Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013898.1 Kokia drynarioides strain JFW-HI SEQ_128927, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3811
ACGTcount: A:0.29, C:0.10, G:0.17, T:0.32

Warning! 449 characters in sequence are not A, C, G, or T


Found at i:2508 original size:43 final size:43

Alignment explanation


    Indices: 2375--2486  Score: 215
    Period size: 43  Copynumber: 2.6  Consensus size: 43

       2365 TACCAGACCA

                    *                                  
       2375 TGTGTGTATATTGTTTTGAGGCACACAAGCGTGTCCTAGACTG
          1 TGTGTGTACATTGTTTTGAGGCACACAAGCGTGTCCTAGACTG

                                                       
       2418 TGTGTGTACATTGTTTTGAGGCACACAAGCGTGTCCTAGACTG
          1 TGTGTGTACATTGTTTTGAGGCACACAAGCGTGTCCTAGACTG

                                      
       2461 TGTGTGTACATTGTTTTGAGGCACAC
          1 TGTGTGTACATTGTTTTGAGGCACAC

       2487 GGGCGTGTGC


Statistics
Matches: 68,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  43   68  1.00

ACGTcount: A:0.21, C:0.17, G:0.28, T:0.35


Consensus pattern (43 bp):   
TGTGTGTACATTGTTTTGAGGCACACAAGCGTGTCCTAGACTG
Done.