Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001388.1 Kokia drynarioides strain JFW-HI SEQ_112866, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2630
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37


Found at i:2083 original size:28 final size:28

Alignment explanation


    Indices: 2032--2086  Score: 83
    Period size: 28  Copynumber: 2.0  Consensus size: 28

       2022 TGTTCACTTA

                           *  **        
       2032 TCCCAGATTGGTACATAAGGTTTTTTTG
          1 TCCCAGATTGGTACACAAACTTTTTTTG

                                       
       2060 TCCCAGATTGGTACACAAACTTTTTTT
          1 TCCCAGATTGGTACACAAACTTTTTTT

       2087 TTCCATCTAT


Statistics
Matches: 24,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  28   24  1.00

ACGTcount: A:0.24, C:0.18, G:0.16, T:0.42


Consensus pattern (28 bp):   
TCCCAGATTGGTACACAAACTTTTTTTG
Done.