genome.fa.s13856.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013856.1 Kokia drynarioides strain JFW-HI SEQ_128884, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42688

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
682--725	23	2.0	22	86	4	61	52	2	2	43	1.26
5466--5500	15	2.3	15	100	0	70	45	5	8	40	1.58
5426--5554	64	1.9	67	84	10	176	46	4	8	40	1.55
5481--5608	54	2.4	54	93	2	213	47	3	10	38	1.56
6063--6256	97	2.0	97	80	6	214	37	12	18	31	1.88
6647--6833	30	6.3	30	78	15	135	35	2	26	35	1.71
8743--8846	6	18.0	6	75	11	83	53	2	0	43	1.15
8761--8874	11	10.0	11	72	14	79	56	4	0	39	1.19
8743--8874	17	7.4	17	74	13	113	54	3	0	41	1.18
8760--8871	58	1.9	58	83	3	145	54	4	0	41	1.20
8773--8854	41	2.0	41	85	4	112	53	4	0	41	1.22
9405--9597	96	2.0	97	83	7	241	38	11	18	31	1.87
9862--10029	59	2.9	59	82	6	191	37	3	22	36	1.72
9943--10196	88	2.9	88	82	8	279	37	2	24	36	1.68
9896--10287	29	13.3	29	71	17	222	36	3	24	36	1.71
9979--10287	59	5.3	58	75	13	183	37	2	24	35	1.71
10033--10285	30	8.6	29	74	11	178	36	2	24	35	1.70
11160--11693	260	2.1	260	97	0	1014	30	14	18	36	1.91
12322--12408	17	5.1	17	78	0	84	57	5	1	35	1.30
12753--13192	206	2.1	208	84	6	563	21	22	19	36	1.95
13037--13315	123	2.3	123	94	0	477	21	21	18	37	1.94
12830--13799	332	2.9	329	89	2	1482	22	21	18	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13369--13644	123	2.3	120	88	1	390	21	20	19	38	1.94
14223--14329	50	2.2	50	86	1	144	16	26	20	36	1.94
23085--23354	30	9.3	28	75	8	202	33	4	26	35	1.76
23085--23343	59	4.4	58	83	7	260	33	3	25	37	1.74
23114--23325	117	1.8	117	84	8	297	34	4	26	34	1.76
23356--23463	29	3.7	29	75	13	103	38	4	26	29	1.76
23349--23499	59	2.5	59	80	4	160	40	3	26	29	1.74
24307--24355	21	2.5	19	86	6	62	34	12	2	51	1.51
25276--25352	17	4.5	17	81	0	91	57	7	1	33	1.36
26702--26979	110	2.6	110	81	5	282	35	8	19	36	1.83
28898--28950	3	17.7	3	88	0	79	33	0	5	60	1.20
29634--29671	5	7.4	5	90	3	58	76	0	0	23	0.79
29638--29670	15	2.2	15	100	0	66	75	0	0	24	0.80
30037--30086	4	12.2	4	87	4	55	0	24	0	76	0.80
34182--34218	19	1.9	19	88	0	56	35	8	13	43	1.74
35862--36193	30	11.3	29	76	11	236	35	24	5	34	1.78
35862--36102	59	4.1	59	78	10	217	36	22	4	37	1.74
35901--36178	59	4.8	59	73	12	143	37	25	5	32	1.78
35911--36203	116	2.5	114	77	11	276	36	24	5	33	1.79
36195--36260	29	2.2	31	86	5	91	31	18	7	42	1.78

Tables:   1

The End!