Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013887.1 Kokia drynarioides strain JFW-HI SEQ_128915, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3156
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.27
Found at i:667 original size:216 final size:216
Alignment explanation
Indices: 1--3156 Score: 4006
Period size: 216 Copynumber: 14.6 Consensus size: 216
*
1 TCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
* * * *
66 CCAAATGATGCGATTTCTCTAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGAATCGTCTTG
66 CCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCGTCTTG
* * * *
131 AATACTTTAAGGATCTAAAGTTATGAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCATCC
131 AATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
196 AAGAACAAAGAGAGAAACAAT
196 AAGAACAAAGAGAGAAACAAT
* *
217 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTGGTTTACAAAATGACAAACTATTTAGA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
* * * * ** * *
282 CCAAGTGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGCTTTAAA-AATGGATCTTATTG
66 CCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCGTCTTG
* * ** * * * *
346 AATACTTTAGGGAACTGAAGTTAAAAAATAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCC
131 AATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
411 AAGAACAAAGAGAGAAACAAT
196 AAGAACAAAGAGAGAAACAAT
* * * **
432 TCTCACGTAAATAAGTTTTTACTTCAACGACCAAAACTTGTTTCCAAAACAACAAACTATTTAGA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
* * * ** *
497 CCAAATGATGTGATTTGCCGAGGATGGAAAATTCGAAAAACTGCT-GAAATGAATGGATCGTCTT
66 CCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAA-GAATGGATCGTCTT
* *
561 GAATACTTTAAGGATCCCAAGTTATAAAAGAA-TGAGTAAAAGTTTGACAGGTTCGGAAGTTCGT
130 GAATACTTTAAGGATCCAAAGTTATAAAAGAACT-AGTAAAAGTTTGACAAGTTCGGAAGTTCGT
625 CCAAGAACAAAGAGAGAAACAAT
194 CCAAGAACAAAGAGAGAAACAAT
* * * * *
648 TCTCACATAAATAAGTTTTTAACTCAAAGACCAGAAGTTGTTTGCTAAATGACAAACTATTTAGA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
* * * *
713 CCAAATGACGCGATTTCCCGAGCATGGAATATTCGAAAAATTGCTCGAAGGAATGGATTGTCTTG
66 CCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCGTCTTG
*
778 AATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGGTTGACAAGTTCGGAAGTTCGTCC
131 AATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* *
843 AAGAATAAAAAGAGAAACAAT
196 AAGAACAAAGAGAGAAACAAT
* * * *
864 TCTCACGTAAATAAGATTTTAATTGAAAGACCAAAACTTGTTTACAAAATGACAAAATATTTAGA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
* * * * * * * *
929 CCAAGTGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGCTCTAAAAAATGGATCTTGTTG
66 CCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCGTCTTG
* * * * * * * * *
994 AATACTTTAGGGAACTAAAGTTAAAAAATAACTAGTAAAAGCTCGATAAGTTCGAAAGTTCGTCC
131 AATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
1059 AAGAACAAAGAGAGAAACAAT
196 AAGAACAAAGAGAGAAACAAT
* * * * * *
1080 TCTCACGT-AATAAGTGTTTAACTCAAAGACCAAAACTTGATTGCGAAATGACAAACAATTTAGG
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
* * * * * * * **
1144 CCAAATGACGTGATTTGCCGAGCATGAAATATTTGAAAAATTGCTCGAAGGAACAGATCGTCTTG
66 CCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCGTCTTG
* * * * *
1209 AACAATTTAAGTATCCAAAGTTAT-AAAGAAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTA
131 AATACTTTAAGGATCCAAAGTTATAAAAG-AACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
*
1273 CAA-AGACAAAGAAAGAAACAAT
195 CAAGA-ACAAAGAGAGAAACAAT
* * * **
1295 TCTCACGTAAATAACTTTTTAATTCAAAGACCAAAAGTTGTTTGCTAAATGACAAACTATTTTCA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
* * * *
1360 CCAAATGATGCGTTTTCCCAAGCATGAAATATTCGAAAAATTGCTC-AAAGGAATGGATCGTCTT
66 CCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAA-GAATGGATCGTCTT
* * * *
1424 GAATACTTTAAGGATCTAAAGTTATGAAAGAACTAGTAAAAGTTTGACAACTTCGAAAGTTCGTC
130 GAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTC
*
1489 CAAGAACAAAGAGCGAAACAAT
195 CAAGAACAAAGAGAGAAACAAT
* *
1511 TCTCACATAAATAAGTTTTTAATTCAACA-ACCAAAACTTGTTTGGAAAATGACAAACTATTTAG
1 TCTCACGTAAATAAGTTTTTAATTCAA-AGACCAAAACTTGTTTGCAAAATGACAAACTATTTAG
* * * ** *
1575 ACCAAATGATGTGATTTGCCGACCATGGAAAATTCGAAAATTTGCT-GAAATGAATGGATCGTCT
65 ACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAA-GAATGGATCGTCT
* * *
1639 TGAACACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGGTTGACAAGTGCGGAAGTTCGT
129 TGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGT
1704 CCAAGAACAAAGAGAGAAACAAT
194 CCAAGAACAAAGAGAGAAACAAT
* * * * *
1727 TCTCACGTAAATAAGTTTTTAATTGAAAGACCAAAACATGTTTACAAAATGACAAAATATTTACA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
* * * * * * * * * * *
1792 CCAAGTGACGCGATTTCCCAAGGATGGAATGTTCGAAAATTTGCTCTAAAAAAAGAATCTTGTTG
66 CCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCGTCTTG
* * * ** * * * * * * *
1857 AATAGTTTAGGGAACTGAAGTTAAAAAATAACTCGTAACAGTTTGACATGTTTGGAAGTTCATCC
131 AATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
1922 AAGAACAAAGAGAGAAACAAT
196 AAGAACAAAGAGAGAAACAAT
* **
1943 TCTCACGTAAATAAGTTTTTAATTCAACGACCAAAACTTGTTTGCAAAACAACAAACTATTTAGA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
* * ** * *
2008 CCAAATTATGCGATTTGCCGAGCATGGAA-AATCGAAAAATTACT-GAAATGAATGGATTGTCTT
66 CCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAA-GAATGGATCGTCTT
*
2071 GAATACTTTAAGGATCCAAAGTAATAAAAGAA-TGAGTAAAAGTTTGACAAGTTCGGAAGTTCGT
130 GAATACTTTAAGGATCCAAAGTTATAAAAGAACT-AGTAAAAGTTTGACAAGTTCGGAAGTTCGT
*
2135 CCAAGAACACAGAGAGAAACAAT
194 CCAAGAACAAAGAGAGAAACAAT
* * * *
2158 TCTCACGTAAATAAGTTTTTAATTCAAAGACTAGAAGTTGTTTGCTAAATGACAAACTATTTAGA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
* *
2223 CCAAATGATGCGATTTCCCGAGCATGGAATATTCGAAAAATTGCTCGAATGAATGGATCGTCTTG
66 CCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCGTCTTG
* *
2288 AATACTTTAAGGATCCAAAGTTATAAAAGAAATAGTAAAAGGTTGACAAGTTCGGAAGTTCGTCC
131 AATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
2353 AAGAACAAAGAGAGAAACAAT
196 AAGAACAAAGAGAGAAACAAT
* * *
2374 TCTCACGTAAATAAGTTTTTAATTGAAAGACCAAAACTTGTTTACAAAATGACAAAATATTTAGA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
* * * * * * * **
2439 CCAAGTGACGCGATTTCCCAAGAATGGAATGTTCGAAAAATTGCTCTAAAAAATGGATCTTGATG
66 CCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCGTCTTG
* * * * * * * * * *
2504 AATACTTTAGGGAACTAAAGTTAAAAAATAACTTGTAAAAGCTCGATAAGTTCGAAAGTTCGTCC
131 AATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
2569 AAGAACAAAGAGAGAAACAAT
196 AAGAACAAAGAGAGAAACAAT
* * * *
2590 TATCACGT-AATAAGTTTTTAATTTAAAGACCAAAACTTGTTTGCAAAATAACAAATTATTTAGA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
* ** *
2654 CCAAATGATGTGATTTCCCGAGCATGGAATGTTC-AGAAAATTGCTTTAAAGAATAGATCGTCTT
66 CCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAAGAATGGATCGTCTT
* * * *
2718 GAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGTCAGGTT-TGACATTTCGT
130 GAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGA-AGTTCGT
* *
2782 CCAAGATCGAAGAGAGAAACAAT
194 CCAAGAACAAAGAGAGAAACAAT
* * *
2805 TCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
* * * * * * * * *
2870 CCAAGTGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGTTCTAAAAAATGGATCTTGTTG
66 CCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCGTCTTG
* * ** * * * * *
2935 AATAGTTTAAGGAACTGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGACC
131 AATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
3000 AAGAACAAAGAGAGAAACAAT
196 AAGAACAAAGAGAGAAACAAT
* * * * *
3021 TCTCATGT-AATAAGTTTTTAATTTAAAGACCAAAACTTGTTTGCAAAATGAAAAATTATTTTGA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
* * *
3085 CCAAATGGTACGATTTCCCGAGCATGGAATGTTC-AGAAAATTGCTCGAAAGAATAGATCGTCTT
66 CCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAAGAATGGATCGTCTT
3149 GAATACTT
130 GAATACTT
Statistics
Matches: 2515, Mismatches: 399, Indels: 53
0.85 0.13 0.02
Matches are distributed among these distances:
214 14 0.01
215 818 0.33
216 1664 0.66
217 19 0.01
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.27
Consensus pattern (216 bp):
TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
CCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCGTCTTG
AATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
AAGAACAAAGAGAGAAACAAT
Found at i:1248 original size:647 final size:647
Alignment explanation
Indices: 1--3156 Score: 4104
Period size: 647 Copynumber: 4.9 Consensus size: 647
*
1 TCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
* * * *
66 CCAAATGATGCGATTTCTCTAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGAATCGTCTTG
66 CCAAATGATGCGATTTCCCGAGCATGGAATATTCGAAAAATTGCTCGAAGGAATGGATCGTCTTG
* * * *
131 AATACTTTAAGGATCTAAAGTTATGAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCATCC
131 AATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
*
196 AAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTGGTTTA
196 AAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTA
261 CAAAATGACAAACTATTTAGACCAAGTGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGC
261 CAAAATGACAAACTATTTAGACCAAGTGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGC
* * * * *
326 T-TTAAAAATGGATCTTATTGAATACTTTAGGGAACTGAAGTTAAAAAATAACTCGTAAAA-GTT
326 TCTAAAAAATGGATCTTCTTGAATACTTTAAGGAACTAAAGTTAAAAAATAACTAGTAAAAGGTT
*
389 CGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAC
391 -GACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
* * ** * * *
454 TTCAACGACCAAAACTTGTTTCCAAAACAACAAACTATTTAGACCAAATGATGTGATTTGCCGAG
455 TTCAAAGACCAAAACTTGTTTACAAAATGACAAA-AATTTAGACCAAATGACGTGATTTCCCGAG
* * * * * *
519 GATGGAAAATTCGAAAAACTGCT-GAAATGAATGGATCGTCTTGAATACTTTAAGGATCCCAAGT
519 CATGGAATATTCGAAAAATTGCTCGAAA-GAATAGATCGTCTTGAATACTTTAAGGAACCAAAGT
* * * *
583 TATAAAAGAA-TGAGTAAAAGTTTGACAGGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAA
583 TAAAAAATAACT-AGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAA
647 T
647 T
* * * * *
648 TCTCACATAAATAAGTTTTTAACTCAAAGACCAGAAGTTGTTTGCTAAATGACAAACTATTTAGA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
* *
713 CCAAATGACGCGATTTCCCGAGCATGGAATATTCGAAAAATTGCTCGAAGGAATGGATTGTCTTG
66 CCAAATGATGCGATTTCCCGAGCATGGAATATTCGAAAAATTGCTCGAAGGAATGGATCGTCTTG
*
778 AATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGGTTGACAAGTTCGGAAGTTCGTCC
131 AATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* * * *
843 AAGAATAAAAAGAGAAACAATTCTCACGTAAATAAGATTTTAATTGAAAGACCAAAACTTGTTTA
196 AAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTA
*
908 CAAAATGACAAAATATTTAGACCAAGTGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGC
261 CAAAATGACAAACTATTTAGACCAAGTGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGC
* * * *
973 TCTAAAAAATGGATCTTGTTGAATACTTTAGGGAACTAAAGTTAAAAAATAACTAGTAAAAGCTC
326 TCTAAAAAATGGATCTTCTTGAATACTTTAAGGAACTAAAGTTAAAAAATAACTAGTAAAAGGTT
* * * *
1038 GATAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGT-AATAAGTGTTTAAC
391 GACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
* * * * *
1102 TCAAAGACCAAAACTTGATTGCGAAATGACAAACAATTTAGGCCAAATGACGTGATTTGCCGAGC
456 TCAAAGACCAAAACTTGTTTACAAAATGACAAA-AATTTAGACCAAATGACGTGATTTCCCGAGC
* * * * * * * *
1167 ATGAAATATTTGAAAAATTGCTCGAAGGAACAGATCGTCTTGAACAATTTAAGTATCCAAAGTTA
520 ATGGAATATTCGAAAAATTGCTCGAAAGAATAGATCGTCTTGAATACTTTAAGGAACCAAAGTTA
* * *
1232 TAAAGA-AACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTACAA-AGACAAAGAAAGAAACAAT
585 -AAAAATAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA-ACAAAGAGAGAAACAAT
* * * **
1295 TCTCACGTAAATAACTTTTTAATTCAAAGACCAAAAGTTGTTTGCTAAATGACAAACTATTTTCA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
* * * *
1360 CCAAATGATGCGTTTTCCCAAGCATGAAATATTCGAAAAATTGCTCAAAGGAATGGATCGTCTTG
66 CCAAATGATGCGATTTCCCGAGCATGGAATATTCGAAAAATTGCTCGAAGGAATGGATCGTCTTG
* * * *
1425 AATACTTTAAGGATCTAAAGTTATGAAAGAACTAGTAAAAGTTTGACAACTTCGAAAGTTCGTCC
131 AATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
* *
1490 AAGAACAAAGAGCGAAACAATTCTCACATAAATAAGTTTTTAATTCAACA-ACCAAAACTTGTTT
196 AAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA-AGACCAAAACTTGTTT
** * * * * * ** ** *
1554 GGAAAATGACAAACTATTTAGACCAAATGATGTGATTTGCCGACCATGGAAAATTCGAAAATTTG
260 ACAAAATGACAAACTATTTAGACCAAGTGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTG
* * * * * * * *
1619 CT-GAAATGAATGGATCGTCTTGAACACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGG
325 CTCTAAA-AAATGGATCTTCTTGAATACTTTAAGGAACTAAAGTTAAAAAATAACTAGTAAAAGG
*
1683 TTGACAAGTGCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
389 TTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
* * * * * *
1748 ATTGAAAGACCAAAACATGTTTACAAAATGACAAAATATTTACACCAAGTGACGCGATTTCCCAA
454 ATTCAAAGACCAAAACTTGTTTACAAAATGACAAAA-ATTTAGACCAAATGACGTGATTTCCCGA
* * * * * * * * * **
1813 GGATGGAATGTTCGAAAATTTGCTCTAAA-AAAAGAATCTTGTTGAATAGTTTAGGGAACTGAAG
518 GCATGGAATATTCGAAAAATTGCTCGAAAGAATAG-ATCGTCTTGAATACTTTAAGGAACCAAAG
* * * * * *
1877 TTAAAAAATAACTCGTAACAGTTTGACATGTTTGGAAGTTCATCCAAGAACAAAGAGAGAAACAA
582 TTAAAAAATAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAA
1942 T
647 T
* **
1943 TCTCACGTAAATAAGTTTTTAATTCAACGACCAAAACTTGTTTGCAAAACAACAAACTATTTAGA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
* * * * * *
2008 CCAAATTATGCGATTTGCCGAGCATGGAA-AATCGAAAAATTACT-GAAATGAATGGATTGTCTT
66 CCAAATGATGCGATTTCCCGAGCATGGAATATTCGAAAAATTGCTCG-AAGGAATGGATCGTCTT
*
2071 GAATACTTTAAGGATCCAAAGTAATAAAAGAA-TGAGTAAAAGTTTGACAAGTTCGGAAGTTCGT
130 GAATACTTTAAGGATCCAAAGTTATAAAAGAACT-AGTAAAAGTTTGACAAGTTCGGAAGTTCGT
* * * *
2135 CCAAGAACACAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACTAGAAGTTGTT
194 CCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTT
* * * * * * *
2200 TGCTAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATATTCGAAAAATT
259 TACAAAATGACAAACTATTTAGACCAAGTGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATT
* ** * * * * * *
2265 GCTCGAATGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAAATAGTAAAAGG
324 GCTCTAAAAAATGGATCTTCTTGAATACTTTAAGGAACTAAAGTTAAAAAATAACTAGTAAAAGG
2330 TTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
389 TTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
* * * *
2395 ATTGAAAGACCAAAACTTGTTTACAAAATGACAAAATATTTAGACCAAGTGACGCGATTTCCCAA
454 ATTCAAAGACCAAAACTTGTTTACAAAATGACAAAA-ATTTAGACCAAATGACGTGATTTCCCGA
* * * * * * ** * *
2460 GAATGGAATGTTCGAAAAATTGCTCTAAAAAATGGATCTTGATGAATACTTTAGGGAACTAAAGT
518 GCATGGAATATTCGAAAAATTGCTCGAAAGAATAGATCGTCTTGAATACTTTAAGGAACCAAAGT
* * * *
2525 TAAAAAATAACTTGTAAAAGCTCGATAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAAT
583 TAAAAAATAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAAT
* * * *
2590 TATCACGT-AATAAGTTTTTAATTTAAAGACCAAAACTTGTTTGCAAAATAACAAATTATTTAGA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
* * ** * *
2654 CCAAATGATGTGATTTCCCGAGCATGGAATGTTC-AGAAAATTGCTTTAAAGAATAGATCGTCTT
66 CCAAATGATGCGATTTCCCGAGCATGGAATATTCGA-AAAATTGCTCGAAGGAATGGATCGTCTT
* * * *
2718 GAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGTCAGGTT-TGACATTTCGT
130 GAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGA-AGTTCGT
* * * *
2782 CCAAGATCGAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
194 CCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTT
2847 TACAAAATGACAAACTATTTAGACCAAGTGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATT
259 TACAAAATGACAAACTATTTAGACCAAGTGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATT
* * * * * *
2912 GTTCTAAAAAATGGATCTTGTTGAATAGTTTAAGGAACTGAAGTTAAAAAATAACTCGTAAAAGT
324 GCTCTAAAAAATGGATCTTCTTGAATACTTTAAGGAACTAAAGTTAAAAAATAACTAGTAAAAGG
* * *
2977 TTGACAAGTTCGAAAGTTCGACCAAGAACAAAGAGAGAAACAATTCTCATGT-AATAAGTTTTTA
389 TTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
* * *
3041 ATTTAAAGACCAAAACTTGTTTGCAAAATGA-AAAATTATTTTGACCAAATG--GTACGATTTCC
454 ATTCAAAGACCAAAACTTGTTTACAAAATGACAAAA--ATTTAGACCAAATGACGT--GATTTCC
*
3103 CGAGCATGGAATGTTC-AGAAAATTGCTCGAAAGAATAGATCGTCTTGAATACTT
515 CGAGCATGGAATATTCGA-AAAATTGCTCGAAAGAATAGATCGTCTTGAATACTT
Statistics
Matches: 2209, Mismatches: 273, Indels: 55
0.87 0.11 0.02
Matches are distributed among these distances:
644 1 0.00
645 5 0.00
646 192 0.09
647 1656 0.75
648 353 0.16
649 2 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.27
Consensus pattern (647 bp):
TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
CCAAATGATGCGATTTCCCGAGCATGGAATATTCGAAAAATTGCTCGAAGGAATGGATCGTCTTG
AATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC
AAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTA
CAAAATGACAAACTATTTAGACCAAGTGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGC
TCTAAAAAATGGATCTTCTTGAATACTTTAAGGAACTAAAGTTAAAAAATAACTAGTAAAAGGTT
GACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
TCAAAGACCAAAACTTGTTTACAAAATGACAAAAATTTAGACCAAATGACGTGATTTCCCGAGCA
TGGAATATTCGAAAAATTGCTCGAAAGAATAGATCGTCTTGAATACTTTAAGGAACCAAAGTTAA
AAAATAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAAT
Found at i:1294 original size:431 final size:432
Alignment explanation
Indices: 1--3156 Score: 4058
Period size: 431 Copynumber: 7.3 Consensus size: 432
*
1 TCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
* * * *
66 CCAAATGATGCGATTTCTCTAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGAATCGTCTTG
66 CCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCGTCTTG
* *
131 AATACTTTAAGGATCTAAAGTTATGAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCATCC
131 AATACTTTAAGGATCTAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCC
* *
196 AAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTGGTTTA
196 AAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTG
* * * *
261 CAAAATGACAAACTATTTAGACCAAGTGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGC
261 CAAAATGACAAACTATTTAGACCAAATGACGCGATTTCCCGAGCATGGAATATTCGAAAAATTGC
** * * * * ** * * * *
326 TTTAAA-AATGGATCTTATTGAATACTTTAGGGAACTGAAGTTAAAAAATAACTCGTAAAAGTTC
326 TCGAAAGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTT
390 GACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAAT
391 GACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAAT
* * * **
432 TCTCACGTAAATAAGTTTTTACTTCAACGACCAAAACTTGTTTCCAAAACAACAAACTATTTAGA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
* * * ** *
497 CCAAATGATGTGATTTGCCGAGGATGGAAAATTCGAAAAACTGCT-GAAATGAATGGATCGTCTT
66 CCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAA-GAATGGATCGTCTT
** * *
561 GAATACTTTAAGGATCCCAAGTTATAAAAGAA-TGAGTAAAAGTTTGACAGGTTCGGAAGTTCGT
130 GAATACTTTAAGGATCTAAAGTTATAAAAGAACT-AGTAAAAGTTTGACAAGTTCGAAAGTTCGT
* * * *
625 CCAAGAACAAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAACTCAAAGACCAGAAGTTGTT
194 CCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTT
*
690 TGCTAAATGACAAACTATTTAGACCAAATGACGCGATTTCCCGAGCATGGAATATTCGAAAAATT
259 TGCAAAATGACAAACTATTTAGACCAAATGACGCGATTTCCCGAGCATGGAATATTCGAAAAATT
* * *
755 GCTCGAAGGAATGGATTGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGG
324 GCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGT
* *
820 TTGACAAGTTCGGAAGTTCGTCCAAGAATAAAAAGAGAAACAAT
389 TTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAAT
* * * *
864 TCTCACGTAAATAAGATTTTAATTGAAAGACCAAAACTTGTTTACAAAATGACAAAATATTTAGA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
* * * * * * * *
929 CCAAGTGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTGCTCTAAAAAATGGATCTTGTTG
66 CCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCGTCTTG
* * * * * * *
994 AATACTTTAGGGAACTAAAGTTAAAAAATAACTAGTAAAAGCTCGATAAGTTCGAAAGTTCGTCC
131 AATACTTTAAGGATCTAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCC
* * *
1059 AAGAACAAAGAGAGAAACAATTCTCACGT-AATAAGTGTTTAACTCAAAGACCAAAACTTGATTG
196 AAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTG
* * * * * * *
1123 CGAAATGACAAACAATTTAGGCCAAATGACGTGATTTGCCGAGCATGAAATATTTGAAAAATTGC
261 CAAAATGACAAACTATTTAGACCAAATGACGCGATTTCCCGAGCATGGAATATTCGAAAAATTGC
* ** * * *
1188 TCGAAGGAACAGATCGTCTTGAACAATTTAAGTATCCAAAGTTAT-AAAGAAACTAGTAAAAGTT
326 TCGAAAGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAG-AACTAGTAAAAGTT
* * *
1252 TGACAAGTTCGAAAGTTCGTACAA-AGACAAAGAAAGAAACAAT
390 TGACAAGTTCGGAAGTTCGTCCAAGA-ACAAAGAGAGAAACAAT
* * * **
1295 TCTCACGTAAATAACTTTTTAATTCAAAGACCAAAAGTTGTTTGCTAAATGACAAACTATTTTCA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
* * * *
1360 CCAAATGATGCGTTTTCCCAAGCATGAAATATTCGAAAAATTGCTC-AAAGGAATGGATCGTCTT
66 CCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAA-GAATGGATCGTCTT
* *
1424 GAATACTTTAAGGATCTAAAGTTATGAAAGAACTAGTAAAAGTTTGACAACTTCGAAAGTTCGTC
130 GAATACTTTAAGGATCTAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTC
* *
1489 CAAGAACAAAGAGCGAAACAATTCTCACATAAATAAGTTTTTAATTCAACA-ACCAAAACTTGTT
195 CAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA-AGACCAAAACTTGTT
* * * * * * *
1553 TGGAAAATGACAAACTATTTAGACCAAATGATGTGATTTGCCGACCATGGAAAATTCGAAAATTT
259 TGCAAAATGACAAACTATTTAGACCAAATGACGCGATTTCCCGAGCATGGAATATTCGAAAAATT
*
1618 GCT-GAAATGAATGGATCGTCTTGAACACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAG
324 GCTCGAAA-GAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAG
* *
1682 GTTGACAAGTGCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAAT
388 TTTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAAT
* * * * *
1727 TCTCACGTAAATAAGTTTTTAATTGAAAGACCAAAACATGTTTACAAAATGACAAAATATTTACA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
* * * * * * * * * * *
1792 CCAAGTGACGCGATTTCCCAAGGATGGAATGTTCGAAAATTTGCTCTAAAAAAAGAATCTTGTTG
66 CCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCGTCTTG
* * * * * * * * * * * *
1857 AATAGTTTAGGGAACTGAAGTTAAAAAATAACTCGTAACAGTTTGACATGTTTGGAAGTTCATCC
131 AATACTTTAAGGATCTAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCC
*
1922 AAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAACGACCAAAACTTGTTTG
196 AAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTG
** * * * * *
1987 CAAAACAACAAACTATTTAGACCAAATTATGCGATTTGCCGAGCATGGAA-AATCGAAAAATTAC
261 CAAAATGACAAACTATTTAGACCAAATGACGCGATTTCCCGAGCATGGAATATTCGAAAAATTGC
* *
2051 T-GAAATGAATGGATTGTCTTGAATACTTTAAGGATCCAAAGTAATAAAAGAA-TGAGTAAAAGT
326 TCGAAA-GAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACT-AGTAAAAGT
*
2114 TTGACAAGTTCGGAAGTTCGTCCAAGAACACAGAGAGAAACAAT
389 TTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAAT
* * * *
2158 TCTCACGTAAATAAGTTTTTAATTCAAAGACTAGAAGTTGTTTGCTAAATGACAAACTATTTAGA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
* *
2223 CCAAATGATGCGATTTCCCGAGCATGGAATATTCGAAAAATTGCTCGAATGAATGGATCGTCTTG
66 CCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCGTCTTG
* * * *
2288 AATACTTTAAGGATCCAAAGTTATAAAAGAAATAGTAAAAGGTTGACAAGTTCGGAAGTTCGTCC
131 AATACTTTAAGGATCTAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCC
* *
2353 AAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTGAAAGACCAAAACTTGTTTA
196 AAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTG
* * * * *
2418 CAAAATGACAAAATATTTAGACCAAGTGACGCGATTTCCCAAGAATGGAATGTTCGAAAAATTGC
261 CAAAATGACAAACTATTTAGACCAAATGACGCGATTTCCCGAGCATGGAATATTCGAAAAATTGC
* * * ** * * * * * * * *
2483 TCTAAAAAATGGATCTTGATGAATACTTTAGGGAACTAAAGTTAAAAAATAACTTGTAAAAGCTC
326 TCGAAAGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTT
* *
2548 GATAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAAT
391 GACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAAT
* * * *
2590 TATCACGT-AATAAGTTTTTAATTTAAAGACCAAAACTTGTTTGCAAAATAACAAATTATTTAGA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
* ** *
2654 CCAAATGATGTGATTTCCCGAGCATGGAATGTTC-AGAAAATTGCTTTAAAGAATAGATCGTCTT
66 CCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAAGAATGGATCGTCTT
* * * * * *
2718 GAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGTCAGGTTTGACATTTCGTC
130 GAATACTTTAAGGATCTAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTC
* * * *
2783 CAAGATCGAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
195 CAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTT
* * * * *
2848 ACAAAATGACAAACTATTTAGACCAAGTGACGCGATTTCCCAAGGATGGAATGTTCGAAAAATTG
260 GCAAAATGACAAACTATTTAGACCAAATGACGCGATTTCCCGAGCATGGAATATTCGAAAAATTG
* * * * * * * ** * * *
2913 TTCTAAAAAATGGATCTTGTTGAATAGTTTAAGGAACTGAAGTTAAAAAATAACTCGTAAAAGTT
325 CTCGAAAGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTT
* *
2978 TGACAAGTTCGAAAGTTCGACCAAGAACAAAGAGAGAAACAAT
390 TGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAAT
* * * * *
3021 TCTCATGT-AATAAGTTTTTAATTTAAAGACCAAAACTTGTTTGCAAAATGAAAAATTATTTTGA
1 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
* * *
3085 CCAAATGGTACGATTTCCCGAGCATGGAATGTTC-AGAAAATTGCTCGAAAGAATAGATCGTCTT
66 CCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAAGAATGGATCGTCTT
3149 GAATACTT
130 GAATACTT
Statistics
Matches: 2378, Mismatches: 327, Indels: 40
0.87 0.12 0.01
Matches are distributed among these distances:
430 14 0.01
431 1541 0.65
432 806 0.34
433 17 0.01
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.27
Consensus pattern (432 bp):
TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGA
CCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCGTCTTG
AATACTTTAAGGATCTAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCC
AAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTG
CAAAATGACAAACTATTTAGACCAAATGACGCGATTTCCCGAGCATGGAATATTCGAAAAATTGC
TCGAAAGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTT
GACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAAT
Done.