genome.fa.s13858.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013858.1 Kokia drynarioides strain JFW-HI SEQ_128886, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95422

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4103--4159	3	19.0	3	77	0	60	56	3	1	38	1.27
4106--4159	21	2.6	21	87	0	81	55	3	1	38	1.28
5220--5450	30	7.8	30	70	10	154	35	21	1	41	1.63
5219--5458	59	4.1	59	81	3	279	35	22	1	40	1.64
5443--5596	60	2.7	58	82	8	172	35	27	4	32	1.77
5435--5587	29	5.2	30	67	19	90	37	27	4	30	1.77
5435--5596	58	2.8	58	80	6	186	37	26	4	32	1.76
5435--5596	30	5.5	30	69	18	108	37	26	4	32	1.76
23365--23746	64	6.1	62	83	7	463	25	17	16	40	1.90
23320--23746	123	3.4	125	84	5	535	26	17	16	39	1.91
27517--27551	3	11.3	3	93	6	61	2	31	0	65	1.07
28035--28158	64	1.9	64	98	0	239	31	16	20	31	1.95
46319--46383	31	2.1	31	88	0	94	61	18	6	13	1.52
46772--46808	15	2.2	18	86	13	53	59	5	2	32	1.34
47956--47992	19	1.9	19	100	0	74	43	0	21	35	1.53
48164--48228	23	2.6	25	81	16	82	78	0	13	7	0.95
48182--48224	18	2.5	17	89	10	70	88	0	9	2	0.60
50600--50628	14	2.0	15	93	6	51	68	0	0	31	0.89
59898--59978	41	2.0	41	100	0	162	46	16	9	27	1.78
64590--64623	10	3.3	10	88	8	50	20	2	5	70	1.21
64607--64635	14	2.0	15	93	6	51	20	3	0	75	0.94
64910--64968	30	1.9	31	89	3	93	20	33	0	45	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65361--65399	17	2.2	17	86	4	51	35	5	0	58	1.20
67593--67700	56	1.9	56	96	0	198	32	16	17	33	1.93
68731--68813	17	4.8	17	77	4	76	49	3	1	45	1.27
68780--68825	24	1.9	24	90	0	74	52	0	0	47	1.00
68780--68837	24	2.5	24	82	2	73	50	3	0	46	1.18
68810--68847	17	2.2	17	90	0	58	52	5	0	42	1.24
71309--71360	3	17.3	3	91	0	86	30	36	1	30	1.69
81848--81875	2	14.0	2	100	0	56	50	0	50	0	1.00
89129--89581	223	2.0	223	98	0	879	30	16	22	30	1.96

Tables:   1

The End!