Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013900.1 Kokia drynarioides strain JFW-HI SEQ_128929, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6913
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.34


Found at i:3916 original size:5 final size:5

Alignment explanation


    Indices: 3901--3930  Score: 51
    Period size: 5  Copynumber: 5.8  Consensus size: 5

       3891 GTTTGATTAT

                                               
       3901 TTTTAA TTTTA TTTTA TTTTA TTTTA TTTT
          1 TTTT-A TTTTA TTTTA TTTTA TTTTA TTTT

       3931 GTTAGTAGTA


Statistics
Matches: 24,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   5   20  0.83
   6    4  0.17

ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80


Consensus pattern (5 bp):   
TTTTA

Found at i:4129 original size:17 final size:18

Alignment explanation


    Indices: 4098--4144  Score: 51
    Period size: 17  Copynumber: 2.6  Consensus size: 18

       4088 TATTTTGTAC

                  *   *       
       4098 TATTTTGGTAAATAACTA
          1 TATTTTTGTATATAACTA

                           *  
       4116 -ATTTTTGTATATAATTA
          1 TATTTTTGTATATAACTA

                        
       4133 TTATTTTTGTAT
          1 -TATTTTTGTAT

       4145 TATATTGCTT


Statistics
Matches: 24,  Mismatches: 3, Indels: 3
        0.80            0.10        0.10

Matches are distributed among these distances:
  17   14  0.58
  19   10  0.42

ACGTcount: A:0.32, C:0.02, G:0.09, T:0.57


Consensus pattern (18 bp):   
TATTTTTGTATATAACTA
Done.