genome.fa.s13882.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013882.1 Kokia drynarioides strain JFW-HI SEQ_128910, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  183984

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110--1195	98	11.2	98	88	2	1275	38	18	25	17	1.93
82--1131	49	21.6	49	72	10	746	38	19	25	16	1.93
110--1195	195	5.6	195	85	3	1273	38	18	25	17	1.93
1420--1563	39	3.7	39	89	0	198	20	29	22	27	1.98
1408--1585	78	2.3	78	74	3	187	22	32	19	25	1.97
2773--2821	16	3.1	15	85	8	62	61	0	2	36	1.08
2774--2816	18	2.3	19	88	4	61	58	0	2	39	1.11
3528--3844	29	10.8	30	74	11	219	37	23	1	37	1.66
3539--3878	58	5.8	58	80	10	272	36	24	2	37	1.68
3905--3986	28	2.9	29	83	7	96	34	26	6	32	1.81
6769--6826	12	4.8	12	72	6	55	68	18	5	6	1.31
7387--7456	11	6.0	11	69	18	52	65	4	1	28	1.20
12211--12240	5	6.0	5	96	0	51	56	23	0	20	1.42
19003--19042	16	2.3	18	87	8	57	47	2	0	50	1.14
21166--21212	23	2.0	23	87	0	67	55	2	4	38	1.31
21788--21819	6	5.3	6	96	0	55	12	34	0	53	1.39
22070--22100	14	2.2	14	94	0	53	51	0	0	48	1.00
22195--22234	20	2.0	20	85	9	55	65	12	0	22	1.26
31538--31588	6	8.5	6	91	0	84	50	1	29	17	1.57
39133--39172	18	2.3	17	95	4	71	40	25	20	15	1.90
45944--46000	22	2.6	22	71	10	55	63	1	0	35	1.05
45988--46025	20	1.9	19	89	5	58	36	2	5	55	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47300--47342	19	2.2	20	83	4	52	51	2	4	41	1.35
55944--55988	21	2.1	21	83	0	54	64	0	4	31	1.13
57109--57165	29	1.9	30	85	3	80	33	3	10	52	1.53
58542--58574	17	1.9	17	88	11	50	57	0	0	42	0.98
62955--63073	63	1.9	62	82	1	148	31	21	28	18	1.97
68012--68047	13	2.6	14	82	8	56	55	0	0	44	0.99
72778--72815	18	2.1	19	90	5	60	34	0	2	63	1.09
74478--74502	8	3.1	8	100	0	50	24	0	0	76	0.80
77940--77978	9	4.2	9	83	6	51	28	7	17	46	1.76
79641--79681	21	2.0	21	95	0	73	58	4	2	34	1.32
81952--81977	7	3.7	7	100	0	52	30	23	15	30	1.95
82002--82079	40	1.9	41	84	7	106	48	28	2	20	1.62
85124--85152	8	3.6	8	100	0	58	37	24	0	37	1.56
88084--88118	17	2.1	17	89	10	54	71	0	0	28	0.86
88779--88842	26	2.5	26	100	0	128	35	18	3	42	1.66
89100--89137	19	2.0	20	89	5	60	5	28	0	65	1.14
90250--90296	6	7.8	6	90	0	76	10	53	19	17	1.72
90250--90298	18	2.7	18	96	0	89	10	51	22	16	1.74
99996--100375	210	1.8	210	86	4	561	32	12	19	35	1.89
103061--103100	20	2.0	20	85	9	55	32	2	0	65	1.06
116827--116869	21	2.0	21	86	0	59	13	2	9	74	1.16
116827--116859	11	3.1	11	86	8	50	12	0	12	75	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117047--117078	9	3.4	10	87	12	50	25	0	9	65	1.22
117232--117363	59	2.2	60	85	4	169	40	18	14	25	1.89
129418--129484	29	2.3	29	84	7	82	65	7	2	23	1.32
135937--136002	30	2.2	31	89	5	100	42	4	0	53	1.21
136053--136115	33	1.9	33	100	0	126	41	25	11	22	1.86
136413--136499	43	2.0	43	95	4	158	57	26	4	11	1.53
140344--140395	26	2.0	26	84	0	68	48	5	11	34	1.63
143662--143742	41	2.0	41	92	4	137	33	9	13	43	1.77
149285--149323	13	2.8	13	84	7	51	84	7	5	2	0.84
154712--154739	3	9.3	3	100	0	56	0	0	32	67	0.91
155503--155533	15	2.1	15	93	0	53	38	0	3	58	1.15
155934--155994	24	2.5	24	74	7	61	62	1	3	32	1.21
156320--156367	22	2.2	22	88	7	71	62	12	8	16	1.53
157546--157594	6	8.2	6	88	0	71	30	4	18	46	1.67
164020--164275	128	2.0	128	99	0	503	42	5	3	48	1.40
167783--167822	19	2.0	20	90	4	64	62	0	0	37	0.95
167788--167831	19	2.4	18	88	11	63	68	0	0	31	0.90
167907--167937	2	15.5	2	93	0	53	45	0	3	51	1.17
172571--172616	20	2.3	19	82	10	56	32	6	19	41	1.77
175176--175340	89	1.9	89	88	2	251	34	9	28	27	1.88
177584--177614	2	15.5	2	100	0	62	51	0	0	48	1.00
177882--177963	30	3.0	27	80	19	91	37	0	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178830--178879	22	2.3	22	79	6	57	60	2	2	36	1.20
181432--181595	30	5.6	29	82	6	177	39	3	20	36	1.71
181432--181601	59	2.9	58	82	2	160	37	3	22	36	1.71
183921--183984	23	2.7	23	80	9	67	15	21	17	45	1.85

Tables:   1

The End!