genome.fa.s13893.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013893.1 Kokia drynarioides strain JFW-HI SEQ_128921, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71754

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5772--5805	15	2.3	15	100	0	68	5	14	58	20	1.57
6750--6828	31	2.5	31	78	8	81	15	10	3	70	1.28
11976--12005	2	15.0	2	100	0	60	50	0	0	50	1.00
11885--12075	101	1.9	101	98	0	373	38	9	8	43	1.68
14771--14808	15	2.5	15	83	16	51	34	0	7	57	1.28
21173--21318	72	2.0	72	85	0	193	27	23	11	36	1.90
21173--21364	72	2.7	71	80	6	190	28	23	13	34	1.93
24572--24615	15	3.2	13	84	15	54	56	2	2	38	1.24
26255--26543	30	9.9	28	72	17	187	32	4	30	32	1.78
26308--26528	59	3.7	59	80	7	211	33	4	29	33	1.76
26320--26543	29	7.6	30	75	12	173	34	3	29	32	1.73
26256--26531	59	4.7	58	77	10	201	33	4	29	32	1.77
27671--27729	30	1.9	31	89	3	93	45	8	1	44	1.44
28374--28454	17	4.6	17	80	4	90	51	2	2	43	1.28
28780--29411	201	3.1	204	77	5	481	21	22	19	36	1.95
29265--29533	122	2.2	123	83	5	339	22	21	17	38	1.93
30497--30533	17	2.2	17	100	0	74	32	0	24	43	1.55
39844--39943	29	3.5	28	69	5	76	33	7	27	33	1.83
39817--40106	59	5.0	58	74	16	176	32	4	28	33	1.77
39911--40104	29	6.6	28	81	14	207	34	2	28	34	1.71
39911--40104	59	3.3	58	82	13	195	34	2	28	34	1.71
41916--41996	17	4.6	17	80	4	90	50	2	2	44	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41916--41995	35	2.3	34	84	4	97	51	2	2	43	1.28
47618--47705	41	2.1	41	95	0	158	40	6	10	42	1.65
52843--52939	18	5.5	18	79	17	98	37	0	6	56	1.24
52876--52942	6	11.3	6	76	9	66	43	0	2	53	1.16
52876--52942	24	2.8	24	78	10	75	43	0	2	53	1.16
53616--53690	27	2.7	27	79	8	80	49	0	2	48	1.15
53643--53683	18	2.3	19	87	12	68	48	0	2	48	1.14
53670--53705	3	11.7	3	88	5	54	63	0	0	36	0.94
53638--53691	27	2.0	27	88	0	81	46	0	3	50	1.19
54697--54955	59	4.4	59	77	10	235	37	25	2	35	1.69
54697--55070	29	12.8	29	72	16	204	35	26	3	34	1.74
54823--54983	88	1.8	86	79	10	184	37	24	2	34	1.69
65685--65900	114	1.9	114	87	5	321	36	18	20	24	1.95
66005--66335	116	2.9	113	80	5	378	35	18	22	23	1.96
65914--66287	116	3.2	113	76	7	349	35	20	22	22	1.96
66193--66633	206	2.2	206	80	3	491	37	19	20	22	1.94
66949--67011	17	3.7	17	86	0	90	41	0	4	53	1.22
66949--67017	6	12.0	6	75	14	56	42	0	4	53	1.20
66979--67024	23	2.0	22	95	4	83	43	0	2	54	1.12
69130--69248	60	2.0	60	93	0	202	18	6	31	42	1.76

Tables:   1

The End!