Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013853.1 Kokia drynarioides strain JFW-HI SEQ_128881, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 31218
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1895 original size:19 final size:20

Alignment explanation


    Indices: 1855--1895  Score: 50
    Period size: 19  Copynumber: 2.1  Consensus size: 20

       1845 AAATAATAGA

                          *     
       1855 AATGAACATAGAATTAAATT
          1 AATGAACATAGAATGAAATT

                                 
       1875 AATGAA-ATAGAA-GAAACTT
          1 AATGAACATAGAATGAAA-TT

              
       1894 AA
          1 AA

       1896 ATTGTATAGC


Statistics
Matches: 19,  Mismatches: 1, Indels: 3
        0.83            0.04        0.13

Matches are distributed among these distances:
  18    3  0.16
  19   10  0.53
  20    6  0.32

ACGTcount: A:0.59, C:0.05, G:0.12, T:0.24


Consensus pattern (20 bp):   
AATGAACATAGAATGAAATT

Found at i:24453 original size:17 final size:18

Alignment explanation


    Indices: 24433--24471  Score: 62
    Period size: 18  Copynumber: 2.2  Consensus size: 18

      24423 AGATGTACTA

                           *  
      24433 ACAAATG-AAATGCAGTG
          1 ACAAATGAAAATGCAATG

                              
      24450 ACAAATGAAAATGCAATG
          1 ACAAATGAAAATGCAATG

                
      24468 ACAA
          1 ACAA

      24472 CTAAATAAAA


Statistics
Matches: 20,  Mismatches: 1, Indels: 1
        0.91            0.05        0.05

Matches are distributed among these distances:
  17    7  0.35
  18   13  0.65

ACGTcount: A:0.54, C:0.13, G:0.18, T:0.15


Consensus pattern (18 bp):   
ACAAATGAAAATGCAATG

Found at i:25333 original size:20 final size:20

Alignment explanation


    Indices: 25308--25347  Score: 62
    Period size: 20  Copynumber: 2.0  Consensus size: 20

      25298 GAGGAAAGAC

                     *          
      25308 AGGGAACTCTGGCAGTGGAT
          1 AGGGAACTCAGGCAGTGGAT

                  *             
      25328 AGGGAATTCAGGCAGTGGAT
          1 AGGGAACTCAGGCAGTGGAT

      25348 TTGGACTCAT


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  20   18  1.00

ACGTcount: A:0.28, C:0.12, G:0.40, T:0.20


Consensus pattern (20 bp):   
AGGGAACTCAGGCAGTGGAT
Done.