genome.fa.s13872.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013872.1 Kokia drynarioides strain JFW-HI SEQ_128900, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  245807

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13160--13188	3	9.7	3	100	0	58	68	0	0	31	0.89
20361--20413	19	2.7	20	76	5	63	56	5	13	24	1.58
30816--30863	25	1.9	25	83	8	62	56	12	12	18	1.67
47473--47520	11	4.2	11	80	15	53	35	0	0	64	0.94
47465--47519	24	2.2	25	81	9	69	36	1	0	61	1.06
50350--50390	22	1.9	22	85	5	57	21	14	7	56	1.63
62907--62945	20	2.0	20	89	0	60	2	30	2	64	1.21
63652--63723	21	3.4	21	81	7	83	33	27	9	29	1.89
64391--64492	36	2.8	36	83	5	134	24	24	15	35	1.94
70813--70854	21	2.1	20	86	8	59	35	21	9	33	1.86
70822--70871	21	2.4	21	93	0	82	30	22	8	40	1.82
92703--92769	32	2.1	32	85	0	89	28	0	22	49	1.50
92781--92868	45	2.0	45	88	2	133	22	0	32	44	1.53
93341--93385	22	2.0	22	100	0	90	17	8	17	55	1.67
94727--94944	109	2.0	109	98	0	418	36	18	12	32	1.88
96056--96135	32	2.4	32	87	8	106	48	11	6	33	1.64
98031--98116	36	2.4	36	86	7	113	26	50	3	19	1.64
99645--99732	45	2.0	45	88	2	133	45	32	0	21	1.52
99645--99744	44	2.3	44	86	6	132	47	33	0	20	1.50
111973--112032	20	3.0	20	92	7	95	10	6	5	78	1.08
113506--113557	11	4.9	11	81	11	56	82	0	15	1	0.75
113503--113557	16	3.4	15	81	16	65	83	0	14	1	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123892--124643	379	2.0	378	93	1	1274	29	23	15	30	1.96
125941--126060	36	3.5	36	70	23	89	61	1	10	26	1.37
125990--126029	21	1.9	21	84	0	53	72	0	7	20	1.08
126856--126893	3	13.0	3	94	5	69	31	0	0	68	0.90
127536--127977	51	8.8	50	68	14	169	42	2	10	44	1.52
127310--127969	148	4.4	150	93	2	1048	42	3	10	43	1.55
129012--129481	238	2.0	237	93	0	814	35	7	15	41	1.75
130298--130330	15	2.1	16	88	5	50	0	15	15	69	1.19
131059--131616	45	12.9	45	82	8	542	24	15	25	33	1.95
131062--131616	179	3.2	170	81	10	616	24	15	25	33	1.95
132740--132787	21	2.3	21	78	7	53	54	4	35	6	1.45
136916--136952	18	2.1	18	89	0	56	2	13	0	83	0.74
136917--136956	12	3.2	12	86	13	55	2	15	0	82	0.77
137303--137332	14	2.2	13	94	5	51	40	10	20	30	1.85
137936--137962	11	2.5	11	100	0	54	7	25	25	40	1.82
139150--139199	23	2.2	23	92	0	82	32	12	22	34	1.90
142032--142058	14	1.9	14	100	0	54	81	0	18	0	0.69
162747--162791	8	5.5	8	86	5	63	68	0	4	26	1.08
162743--162795	25	2.2	25	89	3	81	69	0	3	26	1.05
162747--162791	17	2.8	16	86	6	63	68	0	4	26	1.08
168421--168478	18	3.1	18	79	16	55	37	1	3	56	1.26
177092--177120	11	2.5	12	94	5	51	6	6	6	79	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
193286--193330	22	2.0	22	95	0	81	37	13	15	33	1.86
193628--193666	3	13.0	3	94	0	69	69	0	30	0	0.89
200868--200906	9	4.4	9	83	6	53	71	2	0	25	0.98
200872--200906	8	4.1	8	89	10	52	71	2	0	25	1.00
200868--200906	17	2.2	18	90	4	62	71	2	0	25	0.98
201506--201557	13	4.0	13	82	5	61	51	1	0	46	1.12
201516--201556	9	4.7	9	84	3	57	51	2	0	46	1.14
217638--217708	26	2.9	24	80	12	72	36	26	14	22	1.92
220201--220244	19	2.3	19	96	0	79	15	27	9	47	1.76
235594--235628	9	3.9	9	96	0	61	11	11	14	62	1.54
237568--237600	17	1.9	17	93	0	57	75	3	0	21	0.93
239448--239872	195	2.2	195	85	6	578	30	17	24	27	1.97
244390--244764	192	2.0	192	97	0	714	25	11	17	45	1.82

Tables:   1

The End!