genome.fa.s13868.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013868.1 Kokia drynarioides strain JFW-HI SEQ_128896, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  221844

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2704--2747	23	1.9	23	86	9	63	45	18	18	18	1.86
5083--5112	10	3.0	10	95	0	51	70	0	26	3	1.03
5202--5251	20	2.4	21	81	15	52	42	10	0	48	1.37
6590--6632	2	21.5	2	95	0	77	53	46	0	0	1.00
7180--7262	35	2.4	34	84	6	105	34	22	19	22	1.96
7180--7268	34	2.6	36	83	5	112	34	22	20	22	1.96
7136--7369	109	2.1	108	78	6	240	37	20	18	23	1.94
11196--11622	57	7.5	57	73	9	205	36	3	26	33	1.73
11248--11612	29	12.8	28	75	9	215	36	2	25	35	1.71
11426--11617	56	3.4	57	80	13	184	39	2	23	35	1.67
14778--14809	16	1.9	17	93	6	57	50	12	3	34	1.56
20457--20560	55	1.9	55	89	0	163	49	14	6	29	1.69
20457--20579	55	2.2	55	84	2	158	47	16	6	29	1.71
20534--20646	34	3.3	34	80	7	122	47	15	8	27	1.75
21897--21953	3	19.0	3	81	0	51	24	40	5	29	1.77
30643--30668	2	13.0	2	100	0	52	50	0	50	0	1.00
40151--40210	29	2.0	30	93	3	104	46	16	8	28	1.76
41989--42198	25	8.4	25	87	0	249	31	8	18	40	1.81
41909--42037	64	2.0	64	86	0	177	31	6	20	41	1.78
42650--42692	21	2.0	22	82	13	54	48	2	16	32	1.58
43043--43072	8	3.6	8	95	4	51	50	0	26	23	1.50
51233--51290	21	2.8	21	89	0	98	31	15	18	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74693--74738	24	1.9	24	90	0	74	45	17	6	30	1.73
83313--83345	11	3.0	11	100	0	66	27	0	45	27	1.54
98027--98066	20	2.1	19	85	4	53	45	0	15	40	1.46
98045--98124	31	2.6	30	80	5	90	41	7	20	31	1.80
102376--102421	23	2.0	23	100	0	92	47	0	8	43	1.34
102381--102431	23	2.2	23	89	0	75	47	3	3	45	1.40
107654--107712	30	1.9	30	86	3	82	20	40	0	38	1.53
108326--108365	16	2.6	16	84	4	55	37	10	0	52	1.35
111537--111603	31	2.2	31	83	0	80	32	13	13	40	1.83
112752--112793	16	2.7	15	85	7	57	38	0	2	59	1.10
115301--115332	2	16.0	2	100	0	64	50	0	0	50	1.00
119031--119087	20	3.0	20	74	23	59	49	0	1	49	1.11
119040--119119	29	2.7	30	86	7	110	48	0	1	50	1.08
119040--119119	30	2.7	31	88	5	112	48	0	1	50	1.08
120223--120295	29	2.4	30	93	4	121	46	1	0	52	1.09
120257--120298	20	2.0	22	90	9	70	52	0	0	47	1.00
126606--126639	4	8.0	4	87	12	50	50	2	0	47	1.16
126600--126639	12	3.0	13	85	14	55	47	5	2	45	1.38
127814--127861	25	2.0	24	84	11	64	54	4	0	41	1.20
128121--128150	6	5.0	6	100	0	60	50	33	0	16	1.46
141799--141855	29	1.9	30	89	3	89	31	1	8	57	1.39
141799--141858	30	2.0	29	87	3	84	31	1	10	56	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152514--152557	22	1.9	24	86	9	65	20	13	9	56	1.64
153853--153893	21	2.0	21	85	0	55	24	19	17	39	1.92
158690--158824	67	2.0	68	89	1	209	28	11	12	47	1.77
171647--171691	3	15.0	3	95	0	81	0	33	2	64	1.06
171935--171961	2	13.5	2	100	0	54	51	0	0	48	1.00
177390--177467	18	4.3	18	91	0	120	20	19	26	33	1.96
183726--183818	9	10.9	9	67	19	56	33	2	1	63	1.13
183724--183797	17	4.4	16	77	15	60	35	1	1	62	1.12
183742--183815	8	8.8	9	74	14	52	32	2	0	64	1.07
183744--183817	25	3.0	26	80	9	75	32	2	0	64	1.07
185349--185391	21	2.1	20	87	12	61	72	0	0	27	0.85
190806--190952	67	2.2	67	82	2	170	35	18	23	22	1.96
201137--201196	30	2.0	30	90	0	93	31	8	18	41	1.80
201749--201776	3	9.3	3	100	0	56	67	0	0	32	0.91
205256--205281	13	2.0	13	100	0	52	23	23	15	38	1.92
216846--216893	24	2.0	24	87	0	69	25	18	27	29	1.98
216850--216918	25	2.8	26	78	10	81	21	14	28	34	1.93
221707--221767	26	2.4	25	73	13	61	54	6	11	27	1.61

Tables:   1

The End!