genome.fa.s13862.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013862.1 Kokia drynarioides strain JFW-HI SEQ_128890, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  160701

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7935--8027	42	2.3	41	83	3	107	58	6	3	32	1.40
7935--8027	41	2.3	42	81	7	102	58	6	3	32	1.40
15828--15857	3	10.0	3	100	0	60	33	0	0	66	0.92
19402--19534	70	1.9	67	86	4	185	36	11	9	42	1.74
20200--20236	16	2.3	17	86	9	51	75	2	2	18	1.04
20433--20479	22	2.0	24	84	8	62	38	4	0	57	1.18
22833--22878	22	2.1	22	88	4	67	21	2	4	71	1.14
29357--29417	2	30.5	2	100	0	122	49	0	0	50	1.00
30366--30432	30	2.2	30	78	5	73	40	10	16	32	1.82
31450--31656	104	2.0	104	93	0	351	35	11	18	34	1.87
31988--32068	31	2.6	30	80	9	90	34	12	16	37	1.86
36875--36904	15	2.1	15	93	6	53	36	0	0	63	0.95
44058--44106	24	2.0	24	88	0	71	77	4	2	16	1.01
53206--53312	43	2.5	42	76	13	101	39	0	6	53	1.33
62121--62166	21	2.2	20	85	11	58	15	6	2	76	1.09
68544--68582	20	2.0	20	85	10	53	51	5	2	41	1.38
70424--70453	3	10.0	3	100	0	60	66	0	33	0	0.92
77218--77245	4	7.0	4	100	0	56	25	0	25	50	1.50
80378--80453	30	2.7	30	80	13	81	35	10	13	40	1.79
80386--80454	30	2.4	30	83	11	90	34	10	13	42	1.77
80603--80658	29	1.9	29	82	7	69	46	8	10	33	1.70
81920--82087	91	1.8	92	82	6	216	36	15	7	39	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82120--82248	10	13.7	9	68	16	57	63	0	3	31	1.18
82162--82221	19	3.1	19	78	2	66	66	1	5	26	1.21
82601--82634	12	3.1	11	88	12	52	26	0	0	73	0.83
82607--82634	12	2.3	12	100	0	56	21	0	0	78	0.75
83158--83219	22	2.8	22	75	0	70	45	8	0	46	1.32
83746--83806	30	2.1	29	85	11	81	6	3	19	70	1.24
83772--83838	22	3.1	22	80	4	73	13	1	16	68	1.28
83772--83844	21	3.5	21	77	3	67	12	2	17	67	1.34
83823--83920	12	8.6	12	74	15	82	5	8	21	65	1.39
83829--83920	32	2.8	33	85	6	123	4	8	21	65	1.38
83835--83920	23	3.8	23	81	6	113	4	9	20	65	1.40
83938--83980	23	1.9	23	85	4	61	23	6	6	62	1.45
85338--85380	16	2.6	17	82	7	54	53	4	0	41	1.21
89918--90113	105	1.9	105	81	4	243	38	9	13	37	1.78
91866--91910	18	2.6	17	79	6	54	55	2	4	37	1.32
98080--98135	25	2.3	24	81	9	69	50	3	0	46	1.19
98304--99792	216	6.9	215	81	8	1511	27	18	13	40	1.88
98342--99792	630	2.3	631	83	6	1787	28	18	13	40	1.88
103705--103730	3	8.7	3	100	0	52	65	0	34	0	0.93
105669--105703	15	2.4	15	90	4	54	25	17	0	57	1.40
109873--109917	3	15.0	3	90	0	72	28	0	37	33	1.58
114415--114441	11	2.5	11	100	0	54	0	7	0	92	0.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114661--114696	17	2.0	19	89	10	58	25	5	27	41	1.77
122213--122401	105	1.8	105	97	0	360	36	26	20	16	1.93
125601--125647	5	9.4	5	95	0	85	19	2	40	38	1.63
125949--126052	23	4.4	23	82	7	120	46	23	21	9	1.80
128818--128884	33	2.0	33	97	0	125	40	11	10	37	1.77
129509--129789	99	2.8	99	95	0	490	31	24	10	32	1.90
129723--129841	58	2.1	58	83	3	150	38	19	10	31	1.85
135164--135221	17	3.5	15	84	13	62	41	0	5	53	1.23
135179--135251	28	2.6	28	84	6	85	43	1	2	52	1.24
135179--135252	6	12.8	6	71	8	55	44	1	2	51	1.24
135197--135252	17	3.2	17	84	2	67	46	1	1	50	1.22
135164--135267	34	3.0	34	81	2	100	44	1	3	50	1.31
137172--137315	30	4.9	30	72	17	122	31	27	4	36	1.78
137172--137313	58	2.4	59	85	3	180	31	28	4	35	1.76
139782--139813	6	5.5	6	96	3	57	87	0	12	0	0.54
139709--139850	77	1.9	75	94	2	248	53	9	19	16	1.71
142594--142657	6	10.8	6	93	3	112	48	15	0	35	1.46
152841--152866	6	4.3	6	100	0	52	84	0	15	0	0.62
154609--154651	18	2.5	16	82	14	50	46	6	0	46	1.30
157285--157459	55	3.1	57	78	10	180	31	16	18	33	1.93
157432--157658	61	3.7	61	82	6	282	28	17	13	40	1.87
157432--157657	62	3.7	62	82	5	282	28	17	13	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157362--157657	123	2.5	119	81	9	325	28	17	14	39	1.89
157573--157732	87	1.8	88	89	4	252	33	13	12	40	1.82

Tables:   1

The End!