATC-GCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTT
*
31327 GAAAGTT-AGTCCACGAACCAAGAGAGAAACAATTCTCACGTAAATAA
385 GAAAGTTCA-TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * * * *
31374 CTTTTTAATCCAAAGGCCAAAACTTGTTTACAAAATGACAAACTGTTTAGA-CAGATTGATGCGA
1 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCA-AATGATGTGA
**** * * *
31438 TTTTTTGAGCATGGAATGTTCGAAAAATTGCTCG-AAGAGTGGATCATCTTGAATAC-TTAACAG
65 TTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAA-GG
* * * * * * * * *
31501 AAGCGAAGTTTTCAAAGAATTTGTAAAAGTTT-TCAAATTCTAG-AGATCATACAAGAACCAAGA
129 AACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-AGAAGTTCATCCAAGAACCAAGA
* * * * * *
31564 GAGAAACAATTATCATGTAAAGAAGTTTGTAA-TCAAAGACCAAAACTTGTTTACAAAATAAAAA
193 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAA
* * * * *
31628 ACTATTTAGACCT-AATGATGCGATTTCTCTAGCGTGAAATGTTTG-AAAATTGCTCGAAGGAAT
258 ACTATTTAGA-CTAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT
* * * * * *
31691 GGATCGTCTTGAACACTTTATGGAACCGAAGTTATAAAAGGACTTGTAACAGTTTGACTAGTTTG
322 GGATCG-CTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTG
* * * * ** *
31756 GATGTTCATCGAAGAACCAAGAGAGGAGTAATTCTCACATAAATAA
386 AAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * ** * * * **
31802 GTTTTCAATTCAAACATAAAAACCTATTTACAAAATGACAAACTATTTAGTCCAAATGATGCAAT
1 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGAT
* * * * ** **
31867 TTACCAAGCATGGAATGTT-TATAAAATTGATTGACGGAATGGATCGTCTTCTATACTATT-AGG
66 TTCCCAAGCATGGAATGTTCGA-AAAATTGCTCGAAAGAATGGATCGTCTTGAATACT-TTAAGG
* * *
31930 AACCGAAGTTATAAAAGAACTCGTAAATGTTTGGCAAGTTCAGAAGTTCATCCAAGAA-TAA-AG
129 AACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAG
* *
31993 AGAAACAATTCTCACGTAAATAAGTTTATAATTGAAAGACCAAAACTTGTTT--AAAATGA-AAA
194 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAA
* * * ** * * *
32055 TCTTTTTAGACAAAATGAAGTTATTTCCAGAGCATGGATTGTTCGAAAAATTACT-GTAAGGAAT
259 -CTATTTAGACTAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCG-AAGGAAT
* * * * *
32119 GGATCATCTTGAAAACTTTAAGGAACCGAAGTTATAAAAG---T-TTCAAAG-AT--C-A-----
322 GGATC-GCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTG
* * * *
32171 AAAGTTCCTCCAAGAAGCAAGAGAGAATCAATTTTCACGTAAATAA
386 AAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * * **
32217 GTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATAACAAACTATTTTGACCTAATGATACGAT
1 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGAT
*** * * * * *
32282 TTCTTGAGCATGGAATGTTCAAAAAATTCCTTG-AAGAAATGGATTC-TCTTGATTACTTTAACG
66 TTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAAG-AATGGA-TCGTCTTGAATACTTTAAGG
* * *
32345 AACCAAAGTTATAAAAGAACTCGTAACAA-TTTGACAAGTTCAGAAGTTCGTCCAACAACCAAGA
129 AACCGAAGTTATAAAAGAACTCGTAA-AAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGA
* * * *
32409 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGCCCGAAACATT-TTTACAAAATAATA
193 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAC-TTGTTTACAAAATGACA
* * ** * * *
32473 AACTATTTAGACCAAATGACGCGACATCCCAAGCATGGGATGTTCGAAAAATTGTTCGAA-GAAT
257 AACTATTTAGACTAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT
** * * * * *
32537 GGATTATCTTGAATA-GTTAACAGAATCGAAGTTTTAAAAGAACTCGTAAAAGTTT-ACAAATTT
322 GGA-TCGCTTGAATACTTTAA-GGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTT
* * * * *
32600 GAAAGTTCGTCGAAGAATCAAGAGAGAAACAATTCTCATGTAAAGAA
385 GAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * * **
32647 GTTTTTAATTCAAAGACCAAAACTAGTTTA-AGAAATGACAAACTATTCAGAACAAATAACATGA
1 GTTTTTAATTCAAAGACCAAAACTTGTTTACA-AAATGACAAACTATTTAGACCAAATGATGTGA
* * * * * *
32711 CTTCCCAAGCACGAAATTTTC-AGAAAATTGCTCGAAAGAATGGATAGTCTTGAATACTTTAATG
65 TTTCCCAAGCATGGAATGTTCGA-AAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAAGG
* * * * * * *
32775 AATC-AATGTTAAAAAAGAACTTGTAAAAGTTTGGCAAGTTCAGAAGTTCGTCCACGAGCCAAGA
129 AACCGAA-GTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGA
* * * * *
32839 GCGAAACAATTCTCATGTAAATAACTTTTTAATTAAAACACCAAAACTTGTTTACAAAATGACAA
193 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAA
* * * ** * * * *
32904 ACTATTTAGA-TAGATTAATGAGATTTTTCGACCATGGAATGTTTGAAAAATAGCTC-AAAGAAT
258 ACTATTTAGACTA-AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT
* * * * ** * * *
32967 GGATCATCTTGATTGC-TTAACGAACAAAAGTTTTCAAAGAACTCGTAAAAGTTTG-CAAATTTG
322 GGATC-GCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTG
* * *
33030 AAAGTTCGTCCAAGAACCAAGAGAGAAACAATTATCACGTAAAGAA
386 AAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * **
33076 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATAACAAACTATTTAGACCTAATGATGCAAT
1 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGAT
* * * * *
33141 TT-CTAGAGCGTGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAACACTTTATGGA
66 TTCCCA-AGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGA
* * * * * **
33205 ACCTAAATTATAAAAGAAC-CAGTAACAA-TTTAACTAGTTCAGATGTTTGTCCAAGAACCAAGA
130 ACCGAAGTTATAAAAGAACTC-GTAA-AAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGA
* * *
33268 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAGAGA-CAGAAACCTGTTTACAAAATGACA
193 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA-AAACTTGTTTACAAAATGACA
* * * ** * * *
33332 AACTATTTAGTCCAAATGATGCAATTTATCGAGCATGGAATGTT-TAGAAAATTGATCGATGGAA
257 AACTATTTAGACTAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAA
* * * * * * * *
33396 TGGATCGTCTTGTATACTCTCAGGAACCAAAATTATAAAAAAACTCGTAAATGTTTGGCAAGTT
321 TGGATCG-CTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT
33460 CAGAAGTTTG
Statistics
Matches: 3775, Mismatches: 697, Indels: 323
0.79 0.15 0.07
Matches are distributed among these distances:
405 2 0.00
406 72 0.02
407 6 0.00
408 83 0.02
409 58 0.02
410 33 0.01
411 176 0.05
412 7 0.00
413 49 0.01
414 23 0.01
415 184 0.05
416 9 0.00
417 53 0.01
418 34 0.01
419 54 0.01
420 10 0.00
421 2 0.00
422 5 0.00
423 5 0.00
424 89 0.02
425 3 0.00
426 6 0.00
427 70 0.02
428 456 0.12
429 840 0.22
430 828 0.22
431 451 0.12
432 63 0.02
433 104 0.03
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (431 bp):
GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGAT
TTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGAA
CCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAG
AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
ATTTAGACTAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
CGCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGAAAGT
TCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
Found at i:30683 original size:429 final size:431
Alignment explanation
Indices: 28642--33477 Score: 4525
Period size: 430 Copynumber: 11.3 Consensus size: 431
28632 TAAAATGGTG
** * * * *
28642 AACTATTTAGAAAAAATGATGCGATCTT-CTGAGCATGAAATGTTCG-AAAATTGCTCGAAGGAT
1 AACTATTTAGACCAAATGATGCAAT-TTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAA
* * * ** * * *
28705 TGGTTGA-CTTAAATACTTTAAGAAACAAAATTTATAAAAGAACTCGAAAAAGTTTAACAAGTTC
65 TGGATCATCTTGAATACTTTAAG-AACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC
* *
28769 AGAAGTTCAG-CCAAGAACCAAGAGAAAAACAATTTTCACGTAAATAAGTTTTTAATTCAAAGAC
129 AGAAGTTC-GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * * * *
28833 AAAAACTTGTTTACAAAATGAGAAACTATTTAGACCAAATTATGTGATTTACCGAGCATGGAATG
193 CAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATG
* * * * * *
28898 TTCGAAAAATTGGTCGACGGAATGGATCATCTT-ATATACTCTCAGGAACCGAAGTTGTAAAAGA
258 TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGA-ATACTTTAAGGAACCGAAGTTATAAAAGA
* * * * * * *
28962 ACTCATAAATGTTTGCCAAGATCAGAAGTTCATCCAAGAA-TAA-AGAGAAACAGTTCTCATGTA
322 ACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTA
* * *
29025 AATAAGTTTATAATTCAAAGACCAAAACTTATTTACGAAATGACA
387 AATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACA
* ** ** * * * *
29070 AACTTTTTAGACCAAATGATGTTATTTCTTGAGCTTGGATTGTTCAAAAAATTGCTGGAAGGAAT
1 AACTATTTAGACCAAATGATGCAATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT
* * * * *
29135 GAATCATCATGAAAACTTTAAGGAACCGAAGTTATAAAAGAAGTCGTAAAAGTTTGACAA-TATT
66 GGATCATCTTGAATACTTTAA-GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT-TC
* * * * * *
29199 GGAAGTTCATCCAAGAAGCAAGAGAGAATCAATTTTCACATAAATAAGTTTTTAATTCAAAGACC
129 AGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* *
29264 AAAACTTGTTTACAAAATAACAAACTATTTAGACCTAATGATGTGATTTCCCCAAGCATGGAATG
194 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTT-CCCAAGCATGGAATG
* * * *
29329 TTCGAAAAATTGCTCAAAGGAATAGATTC-TCTTGAATACTGTAATGAACCGAAGTTATAAAAGA
258 TTCGAAAAATTGCTCGAAGGAATGGA-TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGA
* * * *
29393 ACTCGTAATAGTTTGACAGGTTCAAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACATA
322 ACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTA
* *
29458 AATAAGTTTTTAATTCAAAG-CCTAAAACTTTTTTACAAAATAACA
387 AATAAGTTTTTAATTCAAAGACC-AAAACTTGTTTACAAAATGACA
* * *
29503 AACTATTTAGACCAAATGATGCGACTTCCCA-AGCATGGAATGTTCGAAAAATTGCTCGAA-AAA
1 AACTATTTAGACCAAATGATGC-AATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAA
* * * * * * * **
29566 TGGATCGTCTTGAATACTTAACAGAATCGAAGTTTTAAAAGAATTTGCAAAAGTTTG-CAAAATC
65 TGGATCATCTTGAATACTTTA-AGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC
* * * *
29630 -GAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACATAAAAAAGTTTTTAATTCAAAGAC
129 AG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * * *
29694 CAAAACTTGTTTAAAAAATGACAAATTATTTAGACCAAATGATGTGACTTCCTAAGCATGGAATG
193 CAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATG
* * * * * *
29759 TTTGGAAATTTGCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTAAAAAAGAA
258 TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAA
* * * *
29824 CTTGTAAAAGTTTGACAAG-TCGGAAGTTCATCCACGAACCAAGAGAGAAACAATTCTTACGTAA
323 CTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAA
* * * * * *
29888 ATAAGTTTTTAAATCAAACACCAAAACTAGTTCATAAAATGTCA
388 ATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACA
* * * ** ** * * *
29932 AACTATTTAGA-TAGATTGTTGTGATTTTTAAAGCATGGGATGTTCAAAAAATTGCTCGAAGGAA
1 AACTATTTAGACCA-AATGATGCAATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAA
* * * *
29996 TGGATC-GCTTATAATACTTTAAGGAACCAAAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGTT
65 TGGATCATCTT-GAATACTTTAA-GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT
* * * * * * * *
30060 -TGAAATTTCATCCATGAACCAAAAGA-AAAAAATTCTCACGCAAAGAAGTTTTTAATTCAAAGA
128 CAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* * * * * *
30123 CCAAAACTTGTTTAAAAAATGAAAAATTATTTAGACCAACTGGTGTGACTTCCCAAGCATGGAAT
192 CCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCAAGCATGGAAT
** * * *
30188 -TGTAAAAAAATTGCTTGAAGGAATGGATCGTCTTGAACACTTTATGGAACCGAAGTTATAAAAG
257 GT-TCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
* * ** *
30252 AACTCGTAATAGTTTGACTAGTTTGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGT
321 AACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGT
* * *
30317 AAATAAGTTTTTAATTCAAAGACAAAAACCTGTTTACAAAGTGACA
386 AAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACA
* * * * * * *
30363 AACTATTTAGTCCAAATGATGCAATTTACAGAGCATGGAATGTTTGGAAAACTGATC-AGCGGAA
1 AACTATTTAGACCAAATGATGCAATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGA-AGGAA
* * * * * *
30427 TAGATCGTCTTGTATACTGTCAAGAACCGAAGTTATAAAAAAACTCGTAAATA-TTTGGCAAGTT
65 TGGATCATCTTGAATACT-TTAAGAACCGAAGTTATAAAAGAACTCGTAAA-AGTTTGACAAGTT
* * * * *
30491 CAGAAGTTCGTCCAAGAA-TAA-AGAGAAATAATTCTCAAGTATATAAGTTTATAATTCAAAGAC
128 CAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * * * * *
30554 CAAAACTTGTTTA-AAAATGACAAACTTTTTAGACCAAAGGATGTTATTTCCCGAGCATTGATTG
193 CAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATG
* *
30618 TTCGAAAAATTGCTGGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCGAAGTTATAAAAGAA
258 TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAA
* * * * * * *
30683 CTCATAAAAGTTTGACAAGATC-GAAAATTCATCCAAGAAGCAAGAGAGAATCAATTTTCTCGTA
323 CTCGTAAAAGTTTGACAAGTTCAG-AAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTA
** *
30747 AATAAAATTTTAATTCAAAGACCAAAACTTGTTTACAAAATAACA
387 AATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACA
* * * * * * *
30792 AACTATATAGACCTAATGATGCAATTTCCCGAGCATGGAATGTT-GAGAAAACTACTCGTAGGAG
1 AACTATTTAGACCAAATGATGCAATTTCCAGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAA
**
30856 TGGATTC-TCTTGAATACTTT--G-A-CG-A---ACCAAAGTAA----TAAAA----G--AAGTT
65 TGGA-TCATCTTGAATACTTTAAGAACCGAAGTTATAAAAG-AACTCGTAAAAGTTTGACAAGTT
*
30902 CAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCTCGTAAATAAGTTTTTAATTCAAA-AC
128 CAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-
* * * *
30966 CCAAAACTTTTTTACAAAATAACGAACTATTTAGACC-AA--ATG-GACTTCCCAAGCATGGAAT
192 CCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCAAGCATGGAAT
* * * * * *
31027 GTTTGAAAAATTGCTTGAA-GAATGAATCGTCTTGAATAC-TTAATGAAACCGAAGTTTTAAAAC
257 GTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAA-GGAACCGAAGTTATAAAAG
* * * * *
31090 AACTTGTAAAAGTCTG-CAAATT-TGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCATG
321 AACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACG
* * *
31153 TAAAGAAGTTTTTAATTCAAAGACCAAAACTTATTGA-AGAAATGAC-
385 TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACA-AAATGACA
* ** * * * *
31199 -ACTATTTAGAACAAATGACACGACTTCCCA-AACATGGAATGTTCGAAAAATTGCTCGAAAGAA
1 AACTATTTAGACCAAATGATGC-AATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAA
* *
31262 TGGATCATCTTGAATACTTTAAGGAACCAAAGTTAAAAAAGAACTCGTAAAAGTTTGACAAGTT-
65 TGGATCATCTTGAATACTTTAA-GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC
* * * * * *
31326 TGAAAGTTAGTCCACGAACCAAGAGAGAAACAATTCTCACGTAAATAACTTTTTAATCCAAAGGC
129 AG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * * ****
31391 CAAAACTTGTTTACAAAATGACAAACTGTTTAGA-CAGATTGATGCGATTTTTTGAGCATGGAAT
193 CAAAACTTGTTTACAAAATGACAAACTATTTAGACCA-AATGATGTGATTTCCCAAGCATGGAAT
* * * * * *
31455 GTTCGAAAAATTGCTCGAA-GAGTGGATCATCTTGAATAC-TTAACAGAAGCGAAGTTTTCAAAG
257 GTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAA-GGAACCGAAGTTATAAAAG
* * * * * * * *
31518 AATTTGTAAAAGTTT-TCAAATTCTAG-AGATCATACAAGAACCAAGAGAGAAACAATTATCATG
321 AACTCGTAAAAGTTTGACAAGTTC-AGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACG
* * * *
31581 TAAAGAAGTTTGTAA-TCAAAGACCAAAACTTGTTTACAAAATAAAA
385 TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACA
* * * * * *
31627 AACTATTTAGACCTAATGATGCGATTTCTC-TAGCGTGAAATGTTTG-AAAATTGCTCGAAGGAA
1 AACTATTTAGACCAAATGATGCAATTTC-CAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAA
* * * * * * * *
31690 TGGATCGTCTTGAACACTTTATGGAACCGAAGTTATAAAAGGACTTGTAACAGTTTGACTAGTTT
65 TGGATCATCTTGAATACTTTA-AGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC
* * * * * ** * * * **
31755 GGATGTTCATCGAAGAACCAAGAGAGGAGTAATTCTCACATAAATAAGTTTTCAATTCAAACATA
129 AGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* * * ** *
31820 AAAACCTATTTACAAAATGACAAACTATTTAGTCCAAATGATGCAATTTACCAAGCATGGAATGT
194 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATGT
* * * * **
31885 T-TATAAAATTGATTGACGGAATGGATCGTCTTCTATACTATT-AGGAACCGAAGTTATAAAAGA
259 TCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACT-TTAAGGAACCGAAGTTATAAAAGA
* * *
31948 ACTCGTAAATGTTTGGCAAGTTCAGAAGTTCATCCAAGAA-TAA-AGAGAAACAATTCTCACGTA
322 ACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTA
* *
32011 AATAAGTTTATAATTGAAAGACCAAAACTTGTTT--AAAATGA-A
387 AATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACA
* * * ** * *
32053 AATCTTTTTAGACAAAATGAAGTTATTTCCAGAGCATGGATTGTTCGAAAAATTACT-GTAAGGA
1 AA-CTATTTAGACCAAATGATGCAATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCG-AAGGA
* * *
32117 ATGGATCATCTTGAAAACTTTAAGGAACCGAAG-T-T------A----TAAAAGTTTCA-AAGAT
64 ATGGATCATCTTGAATACTTTAA-GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT
* * * * *
32169 CAAAAGTTCCTCCAAGAAGCAAGAGAGAATCAATTTTCACGTAAATAAGTTTTTAATTCAAAGAC
128 CAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * * * ** ***
32234 CAAAATTTGTTTACAAAATAACAAACTATTTTGACCTAATGATACGATTTCTTGAGCATGGAATG
193 CAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATG
* * * * * * *
32299 TTCAAAAAATTCCTTGAAGAAATGGATTC-TCTTGATTACTTTAACGAACCAAAGTTATAAAAGA
258 TTCGAAAAATTGCTCGAAGGAATGGA-TCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGA
* *
32363 ACTCGTAACAA-TTTGACAAGTTCAGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGT
322 ACTCGTAA-AAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGT
* * * *
32427 AAATAAGTTTTTAATTCAAAGCCCGAAACATT-TTTACAAAATAATA
386 AAATAAGTTTTTAATTCAAAGACCAAAAC-TTGTTTACAAAATGACA
* * * *
32473 AACTATTTAGACCAAATGACGCGACA-TCCCA-AGCATGGGATGTTCGAAAAATTGTTCGAA-GA
1 AACTATTTAGACCAAATGATGC-A-ATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGA
* * * * * *
32535 ATGGATTATCTTGAATAGTTAACAGAATCGAAGTTTTAAAAGAACTCGTAAAAGTTT-ACAAATT
64 ATGGATCATCTTGAATACTTTA-AGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT
* * * * *
32599 -TGAAAGTTCGTCGAAGAATCAAGAGAGAAACAATTCTCATGTAAAGAAGTTTTTAATTCAAAGA
128 CAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* * * * ** * * *
32663 CCAAAACTAGTTTA-AGAAATGACAAACTATTCAGAACAAATAACATGACTTCCCAAGCACGAAA
192 CCAAAACTTGTTTACA-AAATGACAAACTATTTAGACCAAATGATGTGATTTCCCAAGCATGGAA
* * * * * *
32727 TTTTC-AGAAAATTGCTCGAAAGAATGGATAGTCTTGAATACTTTAATGAATC-AATGTTAAAAA
256 TGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA-GTTATAAA
* * * * * * *
32790 AGAACTTGTAAAAGTTTGGCAAGTTCAGAAGTTCGTCCACGAGCCAAGAGCGAAACAATTCTCAT
319 AGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCAC
* * *
32855 GTAAATAACTTTTTAATTAAAACACCAAAACTTGTTTACAAAATGACA
384 GTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACA
** * * * * * *
32903 AACTATTTAGATAGATTAATGA-G-ATTTTTC-GACCATGGAATGTTTGAAAAATAGCTC-AAAG
1 AACTATTTAGA-CCA--AATGATGCAATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGG
* * ** * * *
32964 AATGGATCATCTTGATTGC-TTAACGAACAAAAGTTTTCAAAGAACTCGTAAAAGTTTG-CAAAT
63 AATGGATCATCTTGAATACTTTAA-GAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* * *
33027 T-TGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTATCACGTAAAGAAGTTTTTAATTCAAAG
127 TCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * ** * *
33091 ACCAAAACTTGTTTACAAAATAACAAACTATTTAGACCTAATGATGCAATTT-CTAGAGCGTGGA
191 ACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCA-AGCATGGA
* * * *
33155 ATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAACACTTTATGGAACCTAAATTATAAAA
255 ATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAA
* * * **
33220 GAAC-CAGTAACAA-TTTAACTAGTTCAGATGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCA
320 GAACTC-GTAA-AAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCA
* * *
33283 CGTAAATAAGTTTTTAATTTAGAGA-CAGAAACCTGTTTACAAAATGACA
383 CGTAAATAAGTTTTTAATTCAAAGACCA-AAACTTGTTTACAAAATGACA
* * * * *
33332 AACTATTTAGTCCAAATGATGCAATTTATC-GAGCATGGAATGTT-TAGAAAATTGATCGATGGA
1 AACTATTTAGACCAAATGATGCAATTT-CCAGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGA
* * * * * * * * *
33395 ATGGATCGTCTTGTATACTCTCAGGAACCAAAATTATAAAAAAACTCGTAAATGTTTGGCAAGTT
64 ATGGATCATCTTGAATACT-TTAAGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT
*
33460 CAGAAGTTTGTCCAAGAA
128 CAGAAGTTCGTCCAAGAA
33478 TAAAGAGAAA
Statistics
Matches: 3592, Mismatches: 659, Indels: 310
0.79 0.14 0.07
Matches are distributed among these distances:
405 2 0.00
406 57 0.02
407 8 0.00
408 80 0.02
409 48 0.01
410 32 0.01
411 27 0.01
412 4 0.00
413 50 0.01
414 23 0.01
415 189 0.05
416 16 0.00
417 51 0.01
418 35 0.01
419 47 0.01
420 14 0.00
421 3 0.00
422 1 0.00
423 3 0.00
424 92 0.03
425 2 0.00
426 12 0.00
427 70 0.02
428 439 0.12
429 822 0.23
430 833 0.23
431 437 0.12
432 85 0.02
433 107 0.03
434 3 0.00
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (431 bp):
AACTATTTAGACCAAATGATGCAATTTCCAGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT
GGATCATCTTGAATACTTTAAGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG
AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
AACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATGTTC
GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTC
GTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
AGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACA
Found at i:33843 original size:368 final size:369
Alignment explanation
Indices: 33115--33845 Score: 857
Period size: 368 Copynumber: 2.0 Consensus size: 369
33105 ACAAAATAAC
* * **
33115 AAACTATTTAGACCTAATGATGCAATTTCTAGAGCGTGGAATGTTCGAAAAATTGCTCGAAGGAA
1 AAACTATTTAGACCAAATGATGCAATTTCCAGAGCAAGGAATGTTCGAAAAATTGCTCGAAGGAA
* * * *
33180 TGGATCGTCTTGAACACTTTATGGAACCTAAATTATAAAAGAACCAGTAACAATTTAACTAGTTC
66 TGGATCGTCTTGAACACTTTAAGGAACCTAAATTATAAAAGAACCAG-AAAAATTTAACAAGATC
* * * * * * *
33245 AGATGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAGAGACA
130 AGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATTCAAACACA
* * *
33310 GAAACCTGTTTACAAAATGACAAACTATTTAGTCCAAATGATGCAATTTATCGAGCATGGAATGT
195 GAAACCTGTTTACAAAATAACAAACTATTTAGACCAAATGATGCAATTTACCGAGCATGGAATGT
* * * * * * *
33375 TTAGAAAATTGATCGATGGAATGGATCGTCTTGTATACTCTCAGGAACCAAAATTATAAAAAAAC
260 TCAGAAAATTGATCGAAGGAATGGATCGTCTTGAATACTCTAACGAAACAAAATAATAAAAAAAC
* * *
33440 TCGTAAATGTTTGGCAAGTTCAGAAGTTTGTCCAAGAATAAAGAG
325 TCGTAAATATTTGACAAGTTCAGAAGTTCGTCCAAGAATAAAGAG
* ** * * *
33485 AAACTTTTTAGACCAAATGATG-TTTTTCCAGAGCAAGGATTGTTCG-AAAATTGTTGGAAGGAA
1 AAACTATTTAGACCAAATGATGCAATTTCCAGAGCAAGGAATGTTCGAAAAATTGCTCGAAGGAA
* * *
33548 TGGATCGTCTTGGACACTTTAAGGAACC-ACAGTTATAAAAGAACTCA-AAAAAGTTTGACAAGA
66 TGGATCGTCTTGAACACTTTAAGGAACCTA-AATTATAAAAGAAC-CAGAAAAA-TTTAACAAGA
* * *
33611 TC-GAAAGTTCGT-CAAGGAAGCAAGAGAGAATCAATTTTCACATAAATAAATTTTTAATTCAAA
128 TCAG-AAGTTCGTCCAA-GAACCAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATTCAAA
* * ** *
33674 CACCA-AAACTTGTTTACAAAATAACAAACTATTTAGACCTAATGATGTGATTTCCCGAGCATGG
191 CA-CAGAAACCTGTTTACAAAATAACAAACTATTTAGACCAAATGATGCAATTTACCGAGCATGG
* * ** * * *
33738 AATGTTCAGAAATTTGCTCGAAGGAATGGATTTTCTTGAATACTTTAACGAAACGAAGTAATAAA
255 AATGTTCAGAAAATTGATCGAAGGAATGGATCGTCTTGAATACTCTAACGAAACAAAATAATAAA
*
33803 AGAACTCGTAACA-ATTTGACAAGTTCAGAAGTTCGTCCAAGAA
320 AAAACTCGTAA-ATATTTGACAAGTTCAGAAGTTCGTCCAAGAA
33846 CCAAGAAAGA
Statistics
Matches: 301, Mismatches: 53, Indels: 16
0.81 0.14 0.04
Matches are distributed among these distances:
367 9 0.03
368 249 0.83
369 23 0.08
370 20 0.07
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (369 bp):
AAACTATTTAGACCAAATGATGCAATTTCCAGAGCAAGGAATGTTCGAAAAATTGCTCGAAGGAA
TGGATCGTCTTGAACACTTTAAGGAACCTAAATTATAAAAGAACCAGAAAAATTTAACAAGATCA
GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAATTTTTAATTCAAACACAG
AAACCTGTTTACAAAATAACAAACTATTTAGACCAAATGATGCAATTTACCGAGCATGGAATGTT
CAGAAAATTGATCGAAGGAATGGATCGTCTTGAATACTCTAACGAAACAAAATAATAAAAAAACT
CGTAAATATTTGACAAGTTCAGAAGTTCGTCCAAGAATAAAGAG
Found at i:33923 original size:216 final size:216
Alignment explanation
Indices: 33485--35166 Score: 1637
Period size: 216 Copynumber: 7.8 Consensus size: 216
33475 GAATAAAGAG
* ** * * * * *
33485 AAACTTTTTAGACCAAATGATG-TTTTTCCAGAGCAAGGATTGTTC-GAAAATTGTTGGAAGGAA
1 AAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAA
* * ** *
33548 TGGATCGTCTTGGACACTTTAAGGAACC-ACAGTTATAAAAGAACTCAAAAAAGTTTGACAAGAT
66 TGGATCGTCTTGAATACTTTAAGGAACCGA-AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT
* * * * * * *
33612 C-GAAAGTTCGT-CAAGGAAGCAAGAGAGAATCAATTTTCACATAAATAAATTTTTAATTCAAAC
130 CAG-AAGTTCATCCAA-GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
*
33675 ACCAAAACTTGTTTACAAAATAAC
193 ACCAAAACTTGTTTACAAAATGAC
* * *
33699 AAACTATTTAGACCTAATGATGTGATTTCCCGAGCATGGAATGTTCAGAAATTTGCTCGAAGGAA
1 AAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAA
** * * *
33764 TGGATTTTCTTGAATACTTTAACGAAACGAAGTAATAAAAGAACTCGTAACAA-TTTGACAAGTT
66 TGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAA-AAGTTTGACAAGTT
* * *
33828 CAGAAGTTCGTCCAAGAACCAAGAAAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGCC
130 CAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* *
33893 CAAAACTTTTTTACAAAAT-AA
195 CAAAACTTGTTTACAAAATGAC
* * *
33914 AAGACTATTTAGACAAAATGATGCGACTTCCCGAGCATGAAATGTTCAGAAAATTGCTCGAA-GA
1 AA-ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGA
* * * *
33978 ATGGATCGTCTTGAACAC-TTAACGGAACCGGAGTT-TCAAAAGAACTGGTAAAAGTTTG-CAAA
65 ATGGATCGTCTTGAATACTTTAA-GGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAG
* * * * * * *
34040 TT-TGACAATTCATCCAGGCACCAAGAGAGAACCAATTCTCAAGTAAAGAAGTTTTTAATTCAAA
128 TTCAGA-AGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
34104 GACCAAAACTTGTTTA-AGAAATGAC
192 GACCAAAACTTGTTTACA-AAATGAC
* ** * * * *
34129 AAACT-TTGTAGACGAAATGATATGACTTCCCAACCATGGAATGTTCAAAAAATTGCTCGAAGGA
1 AAACTATT-TAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGA
* * *
34193 ATGGATCGTC-T---TACTTTAAGGAACCAAAGTT-TAAAAAGAACTCATAAAAGTTTAACAAGT
65 ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGT
* * * * *
34253 TCGGAAGTTCGTCCACGAGCCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTTATTCAAAGA
129 TCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
*
34318 TCAAAACTTGTTTACAAAATGAC
194 CCAAAACTTGTTTACAAAATGAC
* * * ** * *
34341 AAACTATTTAGA-CAGATTGTTGCAATTTTTCGAGCATGGAATGTTTAAAAAATTGCTCGAAGGA
1 AAACTATTTAGACCA-AATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGA
* * * * * * * *
34405 ATGAATTGCCCTAAATACTTTAAGGAATCGAAGTTAT-AAATAACTCATAAAAGTTTGACAAGTT
65 ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT
* * * *
34469 C-GAAAGTTCATCCATGAACCAAGAGA-AAA-AATTCTCAGGTAAAGAAGTTTTTAATTGAAAGA
130 CAG-AAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
*
34531 CCAAAACTTGTTTAAAAAATGAC
194 CCAAAACTTGTTTACAAAATGAC
* * * * *
34554 AAATTATTTAGACCAACTGGTGAGACTTCCCGAGCATGGAATGTTC-GAAAAATTGCTCGAAGGA
1 AAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAG-AAAATTGCTCGAAGGA
** * * ** * ** *
34618 ATATATCATCTTGAACACTTTTTGGAACCCAAGTTATAAATTAACTCGTAACAGTTTGACAAGTT
65 ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT
* * * * * **
34683 CAGATGTTCATCCAAGAACCAAAAGAAAAACAATTCTCACATAAATAAGTTCTTAATTCGCAGAC
130 CAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* *
34748 AAAAACTTGTTTACAAAATGAT
195 CAAAACTTGTTTACAAAATGAC
* * * * *
34770 AAACTACTTAGA-CAAAGTGATGCGATTTCCCTAGCATGGATTGTTCAGAAATTTGCTTGAAGGA
1 AAACTATTTAGACCAAA-TGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGA
* ** *** * * * * *
34834 ATGAATCGTCTTGAATACTTTAACAAAGAAAAGTTAAAAAAATAACACGAAAAAGTTTTACAAGT
65 ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTT-ATAAAAGAACTCGTAAAAGTTTGACAAGT
* * *
34899 TCGGAAGTTCATCCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATCCAAAGA
129 TCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG-
** * *
34964 AAAAAAACCTGTTTACAAAATTAC
193 ACCAAAACTTGTTTACAAAATGAC
* * *
34988 AAACTATTTAGTCCAAATGATGCGATTTACCGAGCATGGAATGTTC-GAAAAATTAG-TC-AACA
1 AAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAG-AAAATT-GCTCGAA-G
* * * * * * * *
35050 GAATAGATCATCTTGTATACTCTCAGGAACCGAAGTTATAAAAGAACTGGTAAATGTTTGGCAAG
63 GAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
** * *
35115 TTCAGAAGTTTGTCCAAGAA-TAA-AGA-AAAGCAATTCTCACATAAATAAGTTT
128 TTCAGAAGTTCATCCAAGAACCAAGAGAGAAA-CAATTCTCACGTAAATAAGTTT
35167 GACAAATTAA
Statistics
Matches: 1203, Mismatches: 223, Indels: 83
0.80 0.15 0.06
Matches are distributed among these distances:
211 32 0.03
212 134 0.11
213 136 0.11
214 204 0.17
215 154 0.13
216 324 0.27
217 126 0.10
218 88 0.07
219 5 0.00
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.27
Consensus pattern (216 bp):
AAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAA
TGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC
AGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
AAAACTTGTTTACAAAATGAC
Found at i:35567 original size:216 final size:216
Alignment explanation
Indices: 35166--36408 Score: 1352
Period size: 216 Copynumber: 5.8 Consensus size: 216
35156 TAAATAAGTT
* ** * *
35166 TGACAAATTAATTT-GACCAAATGATGCGATTTCCAGAGCACGGAATGTTCAAAAAATTGCTCGA
1 TGACAAACT-ATTTAGACCAAATGATGTAATTTCCTGAGCATGGAATGTTCAAAAAATTGCTCGA
** * * *
35230 AGGAATGGATGGTATTGAA-ACGTTAAGGAACCGAAGTTATAAAAGAACTCT-TCAAAGTTTGAC
65 AGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT-TGTAAAAGTTTGAC
* * * * *
35293 TAGTTCGGAAGTTCGTCCAAGAACCAAGAAAGAAACAATTCTCACATAAATCAGTTTTTAATTCA
129 AAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
*
35358 AAGACCAAAACTTATTTACAAAA
194 AAGACCAAAACTTGTTTACAAAA
* * * *
35381 CGACAAACTATTTAGACCAAATGATGTAACTCCCGGAGCATGGAATGTTCAAAAAATTGCTCGAA
1 TGACAAACTATTTAGACCAAATGATGTAATTTCCTGAGCATGGAATGTTCAAAAAATTGCTCGAA
* * *
35446 GGAATTGATCATCTTGAATACTTTAAGGAACCGAAGTTTTAAAAGAACTTGTAAAAATTTGACAA
66 GGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTTTGACAA
* * *
35511 GTTCGAAAGTTCGTCCAAGAACCAAGGGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAT
131 GTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
*
35576 GACAAAAACTTGTTTACAAAA
196 GACCAAAACTTGTTTACAAAA
* * * * *
35597 TGGA-AAACTATTTAGACCAATTGATGCAATTTCCTGAGCATGAAATGTTCAGAAAATTGCTTGA
1 T-GACAAACTATTTAGACCAAATGATGTAATTTCCTGAGCATGGAATGTTCAAAAAATTGCTCGA
* * * * * *
35661 AAGAATGGATCCA-CTTAAATACTTTAAGGAACCGAAATTTTAGAAGAA-TTCATAAAAGTTTGA
65 AGGAATGGAT-CATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTT-GTAAAAGTTTGA
** * *
35724 CAAGTTTAAAAGTTTGTCCAAGAACCAAGAGAGAAACAATTTTCACGTAAATAAGTTTTTAATTC
128 CAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* *
35789 AAAGACAAAAACTTGTGTACAAAA
193 AAAGACCAAAACTTGTTTACAAAA
* * * *
35813 TGACAAACTATTTAGTCCAAATGATGTGATTTACC-GAGCATGGAATGCTT-AGAAAATTGGTCG
1 TGACAAACTATTTAGACCAAATGATGTAATTT-CCTGAGCATGGAATG-TTCAAAAAATTGCTCG
* * * * * * * *
35876 ATGGAATGGATCGTCTTGTATACTCTCAGGAACCGAAGTTATAAAAGAACTCGTAAATGTTTGGC
64 AAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTTTGAC
** * *
35941 AAGTTTAAAAGTTCGTCCAAGAA-TAA-AGAGAAACAATTCTCACGTAAATAAGTTTATAATTCA
129 AAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
36004 AAGACCAAAACTTGTTTACAAAA
194 AAGACCAAAACTTGTTTACAAAA
* * * * * * *
36027 TGACAAACTTTTTAGACTAAATGATGTTATTTCCTGAGCATTG-TTGTTCGAAAAATTACT-GAA
1 TGACAAACTATTTAGACCAAATGATGTAATTTCCTGAGCATGGAATGTTCAAAAAATTGCTCG-A
* * * * * *
36090 AGAAATGGATCATCTTGAACACCTTACGGAACCGAAGTTATAAAAGAAGTCT-TCAAAGTTTGAC
65 AGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT-TGTAAAAGTTTGAC
* * * * * * *
36154 TAGTTCGGAAGTTAGTCCAAAAAGC-A-AGAGAAACAATTTTCATGTAAA-ACAGTTTTTAAATT
129 AAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA-AGTTTTT-AATT
* *
36216 -ATAGACCAAAACTTGTTTATAAAA
192 CAAAGACCAAAACTTGTTTACAAAA
* * * * * * * * *
36240 TAATAAACTATTTAGACCTAATGATGCAATTTCTTGAGCGTGGAGTGTTTAGAAAATTGCTCGAA
1 TGACAAACTATTTAGACCAAATGATGTAATTTCCTGAGCATGGAATGTTCAAAAAATTGCTCGAA
* * * * ** * * *
36305 GGAATGGATTC-TCTTCAATATTTTAAAGAAGCGAAGTTGCAAAAGAAGTCGTAACAGTTTGACA
66 GGAATGGA-TCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTTTGACA
36369 AGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTC
130 AGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTC
36409 GAAAAATTTG
Statistics
Matches: 857, Mismatches: 147, Indels: 47
0.82 0.14 0.04
Matches are distributed among these distances:
212 4 0.00
213 160 0.19
214 179 0.21
215 78 0.09
216 427 0.50
217 9 0.01
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.28
Consensus pattern (216 bp):
TGACAAACTATTTAGACCAAATGATGTAATTTCCTGAGCATGGAATGTTCAAAAAATTGCTCGAA
GGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTTTGACAA
GTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
GACCAAAACTTGTTTACAAAA
Done.