genome.fa.s13869.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013869.1 Kokia drynarioides strain JFW-HI SEQ_128897, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  170848

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10468--10518	22	2.3	23	83	10	61	39	7	1	50	1.42
21157--21466	29	10.6	30	77	6	244	36	4	23	35	1.76
21196--21446	118	2.1	117	85	0	322	35	5	24	35	1.78
23241--23875	208	3.0	208	84	3	792	23	22	16	37	1.93
23927--24146	39	5.7	39	72	7	144	23	21	31	23	1.98
24117--24338	39	5.7	39	73	10	184	26	21	29	23	1.99
24057--24360	78	3.9	78	82	2	353	26	21	29	23	1.99
24595--24783	49	3.8	49	80	3	200	19	32	16	31	1.94
25733--25842	6	18.3	6	75	17	88	0	17	1	80	0.79
25754--25842	11	8.3	11	83	12	80	0	15	2	82	0.78
25735--25838	29	3.5	27	79	18	100	0	17	1	80	0.80
25733--25838	35	3.0	33	81	16	101	0	16	1	81	0.79
31787--32132	170	2.0	170	96	0	638	28	21	20	29	1.98
34191--34479	29	9.9	30	78	7	267	37	3	25	34	1.73
34197--34479	59	4.9	59	80	9	278	37	3	25	33	1.73
34161--34479	59	5.4	58	79	7	263	37	3	24	34	1.72
36443--36479	17	2.2	17	90	9	58	16	5	2	75	1.10
37821--37898	38	2.1	38	97	0	147	41	19	14	25	1.89
48485--48529	22	2.0	22	91	0	72	42	4	15	37	1.67
49263--49302	18	2.1	18	86	9	53	15	12	30	42	1.83
50646--50671	12	2.2	12	100	0	52	53	0	0	46	1.00
51102--51135	18	1.9	18	88	5	52	70	0	8	20	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54902--54991	44	2.0	44	89	0	135	44	3	10	42	1.54
56194--56328	50	2.6	51	79	9	143	37	11	14	37	1.82
56758--56817	23	2.6	23	81	7	59	16	1	6	75	1.10
56817--56877	23	2.6	23	84	7	79	8	26	22	42	1.81
61959--62035	21	3.7	21	75	6	75	31	23	12	32	1.92
63793--63835	21	2.0	22	81	4	52	27	13	2	55	1.51
67946--68048	41	2.4	44	80	12	131	17	11	36	33	1.86
67957--68069	41	2.8	41	86	0	154	17	14	36	31	1.90
68020--68176	53	3.0	53	83	0	197	19	16	33	29	1.94
68711--68797	29	3.0	29	87	0	120	24	18	13	43	1.86
74442--74484	21	2.0	21	95	0	77	48	6	23	20	1.73
76020--76073	20	2.6	21	80	16	60	46	0	12	40	1.42
78229--78465	52	4.6	52	90	1	370	36	24	13	26	1.92
88710--88760	21	2.4	21	86	0	66	64	3	0	31	1.11
88969--89016	24	2.0	24	95	0	87	43	0	0	56	0.99
88974--89028	18	3.0	19	78	7	60	50	0	0	49	1.00
89004--89029	6	4.3	6	100	0	52	69	0	0	30	0.89
90360--90418	30	2.0	28	84	12	75	59	8	6	25	1.51
101955--102034	22	3.7	21	78	5	79	45	21	22	11	1.83
101949--102035	44	2.0	44	86	4	122	44	20	22	11	1.84
102561--102598	19	2.0	19	85	10	51	21	13	5	60	1.52
104573--104601	14	2.1	14	100	0	58	34	6	0	58	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108869--108910	14	3.1	14	77	16	52	50	2	0	47	1.14
110613--110796	72	2.6	72	93	0	307	55	16	5	22	1.61
113776--113813	11	3.5	11	82	10	51	63	0	31	5	1.17
116979--117028	22	2.3	22	76	13	57	46	18	24	12	1.82
118442--118484	12	3.7	11	78	9	50	60	4	0	34	1.17
120856--120924	28	2.3	30	90	7	106	39	14	10	36	1.80
123156--123204	7	7.0	7	100	0	98	28	0	14	57	1.38
136040--136091	24	2.1	25	82	3	61	48	11	7	32	1.68
140076--140124	21	2.3	20	80	10	53	63	2	4	30	1.24
142546--142648	51	2.0	51	90	3	163	30	21	13	34	1.92
145748--145847	46	2.2	46	100	0	200	40	33	4	23	1.73
148603--148640	19	2.0	19	85	10	51	60	5	13	21	1.52
149085--149159	28	2.7	28	87	0	105	13	21	16	49	1.79
151700--151889	94	2.0	96	87	7	280	50	3	10	36	1.54
151880--151917	16	2.4	16	90	0	58	52	2	2	42	1.29
162122--162281	78	2.1	78	100	0	320	45	13	14	26	1.82
165179--165402	24	9.3	24	74	0	151	21	25	16	36	1.94
165182--165343	48	3.4	48	84	0	225	20	25	17	36	1.94
165182--165385	48	4.2	48	80	0	210	20	25	17	36	1.94
165267--165402	72	1.9	72	87	3	202	22	25	16	35	1.95
165870--165909	21	2.0	21	90	5	64	40	25	0	35	1.56

Tables:   1

The End!