Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013870.1 Kokia drynarioides strain JFW-HI SEQ_128898, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1766
ACGTcount: A:0.37, C:0.11, G:0.13, T:0.36

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:1437 original size:63 final size:63

Alignment explanation


    Indices: 1359--1484  Score: 243
    Period size: 63  Copynumber: 2.0  Consensus size: 63

       1349 GTAATTTATA

                                                                           
       1359 ATAAAATATTTTCTCTAATCTCCATCTTGTGACACATCTTTCGGGTAAGAAATACATACTATT
          1 ATAAAATATTTTCTCTAATCTCCATCTTGTGACACATCTTTCGGGTAAGAAATACATACTATT

                                                     *                     
       1422 ATAAAATATTTTCTCTAATCTCCATCTTGTGACACATCTTTTGGGTAAGAAATACATACTATT
          1 ATAAAATATTTTCTCTAATCTCCATCTTGTGACACATCTTTCGGGTAAGAAATACATACTATT

       1485 GATTTAATGG


Statistics
Matches: 62,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  63   62  1.00

ACGTcount: A:0.33, C:0.18, G:0.10, T:0.39


Consensus pattern (63 bp):   
ATAAAATATTTTCTCTAATCTCCATCTTGTGACACATCTTTCGGGTAAGAAATACATACTATT
Done.