Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013901.1 Kokia drynarioides strain JFW-HI SEQ_128930, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27703
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Found at i:2231 original size:216 final size:215
Alignment explanation
Indices: 1632--3897 Score: 2256
Period size: 215 Copynumber: 10.7 Consensus size: 215
1622 TTTTCTTTCA
* * * *
1632 TCCAAGAACCAAGAGAGAAACAA-TCTCACGTAAATAAGTTTTTATTTCAAAGACCAAAAGTTGA
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAACTTGT
* * *
1696 TAACAAAATGACAAACTATTTAGACTAAACT-ATGCGATTT-TTCGAACATGGAATGTTC--AAA
66 TTACAAAATGACAAACTATTTAGACCAAA-TGATGCGATTTCTT--AGCATGGAATGTTCAGAAA
* * * * * * * * * *
1757 ATTGCTAGAAGGAATGAATTGTCTTGAATTCTTTATGGAATCAAAATTATAAAAGAAGTCATAAA
128 ATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAA
* * *
1822 AGTTTGTCAAGTTCGGAAGTTTG
193 AGTTTGACAAGTTCGAAAGTTCG
* * *
1845 TCCAAGAACCAAGAGACAAACAATTGTCACGTAAATAAGTTTTTAATTC-AAGATC-AAAAGTTG
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-CAAAAACTTG
* * * * * ** *
1908 ATAACAAAATGAAAAACTATTTAGACAAAACT-ATGTGATTTCCCGAGCATGGAATGTTCGGAAA
65 TTTACAAAATGACAAACTATTTAGACCAAA-TGATGCGATTT-CTTAGCATGGAATGTTCAGAAA
* * * *
1972 ATTGCTCGAAAGAATGGATCGACTTGAATTCTTTAAGGAACCGAAGTTATAAAAGAACTCATAAA
128 ATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAA
* *
2037 GGTTTGACAAGTTCGAAAGTTTG
193 AGTTTGACAAGTTCGAAAGTTCG
* * * * * *
2060 TCTC-AGAACCAATAGAGAAACAATTCTCACATAAGTAAGTTTTTAACTCAAACACAAAAAATTG
1 TC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAACTTG
* * * * *
2124 TTTACAAAATGACAAACTATTTAGACCAAATAATGTGATTTCTTATGCGTGGGAA-GCTCAAAAA
65 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTTA-GCAT-GGAATGTTCAGAAA
* * * * * **
2188 ATTGCTTGAAGGAATGGATTGTCTTGAATACATTAATGAACCGAAGTTATTATCGAACTCGTAAA
128 ATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAA
* * *
2253 AGTTTGTCAAGTTCAAAAGTTCA
193 AGTTTGACAAGTTCGAAAGTTCG
* * * * *
2276 TCCAAGAACCAAGAGAGAAACAATTCTTACGCAAATAAGTTTTTAATTCTAAGAC-AAAAGTTGA
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAACTTGT
* * ** * *
2340 TAACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATCGG-ATGTTTAGAAAT
66 TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-CTTAGCAT-GGAATGTTCAGAAAA
* * *
2404 TTGCTCGAAGGAATGGATCATCTTTAATA-TTTAAGGAACCCGAAGTTATAAAAGGACTCGTAAA
129 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-CCGAAGTTATAAAAGAACTCGTAAA
* *
2468 AGTTTGACAAGTTTGAAAGTTCA
193 AGTTTGACAAGTTCGAAAGTTCG
* * * *
2491 TCTC-AGAACC-AGTAGAAAAACAATTCTTACGTAAAGAAGTTTTTAATTCAAAGACAAAAATTT
1 TC-CAAGAACCAAG-AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAACTT
* * * **
2554 GTTTACAAAATGATAAACTATTTAGACCAAATGATGTGATTTCTTTTGCATGGAATGTTTGGAAA
64 GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC-TTAGCATGGAATGTTCAGAAA
* * * * **
2619 ATTGATCGAAGAAATGGATCATCTTGAATA-TACTAAGGAACC-AAGTTATAACGGAACTCGTAA
128 ATTGCTCGAAGGAATGGATCGTCTTGAATACT-TTAAGGAACCGAAGTTATAAAAGAACTCGTAA
*
2682 AAGTTTGACAAGTTCGAAAGTTTG
192 AAGTTTGACAAGTTCGAAAGTTCG
* *
2706 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAGAAACTTTT
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAACTTGT
* * *
2771 TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCTAAGCGTGGAATGTTCAAAAAAT
66 TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-CTTAGCATGGAATGTTCAGAAAAT
* * * *
2836 TACTCGAAGGAAAGGATCATCTTGAATACTTT----AA--G--G---TAACA-AA---GTAAAAG
130 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
*
2886 TTTGACAAGTTCGGAAGTTCG
195 TTTGACAAGTTCGAAAGTTCG
* * * *
2907 TACC-AGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACTAAAACATC
1 T-CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAACTTG
* * * * * *
2971 TTTACAAAATGACAAACTAATTAGACAAAATGATTCAATTTCTCGAGCATGGAATGTTCGGAAAA
65 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCT-TAGCATGGAATGTTCAG-AAA
* * * ** * * * *
3036 ATT-TTCGAAGGAATGTATCATCTTGAATACTTTTAAAAAACCAAAGTAATAAAAGATCTCGTGA
128 ATTGCTCGAAGGAATGGATCGTCTTGAATAC-TTTAAGGAACCGAAGTTATAAAAGAACTCGTAA
**
3100 AAGTTTGACAAGTTCTTAAG-TCG
192 AAGTTTGACAAGTTCGAAAGTTCG
* * *
3123 TCCAAGAACCCAA-A-AGAAACAATTCTCACATAAATATGTTTTTAATTCAAAGACCAAAACTTG
1 TCCAAGAA-CCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAACTTG
* * * * *
3186 TTTAGAAAATGACAAACTATTTAAACCAAATGAAGCAATTTC----C------CG---AGAAAAT
65 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTTAGCATGGAATGTTCAGAAAAT
* * * *
3238 TTCTCGAAGGAA---ATCGTCTTAAATATTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAG
130 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
* * *
3300 TTTGACAAGTTTGGAAGTTCA
195 TTTGACAAGTTCGAAAGTTCG
* * * * * * * * *
3321 TCCCAGAACCAATAAAGAAATAATTCTCACGTAAA-AGGTTTTTAATTTAAAGACCAAAACCTAT
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAACTTGT
* * * ** * *
3385 TTACAAAATGACAAACTATTTAGACCAAATTATTCGATTACCCGAACATGGAATGTT-TGAAAAA
66 TTACAAAATGACAAACTATTTAGACCAAATGATGCGATT-TCTTAGCATGGAATGTTCAG-AAAA
*
3449 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAGGAACTCGTAAAA
129 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAA
*
3514 GTTTGACAGGTTCGAAAGTTCG
194 GTTTGACAAGTTCGAAAGTTCG
* * *
3536 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAGTCTTTAATTCAAAGA-AACAAACTTT
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAA-AAACTTG
* * *
3600 TTTAGAAAATGACAAACTATTTAGACCAAATGATGCGATTTCATGAGAATGGAATGTTCAGAAAA
65 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC-TTAGCATGGAATGTTCAGAAAA
* * * * * * *
3665 TTGCTCAAAGGAATTGATAGTCTTGAATACATTAATGAACTGAAGTTATAACAGAACTCGTAAAA
129 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAA
* *
3730 GTTTGACAAGTTTGGAAA-TTCA
194 GTTTGACAAG-TTCGAAAGTTCG
* * * *
3752 TCCAAG-ACCTAAGAGAGAAACAATCCTCACGCAAATAAGTTTTTAATTCTAAGAC-AAAAGTTG
1 TCCAAGAACC-AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAACTTG
* * * * *
3815 ATAACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTTTCTAACATGGAATGTTCAGAAAA
65 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCT-TAGCATGGAATGTTCAGAAAA
3880 TTGCTCGAAGGAATGGAT
129 TTGCTCGAAGGAATGGAT
3898 TGATGCGAGC
Statistics
Matches: 1717, Mismatches: 259, Indels: 152
0.81 0.12 0.07
Matches are distributed among these distances:
197 47 0.03
198 79 0.05
199 19 0.01
200 8 0.00
201 166 0.10
202 11 0.01
203 1 0.00
204 3 0.00
205 4 0.00
206 2 0.00
208 1 0.00
209 1 0.00
210 2 0.00
211 3 0.00
212 16 0.01
213 89 0.05
214 37 0.02
215 722 0.42
216 463 0.27
217 43 0.03
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (215 bp):
TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAACTTGT
TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTTAGCATGGAATGTTCAGAAAATT
GCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGT
TTGACAAGTTCGAAAGTTCG
Found at i:2558 original size:431 final size:429
Alignment explanation
Indices: 1628--3897 Score: 2323
Period size: 431 Copynumber: 5.3 Consensus size: 429
1618 GACGTTTTCT
* * *
1628 TTCATCCAAGAACCAAGAGAGAAACAA-TCTCACGTAAATAAGTTTTTATTTCAAAGACCAAAAG
1 TTCATCC-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAAC
* * * *
1692 TTGATAACAAAATGACAAACTATTTAGACTAAACT-ATGCGATTT-TTCGAACATGGAATGTTC-
65 TTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATGTGATTTCTT--AACATGGAATGTTCG
* * * * * * * * * *
1754 -AAAATTGCTAGAAGGAATGAATTGTCTTGAATTCTTTATGGAATCAAAATTATAAAAGAAGTCA
127 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACATTAAGGAACCAAAGTTATAAAAGAACTCG
* * * * *
1818 TAAAAGTTTGTCAAGTTCGGAAGTTTGTCCAAGAACCAAGAGACAAACAATTGTCACGTAAATAA
192 TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * * * *
1883 GTTTTTAATTC-AAGATCAAAAGTTGATAACAAAATGAAAAACTATTTAGACAAAACT-ATGTGA
257 GTTTTTAATTCAAAGA-CAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATGCGA
* * * *
1946 TTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAAGAATGGATCGA-CTTGAATTCTTTAAGG
320 TTTCCCAAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATC-ATCTTGAATACTTTAAGG
* * *
2010 AACCGAAGTTATAAAAGAACTCATAAAGGTTTGACAAGTTCGAAAG
384 AACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGAAAG
** * * * * * *
2056 TTTGTCTCAGAACCAATAGAGAAACAATTCTCACATAAGTAAGTTTTTAACTCAAACACAAAAAA
1 TTCATC-CAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAAC
* * * * *
2121 TTGTTTACAAAATGACAAACTATTTAGACCAAATAATGTGATTTCTTATGCGTGGGAA-GCTCAA
65 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCTTA-ACAT-GGAATGTTCGA
* * * * * **
2185 AAAATTGCTTGAAGGAATGGATTGTCTTGAATACATTAATGAACCGAAGTTATTATCGAACTCGT
128 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACATTAAGGAACCAAAGTTATAAAAGAACTCGT
* * * * *
2250 AAAAGTTTGTCAAGTTCAAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTTACGCAAATAAG
193 AAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * *
2315 TTTTTAATTCTAAGACAAAAGTTGATAACAAAATGAAAAACTATTTAGACCAAATGATGCGATTT
258 TTTTTAATTCAAAGACAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * *
2380 CCCAAGCATCGG-ATGTTTAGAAATTTGCTCGAAGGAATGGATCATCTTTAATA-TTTAAGGAAC
323 CCCAAGCAT-GGAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAA-
*
2443 CCGAAGTTATAAAAGGACTCGTAAAAGTTTGACAAGTTTGAAAG
386 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGAAAG
* * *
2487 TTCATCTCAGAACC-AGTAGAAAAACAATTCTTACGTAAAGAAGTTTTTAATTCAAAGACAAAAA
1 TTCATC-CAGAACCAAG-AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAA
* * ** * *
2551 TTTGTTTACAAAATGATAAACTATTTAGACCAAATGATGTGATTTCTTTTGCATGGAATGTTTGG
64 CTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTC-TTAACATGGAATGTTCGA
* * * * * **
2616 AAAATTGATCGAAGAAATGGATCATCTTGAATATACTAAGGAACC-AAGTTATAACGGAACTCGT
128 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACATTAAGGAACCAAAGTTATAAAAGAACTCGT
*
2680 AAAAGTTTGACAAGTTCGAAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
193 AAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
*
2745 TTTTTAATTCAAAGACAGAAACTTTTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
258 TTTTTAATTCAAAGACA-AAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* * * * *
2810 TCCTAAGCGTGGAATGTTCAAAAAATTACTCGAAGGAAAGGATCATCTTGAATACTTT----AA-
322 TCCCAAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAAC
* * *
2870 -G--G---TAACA-AA---GTAAAAGTTTGACAAGTTCGGAAG
387 CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGAAAG
* * *
2903 TTCGTACCAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACTAAAAC
1 TTCAT-CCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAAC
* * * * * * *
2968 ATCTTTACAAAATGACAAACTAATTAGACAAAATGAT-TCAATTTCTCGAGCATGGAATGTTCGG
65 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGT-GATTTCT-TAACATGGAATGTTC-G
* * * * ** * *
3032 AAAAATT-TTCGAAGGAATGTATCATCTTGAATACTTTTAAAAAACCAAAGTAATAAAAGATCTC
127 AAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC-ATTAAGGAACCAAAGTTATAAAAGAACTC
* ** *
3096 GTGAAAGTTTGACAAGTTCTTAAG-TCGTCCAAGAACCCAA-A-AGAAACAATTCTCACATAAAT
191 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAA-CCAAGAGAGAAACAATTCTCACGTAAAT
* * * * *
3158 ATGTTTTTAATTCAAAGACCAAAACTTGTTTAGAAAATGACAAACTATTTAAACCAAATGAAGCA
255 AAGTTTTTAATTCAAAGA-CAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCG
* * * *
3223 ATTT-CC---C-------G---AGAAAATTTCTCGAAGGAA---ATCGTCTTAAATATTTTAAGG
319 ATTTCCCAAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGG
* *
3271 AACCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGGAAG
384 AACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGAAAG
* * * * * *
3317 TTCATCCCAGAACCAATAAAGAAATAATTCTCACGTAAA-AGGTTTTTAATTTAAAGACCAAAAC
1 TTCAT-CCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAAC
* * * * ** *
3381 CTATTTACAAAATGACAAACTATTTAGACCAAATTAT-TCGATTACCCGAACATGGAATGTTTGA
65 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGT-GATT-TCTTAACATGGAATGTTCGA
* * *
3445 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAGGAACTCGT
128 AAAATTGCTCGAAGGAATGGATCGTCTTGAATACATTAAGGAACCAAAGTTATAAAAGAACTCGT
* *
3510 AAAAGTTTGACAGGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAAAAG
193 AAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * *
3575 TCTTTAATTCAAAGAAACAAACTTTTTTAGAAAATGACAAACTATTTAGACCAAATGATGCGATT
258 TTTTTAATTCAAAGACA-AAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
*** * * * * *
3640 TCATGAGAATGGAATGTTCAGAAAATTGCTCAAAGGAATTGAT-AGTCTTGAATACATTAATGAA
322 TCCCAAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCA-TCTTGAATACTTTAAGGAA
* *
3704 CTGAAGTTATAACAGAACTCGTAAAAGTTTGACAAGTTTGGAAA-
386 CCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTT-GAAAG
* * *
3748 TTCATCCA-AGACCTAAGAGAGAAACAATCCTCACGCAAATAAGTTTTTAATTCTAAGAC-AAAA
1 TTCATCCAGA-ACC-AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAA
* * * * * *
3811 GTTGATAACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTTTCTAACATGGAATGTTC-A
64 CTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCT-TAACATGGAATGTTCGA
3875 GAAAATTGCTCGAAGGAATGGAT
128 -AAAATTGCTCGAAGGAATGGAT
3898 TGATGCGAGC
Statistics
Matches: 1538, Mismatches: 230, Indels: 145
0.80 0.12 0.08
Matches are distributed among these distances:
399 14 0.01
402 17 0.01
403 2 0.00
405 2 0.00
407 1 0.00
410 4 0.00
411 2 0.00
412 56 0.04
413 109 0.07
414 136 0.09
415 3 0.00
416 227 0.15
417 30 0.02
418 38 0.02
419 1 0.00
420 4 0.00
423 1 0.00
425 2 0.00
428 43 0.03
429 75 0.05
430 122 0.08
431 619 0.40
432 30 0.02
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.28
Consensus pattern (429 bp):
TTCATCCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAACT
TGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCTTAACATGGAATGTTCGAAAA
ATTGCTCGAAGGAATGGATCGTCTTGAATACATTAAGGAACCAAAGTTATAAAAGAACTCGTAAA
AGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
TTAATTCAAAGACAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCC
AAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAA
GTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGAAAG
Found at i:6452 original size:74 final size:74
Alignment explanation
Indices: 6331--6480 Score: 273
Period size: 74 Copynumber: 2.0 Consensus size: 74
6321 TGGAGGGATA
*
6331 CAATGTTTCATTCAAGAGTTTTTAAATAAATCAACACATTCATTTATGAATGATGAATGATGGCT
1 CAATGTTTCATTCAAGAGTTTTTAAATAAATCAACACATTCATTTATGAATGATGAACGATGGCT
6396 GTTCACATT
66 GTTCACATT
*
6405 CAATGTTTCATTCAAGAGTTTTTAAATAAATCAACACATTCATTTATGAATGATGAACGATGGTT
1 CAATGTTTCATTCAAGAGTTTTTAAATAAATCAACACATTCATTTATGAATGATGAACGATGGCT
*
6470 GTTCACTTT
66 GTTCACATT
6479 CA
1 CA
6481 TTTGTAACAG
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
74 73 1.00
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (74 bp):
CAATGTTTCATTCAAGAGTTTTTAAATAAATCAACACATTCATTTATGAATGATGAACGATGGCT
GTTCACATT
Found at i:6996 original size:15 final size:15
Alignment explanation
Indices: 6973--7007 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
6963 CTGTTTAGAA
6973 GAAAAGAAAAGAAAT
1 GAAAAGAAAAGAAAT
* *
6988 GAAATGAAATGAAAT
1 GAAAAGAAAAGAAAT
7003 GAAAA
1 GAAAA
7008 ATATCATATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.20, T:0.11
Consensus pattern (15 bp):
GAAAAGAAAAGAAAT
Found at i:8244 original size:18 final size:18
Alignment explanation
Indices: 8210--8246 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
8200 ACTCGTCTAC
*
8210 TTCTAAATGGAGTCAGAA
1 TTCTAAATGGAGACAGAA
*
8228 TTCTAAATGGGGACAGAA
1 TTCTAAATGGAGACAGAA
8246 T
1 T
8247 GCTCCTAAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.38, C:0.11, G:0.24, T:0.27
Consensus pattern (18 bp):
TTCTAAATGGAGACAGAA
Found at i:12748 original size:74 final size:74
Alignment explanation
Indices: 12607--12753 Score: 249
Period size: 74 Copynumber: 2.0 Consensus size: 74
12597 AGGGATACAG
* * * *
12607 TGTTTCATTCAAGAGTTTTTAAATGAATCAAGACATTCATTTATGAATGATGAATGATGGTTGTT
1 TGTTTCATTCAAGAGTTTTTAAACGAATCAACACATTCATTTATGAATGATGAATGATGGCTATT
12672 CACATTCAA
66 CACATTCAA
12681 TGTTTCATTCAAGAGTTTTTAAACGAATCAACACATTCATTTATGAATGATGAATGATGGCTATT
1 TGTTTCATTCAAGAGTTTTTAAACGAATCAACACATTCATTTATGAATGATGAATGATGGCTATT
*
12746 CACTTTCA
66 CACATTCA
12754 TTTTGTAAAG
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
74 68 1.00
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.39
Consensus pattern (74 bp):
TGTTTCATTCAAGAGTTTTTAAACGAATCAACACATTCATTTATGAATGATGAATGATGGCTATT
CACATTCAA
Found at i:13988 original size:15 final size:15
Alignment explanation
Indices: 13970--14019 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
13960 CTCACAACGC
13970 GAGTGTTCGCAACAT
1 GAGTGTTCGCAACAT
**
13985 GAGTGTTCGCGTCAT
1 GAGTGTTCGCAACAT
* * *
14000 GTGTGTCCGTAACAT
1 GAGTGTTCGCAACAT
14015 GAGTG
1 GAGTG
14020 CTCACAACAC
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.20, C:0.18, G:0.32, T:0.30
Consensus pattern (15 bp):
GAGTGTTCGCAACAT
Found at i:14488 original size:216 final size:216
Alignment explanation
Indices: 14104--15177 Score: 1076
Period size: 216 Copynumber: 5.0 Consensus size: 216
14094 GCTCGCATCG
* ** * * * *
14104 TGGATCATCTTCAATATTTTGAGGAACCGAAGTTATTAAAG-AACTTGTAAAAGTTTGACAAGTG
1 TGGATCATCTTCAAAACATTAAGGAACAGAAGTTA-TAACGAAACTCGTAAAAGTTTGACAAGT-
* *
14168 T-GGAAGTTCATCTC-AGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
64 TCAGAAGTTCGTC-CAAGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * * * * * **
14231 ACAAAAATTTGTTTACAAAATGATAAAGTATTTAGACCAAATGATGCGATTTCTTGTTCATGGAA
128 ACAAAAGTTTGATAACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAA
*
14296 TGTTTGAAAAATTGCTCAAAGGAA
193 TGTTCGAAAAATTGCTCAAAGGAA
*
14320 TGGATCATCTTGAAAACATTAAGGAACAGAAGTTATAACGAAACTCGTAAAAGTTTGACAAGTTC
1 TGGATCATCTTCAAAACATTAAGGAACAGAAGTTATAACGAAACTCGTAAAAGTTTGACAAGTTC
* * * * * *
14385 AAAAGCTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATATGCTTTTAATTCAAAGTCC
66 AGAAGTTCGTCCAAGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG-AC
* *
14450 AAAAGTTT-ATAACAAAATGAAAAACTATTT-GAACCAAATGATACGATTTCTCGAGCATGAAAT
130 AAAAGTTTGATAACAAAATGAAAAACTATTTAG-ACCAAATGATGCGATTTCTCGAGCATGGAAT
* *
14513 GTTCAAAAAATTGCTCGAAGGAA
194 GTTCGAAAAATTGCTCAAAGGAA
* ** * * *
14536 TGGAT-AGTCTTCAATATTTTAAGGAACTGAAGTTATAAATGAAA-----AATCAGTTTGACAAG
1 TGGATCA-TCTTCAAAACATTAAGGAACAGAAGTTAT-AACGAAACTCGTAA-AAGTTTGACAAG
* ** * * *
14595 TTCAGAAGTTCATCTTAGTACCAATAGAGAAACAATTCTTACATAAATAAGTTTTTAATTCAAAG
63 TTCAGAAGTTCGTCCAAGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * * ** * * *
14660 ACAAAATTTTGTTTACAAAATGACAAAA-TATTTAGACCAAATGATTTGATTACTTGTGCATGGA
128 ACAAAAGTTTGATAACAAAATGA-AAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGA
* * *
14724 ATATTCGGAAATTTGCTCAAAGGAA
192 ATGTTCGAAAAATTGCTCAAAGGAA
* * * *
14749 TGGATCGTCCT-AAATACATTAAGGAATAGAAGTTATAACGAAACTTGTAAAAGTTTGACAAGTT
1 TGGATCATCTTCAAA-ACATTAAGGAACAGAAGTTATAACGAAACTCGTAAAAGTTTGACAAGTT
** * * *
14813 TGGAGGTTCGTCCAAGAACC-ATGAGAGAAACAATTCTAACGCAAATAAGTTTTTAATTCAAAGA
65 CAGAAGTTCGTCCAAGAACCAAT-AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* * *
14877 CCAAAAG-TTGATAACAAAATAAAAAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAA
129 -CAAAAGTTTGATAACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAA
*
14941 TGTTCGAAAAATTGCTCGAAGGAA
193 TGTTCGAAAAATTGCTCAAAGGAA
* * ** * * ** *
14965 TGGATCGTCTTCAATATTTTAAGGAACCGAAGTTATAA-AAGAACTCAAAAAACTTTGACAAGTT
1 TGGATCATCTTCAAAACATTAAGGAACAGAAGTTATAACGA-AACTCGTAAAAGTTTGACAAGTT
* ** * * *
15029 CAGAAGTTTGTCTTAGAACCAATAGAGAAACAATTCTCACATAAATAAGTTTTTAATTTAATGAC
65 CAGAAGTTCGTCCAAGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * * * * * *
15094 ---ACTTT-TTTACAAAATGACAAACTATTTAGACCAAA-GATGCGATTTCTTGAGCGTAGAATG
130 AAAAGTTTGATAACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATG
*
15154 TTC-AGAAATTTGCTCAAAGGAA
195 TTCGA-AAAATTGCTCAAAGGAA
15176 TG
1 TG
15178 ATTCTCATGT
Statistics
Matches: 702, Mismatches: 130, Indels: 57
0.79 0.15 0.06
Matches are distributed among these distances:
210 1 0.00
211 40 0.06
212 45 0.06
213 150 0.21
214 5 0.01
215 16 0.02
216 420 0.60
217 25 0.04
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (216 bp):
TGGATCATCTTCAAAACATTAAGGAACAGAAGTTATAACGAAACTCGTAAAAGTTTGACAAGTTC
AGAAGTTCGTCCAAGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACA
AAAGTTTGATAACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGT
TCGAAAAATTGCTCAAAGGAA
Found at i:14954 original size:429 final size:430
Alignment explanation
Indices: 14111--15177 Score: 1486
Period size: 429 Copynumber: 2.5 Consensus size: 430
14101 TCGTGGATCA
* * ** *
14111 TCTTCAATATTTTGAGGAACCGAAGTTATTAAAGAACTTGTAAAAGTTTGACAAGTGT-GGAAGT
1 TCTTCAATATTTTAAGGAACCGAAGTTATAAAAGAAC--AAAAAAGTTTGACAAGT-TCAGAAGT
* *
14175 TCATCTCAGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAATT
63 TCATCTTAGAACCAATAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACAAAAATT
* * * * *
14240 TGTTTACAAAATGATAAAGTATTTAGACCAAATGATGCGATTTCTTGTTCATGGAATGTTTGAAA
128 TGTTTACAAAATGACAAAATATTTAGACCAAATGATGCGATTTCTTGTGCATGGAATGTTCGGAA
* *
14305 AATTGCTCAAAGGAATGGATCATCTTGAAAACATTAAGGAACAGAAGTTATAACGAAACTCGTAA
193 ATTTGCTCAAAGGAATGGATCATCCTGAAAACATTAAGGAACAGAAGTTATAACGAAACTCGTAA
* * *
14370 AAGTTTGACAAGTTCAAAAGCTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATATGCT
258 AAGTTTGACAAGTTCAAAAGCTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGCAAATAAGCT
* * *
14435 TTTAATTCAAAGTCCAAAAGTTTATAACAAAATGAAAAACTATTTGAACCAAATGATACGATTTC
323 TTTAATTCAAAGACCAAAAGTTGATAACAAAATAAAAAACTATTTGAACCAAATGATACGATTTC
* *
14500 TCGAGCATGAAATGTTCAAAAAATTGCTCGAAGGAATGGATAG
388 CCAAGCATGAAATGTTCAAAAAATTGCTCGAAGGAATGGATAG
* * **
14543 TCTTCAATATTTTAAGGAACTGAAGTTATAAATGAA-AAATCAGTTTGACAAGTTCAGAAGTTCA
1 TCTTCAATATTTTAAGGAACCGAAGTTATAAAAGAACAAAAAAGTTTGACAAGTTCAGAAGTTCA
* * *
14607 TCTTAGTACCAATAGAGAAACAATTCTTACATAAATAAGTTTTTAATTCAAAGACAAAATTTTGT
66 TCTTAGAACCAATAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACAAAAATTTGT
** * *
14672 TTACAAAATGACAAAATATTTAGACCAAATGATTTGATTACTTGTGCATGGAATATTCGGAAATT
131 TTACAAAATGACAAAATATTTAGACCAAATGATGCGATTTCTTGTGCATGGAATGTTCGGAAATT
* * *
14737 TGCTCAAAGGAATGGATCGTCCT-AAATACATTAAGGAATAGAAGTTATAACGAAACTTGTAAAA
196 TGCTCAAAGGAATGGATCATCCTGAAA-ACATTAAGGAACAGAAGTTATAACGAAACTCGTAAAA
*** * * * *
14801 GTTTGACAAGTTTGGAGGTTCGTCCAAGAACCATGAGAGAAACAATTCTAACGCAAATAAGTTTT
260 GTTTGACAAGTTCAAAAGCTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGCAAATAAGCTTT
*
14866 TAATTCAAAGACCAAAAGTTGATAACAAAATAAAAAACTATTT-AGACCAAATGATGCGATTTCC
325 TAATTCAAAGACCAAAAGTTGATAACAAAATAAAAAACTATTTGA-ACCAAATGATACGATTTCC
* * *
14930 CAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCG
389 CAAGCATGAAATGTTCAAAAAATTGCTCGAAGGAATGGATAG
*
14972 TCTTCAATATTTTAAGGAACCGAAGTTATAAAAGAACTCAAAAAACTTTGACAAGTTCAGAAGTT
1 TCTTCAATATTTTAAGGAACCGAAGTTATAAAAGAA--CAAAAAAGTTTGACAAGTTCAGAAGTT
** * * *
15037 TGTCTTAGAACCAATAGAGAAACAATTCTCACATAAATAAGTTTTTAATTTAATGAC---ACTTT
64 CATCTTAGAACCAATAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACAAAAATTT
* * * * *
15099 -TTTACAAAATGACAAACTATTTAGACCAAA-GATGCGATTTCTTGAGCGTAGAATGTTCAGAAA
129 GTTTACAAAATGACAAAATATTTAGACCAAATGATGCGATTTCTTGTGCATGGAATGTTCGGAAA
15162 TTTGCTCAAAGGAATG
194 TTTGCTCAAAGGAATG
15178 ATTCTCATGT
Statistics
Matches: 561, Mismatches: 68, Indels: 17
0.87 0.11 0.03
Matches are distributed among these distances:
427 41 0.07
428 34 0.06
429 380 0.68
432 106 0.19
ACGTcount: A:0.41, C:0.13, G:0.16, T:0.29
Consensus pattern (430 bp):
TCTTCAATATTTTAAGGAACCGAAGTTATAAAAGAACAAAAAAGTTTGACAAGTTCAGAAGTTCA
TCTTAGAACCAATAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACAAAAATTTGT
TTACAAAATGACAAAATATTTAGACCAAATGATGCGATTTCTTGTGCATGGAATGTTCGGAAATT
TGCTCAAAGGAATGGATCATCCTGAAAACATTAAGGAACAGAAGTTATAACGAAACTCGTAAAAG
TTTGACAAGTTCAAAAGCTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGCAAATAAGCTTTT
AATTCAAAGACCAAAAGTTGATAACAAAATAAAAAACTATTTGAACCAAATGATACGATTTCCCA
AGCATGAAATGTTCAAAAAATTGCTCGAAGGAATGGATAG
Found at i:15639 original size:201 final size:202
Alignment explanation
Indices: 15289--15667 Score: 516
Period size: 201 Copynumber: 1.9 Consensus size: 202
15279 AAATGTTTTT
* * * * *
15289 GAAGGAATGGATCGTCTTGAATACTTTTAAGGAACCAAAGTAATAAAGGATATCGTGAAAGTTTG
1 GAAGGAATGCATCATCTTGAATACTTTCAAGGAACCAAAGTAATAAAAGATATAGTGAAAGTTTG
** * * * *
15354 ACAAGTTCTTAAGTTCGTCCAAGAACCCAAGAGAAACAATTCTTACATAAATATGTTTTTAATTT
66 ACAAGTTCGGAAGCTCGTCCAAGAACCCAAGAGAAACAATTCTCACATAAAGATGTGTTTAATTT
* * *
15419 AAAGACCAAAACTTGTTTATAAAATGAGAAACTATTTAGACCAAATGAAGCAATTTCCCGAGAAA
131 AAAGACCAAAACATGTTTATAAAACGACAAACTATTTAGACCAAATGAAGCAATTTCCCGAGAAA
15484 ATTTCTC
196 ATTTCTC
**
15491 GAAGGAATGCATCATCTTGAATAC-TTCAAGGAACCAAAGTTGTAAAAGA-ACTAGT-AAAGGTT
1 GAAGGAATGCATCATCTTGAATACTTTCAAGGAACCAAAGTAATAAAAGATA-TAGTGAAA-GTT
* *
15553 TGACAAGTTCGGAAGCTCGTCCCAGAA-CCAATCGAGAAACAATTCTCACGTAAAGA-GTGTTTA
64 TGACAAGTTCGGAAGCTCGTCCAAGAACCCAA--GAGAAACAATTCTCACATAAAGATGTGTTTA
*
15616 ATTTAAAGACCAAAACATGTTTATAAAACGACAAACTATTTTGACCAAATGA
127 ATTTAAAGACCAAAACATGTTTATAAAACGACAAACTATTTAGACCAAATGA
15668 TTCGATTACC
Statistics
Matches: 154, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
200 8 0.05
201 104 0.68
202 42 0.27
ACGTcount: A:0.41, C:0.16, G:0.17, T:0.27
Consensus pattern (202 bp):
GAAGGAATGCATCATCTTGAATACTTTCAAGGAACCAAAGTAATAAAAGATATAGTGAAAGTTTG
ACAAGTTCGGAAGCTCGTCCAAGAACCCAAGAGAAACAATTCTCACATAAAGATGTGTTTAATTT
AAAGACCAAAACATGTTTATAAAACGACAAACTATTTAGACCAAATGAAGCAATTTCCCGAGAAA
ATTTCTC
Found at i:16035 original size:215 final size:215
Alignment explanation
Indices: 15480--16316 Score: 825
Period size: 216 Copynumber: 3.9 Consensus size: 215
15470 AATTTCCCGA
* * * * * *
15480 GAAAATTTCTCGAAGGAATGCATCATCTTGAATACTTCAAGGAACCAAAGTTGTAAAAGAACTAG
1 GAAAATTGCTCGAAGGAATGGATCATCTTGAATTCTTTAAGGAA-CAAAGTTATAAAAGAACTCG
* * * * * * *
15545 TAAAGGTTTGACAAGTTCGGAAGCTCGTCCCAGAACCAATCGAGAAACAATTCTCACGTAAA-GA
65 TAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAATAGAGAAACAATTCTCACATAAATAA
* * * ** * * * * * *
15609 GTGTTTAATTTAAAGACCAAAACATGTTTATAAAACGACAAACTATTTTGACCAAATGATTCGAT
130 GTTTTTAATTCAAAGATCAAAAGTTGATAACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* * *
15674 TACCCAAGCATGGAATGTTCG
195 TTCTCGAGCATGGAATGTTCG
* * * * * *
15695 GAAAATTGCTAGAAGTAAAGGATCATCCTAAATTC-TT----ATCAAAGTTATAAAAGAACTCGT
1 GAAAATTGCTCGAAGGAATGGATCATCTTGAATTCTTTAAGGAACAAAGTTATAAAAGAACTCGT
* * *
15755 AAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAAAGAAACAATTTTCA-AGTAAATAA
66 AAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAATAGAGAAACAATTCTCACA-TAAATAA
* * **
15819 GTTTTTAATTC-AATATCAAAAGTTGATAATAAAATGACAAACTATTTAGATAAAACT-ATGCGA
130 GTTTTTAATTCAAAGATCAAAAGTTGATAACAAAATGACAAACTATTTAGACCAAA-TGATGCGA
*
15882 TTTCTCGAGCATGGAATGTTTG
194 TTTCTCGAGCATGGAATGTTCG
* * * * *
15904 GAAAATTGCTTGAAGGAATGGATCATCTTGAATTCTTTGAGGAACTGAAGTTATAAAAGAATTTG
1 GAAAATTGCTCGAAGGAATGGATCATCTTGAATTCTTTAAGGAAC-AAAGTTATAAAAGAACTCG
* * * ** * *
15969 TAAAAGTTTGAGAAGTTCGGAAGTTTGTCTTAGAACCAATAGAGAAACAACTCTTACATAAATAA
65 TAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAATAGAGAAACAATTCTCACATAAATAA
* * * * * *
16034 GTTTTGAATTCAAACATAAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
130 GTTTTTAATTCAAAGATCAAAAGTTGATAACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* * *
16099 TTCTTGTGCATGGAATGTTCA
195 TTCTCGAGCATGGAATGTTCG
* * * * * * *
16120 AAAAATTGCACGAAGGAATGGATCATCTT-TATTACATTAATGAACAAAAATTAT-AATGAAACT
1 GAAAATTGCTCGAAGGAATGGATCATCTTGAATT-CTTTAAGGAAC-AAAGTTATAAAAG-AACT
* * * ** *
16183 CATAAAAGTTTGACAAGTTCAGAAGTTCTTCCAAGAACCAACAGAGAAACAATTCTCACGCAAAC
63 CGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAATAGAGAAACAATTCTCACATAAAT
* * *
16248 AAGTTTTTAATTCTAAGA-CAAAAGTTGATAACAAAATGAAAAACTATTTAGACCAAATGATGTG
128 AAGTTTTTAATTCAAAGATCAAAAGTTGATAACAAAATGACAAACTATTTAGACCAAATGATGCG
16312 ATTTC
193 ATTTC
16317 CCAATGATAT
Statistics
Matches: 502, Mismatches: 106, Indels: 28
0.79 0.17 0.04
Matches are distributed among these distances:
209 157 0.31
210 14 0.03
214 3 0.01
215 158 0.31
216 170 0.34
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.28
Consensus pattern (215 bp):
GAAAATTGCTCGAAGGAATGGATCATCTTGAATTCTTTAAGGAACAAAGTTATAAAAGAACTCGT
AAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAATAGAGAAACAATTCTCACATAAATAAG
TTTTTAATTCAAAGATCAAAAGTTGATAACAAAATGACAAACTATTTAGACCAAATGATGCGATT
TCTCGAGCATGGAATGTTCG
Found at i:18472 original size:215 final size:215
Alignment explanation
Indices: 17804--26587 Score: 7851
Period size: 216 Copynumber: 41.8 Consensus size: 215
17794 TCGTATCACC
* * * * *
17804 CGAGCATAGAATGTTTAGAAAATTGCTCGAAGGAATGGATCGTCTTCAATATTTTAAGGAACCAA
1 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAA
* * ** * * *
17869 AGTTATACAAGAACTTGTAAAAGTTTGACAAGTTCAAAAGTTCATCTCAGAACCAATAGAGAAAC
66 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC-CAAAACCAAGAGAGAAAC
* *
17934 AATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTAGAAAATGACAAACTATTT
130 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTT
*
17999 AGACCAAATGATGCAATTTCT
195 AGACCAAATGATGCGATTTCT
* * * * * * * *
18020 TGTGCATGGAATGTCCGAAAAATTGCTCGAAGGAATGGATCATCCTGAATACATTAAGGAA-TAG
1 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA-
* * * *
18084 AAGTTATAACAGAACTCGTAAAAGTTTGCCAAGTTCAGAAGTTAGTCCAAGAACCAAGAGAGAAA
65 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA-AACCAAGAGAGAAA
* * * *
18149 CAATTCTCACGTAAATAAG---AT-ATTCAAAGACCAAAATTTGATAACAAAATGA-ATAACTAT
129 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACA-AACTAT
*
18209 TTAGACCAAATGATGCGATTTTT
193 TTAGACCAAATGATGCGATTTCT
* * * * *
18232 CGAGCATAGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTCAATATTTTAAGGAACCAA
1 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAA
* * * *** * * *
18297 AGTTATAAAAAAACTCATAAAAGTTTGAAAAGTTTAAAAGTTCGTCTCAAAACTAATAGGGAAAC
66 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC-CAAAACCAAGAGAGAAAC
* * * * *
18362 AATTCTCATGTAAATAAGTTTTTAATTC-AAGATCAAAAGTTGATAACAAAATGACAAACTATTT
130 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTT
*
18426 AGAACAAACT-ATGCGATTTCT
195 AGACCAAA-TGATGCGATTTCT
* * * * * *
18447 CGAGCATAGAATGTTCAAAAAATTGCTCAAAGGAATGGATCATCTTGAATTCTTTAAGGAATCGA
1 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAA
* * * * *
18512 AGTTATAAACGAACTCGTAAAGGTTTGACAAGTTTGGAAGTTCGTCTAAGAACCAAGAGTGAAAC
66 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA-AACCAAGAGAGAAAC
* *
18577 AATTCTCACGTAAATAAGTTTTTAATTCAAAGA-C-AAACTTTTTTATAAAATGACAAACTATTT
130 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTT
*
18640 AGACCAAATGATGCGATTTCA
195 AGACCAAATGATGCGATTTCT
* * ** * * ** * *
18661 CGAGAATGAAATGTTTGAAAATTTGCTCGAATGAATTAATCGTCTTGAATAGTTTAAGGTACCAA
1 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAA
* * * * *
18726 AG---TAAAAG--TTTG-ACAAGTTGGA-AAGTTC----G-TCGT--AGAACC-A-AGAGAAACA
66 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAAACCAAGAGAGAAACA
* * ** * * *
18775 ATTCTCATGTAAATGAGTTTTTAATTCAAAGAGTAAAACATCTTTACAAAATGACAAATTATTTA
131 ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTA
* *
18840 GACAAAATGATTC-ATTTTCT
196 GACCAAATGATGCGA-TTTCT
* * * *
18860 CGAGCATGGAGTGTTCAAAAAAATT-TTCAAAGGAATGGATCGTCTTGAATACTTTTAAGGAACA
1 CGAGCATGGAATGTTC-AAAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC-TTTAAGGAACC
* * * * * ** ** * *
18924 AAAATAATAAAGGATCTTGTGTAAGTTTGACAAGTTCTTAAGTTTGTCCAAGAACCCA-AGAGAA
64 AAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA-AACCAAGAGAGAA
* * ** * **
18988 ACAATTCTCACGTAAATACGTTTTTAATTCAAAGAACAAAACTTGTTTGGAAAATGAGAAACCGT
128 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT
*
19053 TTAGACCAAATGAAGCGA-TTC-
193 TTAGACCAAATGATGCGATTTCT
* * * * *
19074 C---C---G-A-G-----AAAATTGCTCAAAGGAATGCATCATCTTAAATACTTTAAGGAA-TAG
1 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA-
* * * * * * *
19125 AAGTTATAAAAGAACTAGTAAAAGCTTAATAAGTTCGGAAGTTCATCCCAAAACCAATAGAGAAT
65 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGT-CCAAAACCAAGAGAGAAA
* * * * *
19190 CAATTCTCACGTAAA-AAGTATTTAATTTAAATACCAAAACCTATTTACAAAATGACAAACTATT
129 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
* * *
19254 TAGACCAAATGATTCGATTACC
194 TAGACCAAATGATGCGATTTCT
*
19276 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAA
1 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAA
* * * *
19341 AGTTATAAAGGAACTCGTAAAAGTTTGACCAGTTCGGTAGTTTGTCCAAGAACCAAGAGAGAAAC
66 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA-AACCAAGAGAGAAAC
*
19406 AATTCTCACGTAAATAAGTTTTTAATTCAAAGA-C-AAACTTTTTTACAAAATGACAAACTATTT
130 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTT
*
19469 AGACCAAATGATGCGATTTCA
195 AGACCAAATGATGCGATTTCT
* ** * * * * *
19490 AGATAATAGAATGTTCGAAAAATTGCTCGAAGGAATTGATCGTCTTGAATAGTTTAAGGTA-C--
1 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAA
* * * * * *
19552 -----T---A-AA---GTAAAAGTTTGATAAATTCGAAAGTTCATCCTAGAA-TAA-AGAGAAAC
66 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC-AAAACCAAGAGAGAAAC
* * * **** * *
19603 AATTCTCACATAAATGAGGCTTTTAATTCAAAGAGTGTAACATCTTTACAAAATGACAAACTATT
130 AATTCTCACGTAAAT-AAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
* * *
19668 TAGA-CAAAGTGATTCAATTTCC
194 TAGACCAAA-TGATGCGATTTCT
* *
19690 CGAGCATGGAGTTTTCAAAAAAATT--TCGAAGGAATGGATCGTCTTGAATACTTTTAAGGAACC
1 CGAGCATGGAATGTTC-AAAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC-TTTAAGGAACC
* * * * ** *
19753 AAAGTAATAAAGGATCTCGTGAAAGTTTGACAAGTTCTTAAGTTCGTCCAAGAACCCA-AGAGAA
64 AAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA-AACCAAGAGAGAA
* * * * *
19817 ATAATTCTCACG-ATAATACGTTTTTAATTTAAAGACCAAAAATT-TTTAGAAAATGACAAACTA
128 ACAATTCTCACGTA-AATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTA
* *
19880 TTTAGACCGAATGAAGCGATTTCT
192 TTTAGACCAAATGATGCGATTTCT
* * * *
19904 ----C---G-A-G-----AAAATTGCTCGAAAGAATGCG-TCATCTTGAATACTTTAA-CAAACA
1 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATG-GATCGTCTTGAATACTTTAAGGAACCA
* * * ** *
19953 TAAGTTATAAAAGAACTAGTAAAAGTTTGATAAGTTCGGAAGTTCATCCCAAAAAGAATAGAGAA
65 -AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGT-CCAAAACCAAGAGAGAA
* * * * *
20018 ACAATTCTCACTTAAA-AAGTGTTTAATTTAAAGACCAAAACCTGTTTACAAAAAGACAAACTAT
128 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT
* * * *
20082 TTAGACCAAATGATTCAATTACC
193 TTAGACCAAATGATGCGATTTCT
* * * * * * * *
20105 CGAGCATGGGACGTTCGAAAAATTACTAGAAGGACTGGATCGTCTTGAATGCTTTAAGGAACTAA
1 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAA
* * * *
20170 AGTTATAAAGGAACTCGTAAAAGTTTGACCAGTTTGGAAGTTCGTCCAAGAACGAAGAGAGAAAC
66 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA-AACCAAGAGAGAAAC
* * * *
20235 AATTCTCACGTAGATAAGTTTTTAATTCAAAGA-C-AAACTTTTTTTTACAAAATAACAGACTAT
130 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAC--TTGTTTACAAAATGACAAACTAT
* *
20298 TTAGACCAAATGATGTGATTTCA
193 TTAGACCAAATGATGCGATTTCT
* * * * * *
20321 CTAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATTGATAGTCTTGAATACTTTAAGGTACCAA
1 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAA
* * * * * * *
20386 AG---TAAAAG--TTTG-AAAAATTCGA-AAGTTC----G-TC--CCAGAACCAAGGGAAAAACA
66 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAAACCAAGAGAGAAACA
* * * *
20437 ATTCTCACGTAAATGAGTTTTTAATTCAAAGACCAAAACATGTTTACAGAATGACAAAATATTTA
131 ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTA
* * * *
20502 GACAAAATGATTCAATTTCC
196 GACCAAATGATGCGATTTCT
* * * *
20522 CGAGCATGGAATGTTCGAAAAATTGTTCAAAGGAATGGATCGTCTTGAATACTTTTAAGGAA-TA
1 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC-TTTAAGGAACCA
* * * * * *** * *
20586 GAAGTAATAAAGGATCTTGTAAAAGTTAGACAAGTTCTTCAGTTTGTCCAAGAACCTA-AGAGAA
65 -AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA-AACCAAGAGAGAA
* * * * * *
20650 ACAATTCTCACGTAAATATGTTTTTAATTCAAAGACTAAACCTTTTTTAGAAAATGATAAACTAT
128 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT
*
20715 TTAGACCAAATGATTCGATTTCT
193 TTAGACCAAATGATGCGATTTCT
* * *** * * *
20738 TGTGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGGATCGTGTTGAATACATTAAGGAACCGA
1 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAA
** * *
20803 AGTTATAACGGAACTCGTAAAAGTTTAACAAGCTT-AGAAGTTCGTCCAAGAACCAAGAGAGAAA
66 AGTTATAAAAGAACTCGTAAAAGTTTGACAAG-TTCGGAAGTTCGTCCAA-AACCAAGAGAGAAA
* * * * * *
20867 CAATTCTCACGTAAAT-A--TGTT-ATTCAAATACCAAAAGTTGATAACAAAATGAAAAACTATT
129 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
* *
20928 TAGACCAAATTATGTGATTTCT
194 TAGACCAAATGATGCGATTTCT
* * * * * * * **
20950 CGAGCATGGAATGTTTAGAAAATTGCTCGAGGGAATTGATTGTCTTCAATATTTTAAGGAACTGA
1 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAA
* * *
21015 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCTCAGAACCAATAAAGAAAC
66 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC-CAAAACCAAGAGAGAAAC
* * * * * *
21080 AATTCTCATGTAAATAAGTTTTTAATTC-AAGATCAAGAGTTGATAACAAAATGACAAACTATTT
130 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTT
* **
21144 AGACAAAACT-ATGTTATTTCT
195 AGACCAAA-TGATGCGATTTCT
* * * *
21165 CTAGC-----ATGTTCAAAAAAATTGCTTGAAGGAATGGATCGTCTTGAATTCTTTAAGGAACCG
1 CGAGCATGGAATGTTC-AAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA
* * * *
21225 AAGCTATAAAACAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAACAACCAAGAGTGAAA
65 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA-AACCAAGAGAGAAA
*
21290 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-CACAAACTTTTTTACAAAATGACAAACTAT
129 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA-AAACTTGTTTACAAAATGACAAACTAT
*
21354 TTAGACCAAATGATGCGATTTCA
193 TTAGACCAAATGATGCGATTTCT
* * * * * * *
21377 CAAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATTGATTGTCTTTAATAGTTTAA-G------
1 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAA
* *
21435 -G---TAACA-AA---GTAAAAGTTTGACAAGTTCGGAAGTTCGTCGCAGAACCAAGAGAGAAAC
66 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC-CAAAACCAAGAGAGAAAC
* * ** * * *
21492 AATTCTCACGTAAATGAGTTTTTAATTCAAGGAGTAAAACATCTTTATAAAATGACAAACTATTT
130 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTT
* * * *
21557 AGACAAAATGATTCAATTTCC
195 AGACCAAATGATGCGATTTCT
* *
21578 CGAGCATGGAGTGTTC-AAAAATT-TTCGAAGGAATGGATCGTCTTGAATACTTTTAAGGAACCA
1 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC-TTTAAGGAACCA
* * * * * ** * *
21641 AAGTAAGAAAGGATCTCGTGAAAGTTTGACAAGTTCTTAAGTTCATCCAAGAACCCA-AGAGAAA
65 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA-AACCAAGAGAGAAA
* * * * *
21705 CAATTCTTACGT-AATATGTTTTTAATTTAAAGACCAAAACTTGTTTATAAAATGAGAAACTATT
129 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
* **
21769 TAGACCAAATGAAGTAATTTC-
194 TAGACCAAATGATGCGATTTCT
* * * *
21790 C---C---G-A-G-----AAAATTTCTCGAAGGAATGCATCATCTTGAATACTTTAAGGAACCGA
1 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAA
* * * * * * *
21842 AGTTATAAAAGAACTAGTAAAGGTTTGACAAGTTTGAAAGTTTGTCCCATAACCAACAGAGAAAC
66 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGT-CCAAAACCAAGAGAGAAAC
* *
21907 AATTCTCACGTAAA-AAGTTTTTAATTTAAAGACCAAAACCTGTTTACAAAAT-ACAAACTATTT
130 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTT
* * *
21970 AGACCAAATGATTCGATTACC
195 AGACCAAATGATGCGATTTCT
* * * *
21991 CGAGTATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCGTCTTGAATATTTTAAGGAACCAA
1 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAA
* *
22056 AGTTATAAAGGAACTCGTAAGAGTTTGACAAGTT-GGAAAGTTCGTCCAAGAACCAAGAGAGAAA
66 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGG-AAGTTCGTCCAA-AACCAAGAGAGAAA
* *** * *
22120 CAATTCTCACGTAAATAAGTTTTTAATCCAAAGACACAATTTTTTTTTTATAAAATGACAAACTA
129 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC-CAA-AACTTGTTTACAAAATGACAAACTA
* * *
22185 TTTAGACGAAATGATGTGATTTCA
192 TTTAGACCAAATGATGCGATTTCT
* * * * * *
22209 AGAGAATTGAATGTTCGAAAAATTGCTCGAAGGAATTGATCGTCTTGAATACTTTAAGGTACC--
1 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAA
* * * * *
22272 ---------A-AA---GTAAAAGTTTGACAAGTTCGGAAGTTCATCCCAGAACTAGGAAAGAAAC
66 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGT-CCAAAACCAAGAGAGAAAC
* * * * *
22324 AATTCTCACGTAAATTAGTTTTT-ATTCAAAGACCAAAACATGTTTACAGAATGACAAAATTTTT
130 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTT
* * * *
22388 AGACAAAATGATTCAATTTCC
195 AGACCAAATGATGCGATTTCT
* * ** *
22409 CTAGCATGGAATGTTCAAAAAATTGTTTAAAGGAATGGATTGTCTTGAATACTTTTATA-GAACC
1 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC-TTTA-AGGAACC
* * * * ***
22473 AAAGTAAT-AAAGGATTGTGTAAAAGTTTGACAAGTTCTTCAGTTCGTCCAAGAACC-A-AGAGA
64 AAAGTTATAAAAGAACT-CGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA-AACCAAGAGAGA
* * *
22535 AACAATTCTCACGTAAATACGTTTTTAATTCAAAGACCAAAACTTGTTTAGAATATGACAAACTA
127 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTA
* *
22600 TCTA-ACCAAATGATGTGATTTC-
192 TTTAGACCAAATGATGCGATTTCT
* * *
22622 C---C---G-A-G-----AAAACTGCGT-GAAGGAATGGATCGTCTTGAATAATTTATGGAACCA
1 CGAGCATGGAATGTTCAAAAAATTGC-TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA
* * * * **
22673 ATGTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCGGATGTTCGTCCATGAACCTTGAGAGAAA
65 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCA-AAACCAAGAGAGAAA
* * * * *
22738 TAATTCTCATGTAAATAAGTTTTTAAATT-AAAGACCAAAAGTTGATAACAAAATGACAAACTAT
129 CAATTCTCACGTAAATAAGTTTTT-AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT
* *
22802 TTAGACTAAACT-ATGCGATTTTT
193 TTAGACCAAA-TGATGCGATTTCT
** * * * * *
22825 CGAGCATGGAATGTTCGGAAAATTGCTTGAAGGAATGGATCATCTTGAATTCTTTAAGGAATCAT
1 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAA
* * * * *
22890 AGTTATAAAAGAAGTCGTAAAAGTTTGACAAGTTCAGAAGTTTGTCCAAGAACCTAGAGAAAAAC
66 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA-AACCAAGAGAGAAAC
* * * * * *
22955 AATTCTCACGTAAATAAGTTTTTAATTC-AAGATCAAAAGTTGATAACAAAAAT-AAAAAGTATT
130 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTAC-AAAATGACAAACTATT
*
23018 TAGACAAAACT-ATGCGATTTC-
194 TAGACCAAA-TGATGCGATTTCT
*
23039 CTGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATTCTTTAAGGAACCA
1 C-GAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA
* * *
23104 AAGTTATAAAAGAACTCGT-AAAGATTTGACAAGTTCGGAAGTTTGTCTCAGAACCAACAGAGAA
65 AAGTTATAAAAGAACTCGTAAAAG-TTTGACAAGTTCGGAAGTTCGTC-CAAAACCAAGAGAGAA
* * * *
23168 ACAATTCTCATGTAAATAAGTTTTTAATTCAAACACAAAAATTTGTTTACAAAATGACAAACTAT
128 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT
* *
23233 TTAGACCAAATAATGTGATTTCT
193 TTAGACCAAATGATGCGATTTCT
* * * * * * * * * *
23256 TGTA-CATGAAAAGTTCGAAAATTTGCTTGAAGGAATGAATCGTCTTGAATACATTAATGAACCG
1 CG-AGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA
** * *
23320 AAGTTATAACGGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAAAACCAAGAGAGAAA
65 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCC-AAAACCAAGAGAGAAA
* ** * * ** * * *
23385 CAATTCTAACACAAATAAGTTTTTAATTCTAAGA-CAAAAGTTAATAACAAAATGAAAAATTATT
129 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
* *
23449 TAGACCAAA-GATGCTATTTCC
194 TAGACCAAATGATGCGATTTCT
* * * *
23470 CGAGCATGGAATATT-AAGAAAATTGCTCGAAGGAATGGATTGTCTTCAATATTTTAAGGAACCA
1 CGAGCATGGAATGTTCAA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA
* * **
23534 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCTCAGAACC--TTGAGAAA
65 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC-CAAAACCAAGAGAGAAA
* * ** * *
23597 CAATTCTCACATAAGTAAAATTTTAATTCAAAGACAAAAATTTGTTTACAAAATGACAAACTATT
129 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
*
23662 TAGACCAAATGATACGATTTCT
194 TAGACCAAATGATGCGATTTCT
* * * *
23684 TGTGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATTGTCTTGAATACATTAAGGAACCAA
1 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAA
** *
23749 AGTTATAACGGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAAC
66 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA-AACCAAGAGAGAAAC
* * * * * * * *
23814 AATTCTCACGCAAATAAGCTTTTAATTAAAAGTCCAAAAGTTGATAACAAAATGAAAAACTATTT
130 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTT
*
23879 GGACCAAATGATGCGATTTC-
195 AGACCAAATGATGCGATTTCT
* * * * **
23899 CAGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAAGGGATCGTCTTCAATATTTTAAGGAACTG
1 C-GAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA
* ** *
23964 AAGTTATAAAAGATCTCGTAAAAGTTTGACAAGTTTAGAAGTTCGTCTCAAAACCAATAGAGAAA
65 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC-CAAAACCAAGAGAGAAA
* * * * *
24029 CAATTCTTATGTAAACAAGTTTTTAATTCAAAGACAAAAAATTGTTTACAAAATGACAAACTATT
129 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
* *
24094 TAGACTAAATGATGTGATTTCT
194 TAGACCAAATGATGCGATTTCT
* * * * * * * *
24116 TGTGCATGAAATATTCAAAAAATTGCTCAAAGGAATGGATCGTCTTCAATACATTAAGGAATCAA
1 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAA
* * * *
24181 TGTTAT-AACGAAACCCGTAAAAGTTTGACAAGTT-GAGAAGTTCGTCCAAGAACCTAGAGAGAA
66 AGTTATAAAAG-AACTCGTAAAAGTTTGACAAGTTCG-GAAGTTCGTCCAA-AACCAAGAGAGAA
* * * * * * *
24244 ACAATTCTCACGTAAATAAGTTTTTAATTC-AAGATCAAAAGTTGATAACAAAAAGAAAAAGTAT
128 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT
* *
24308 TTAGACAAAACT-ATGCGATTTCC
193 TTAGACCAAA-TGATGCGATTTCT
* *
24331 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATTGTCTTGAATTCTTTAAGGAACCAA
1 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAA
** * ** * * *
24396 AGTTATAAAAGAACTCAAAAAAGTTTGAAAAGTTCAAAAGTTCGTCTTAAAACCAATAGAGAAAT
66 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC-CAAAACCAAGAGAGAAAC
* * *
24461 AATTTTCACGTAAATAAGTTTTTAATTCAAAGACAAAAAATTTGTTTACAAAATTGACAAACTAT
130 AATTCTCACGTAAATAAGTTTTTAATTCAAAGAC-CAAAACTTGTTTACAAAA-TGACAAACTAT
*
24526 TTAGACCAAATGATTCGATTTCT
193 TTAGACCAAATGATGCGATTTCT
* * * * * *
24549 TGTA-CATGGAGTGTTCAAAAAATTGCTCAAAGGAATAGATCGTCTTGAATACATTAAGGAACCG
1 CG-AGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA
* ** **
24613 AAGTTAT-AACGAAACTCGTAAAAGTTTGAGTAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAA
65 AAGTTATAAAAG-AACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA-AACCAAGAGAGAA
* * * * *
24677 ATAATTCTCATGAAAATTAGTTTTTAATTCAAAGA-CACAAACTTTTTTACAAAATGACAAACTA
128 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA-AAACTTGTTTACAAAATGACAAACTA
*
24741 TTTAGACCAAATGTTGCGATTTC-
192 TTTAGACCAAATGATGCGATTTCT
* * *
24764 CTGAGCATGAAATGTTCGAAAAATTGCTCGAAGGAATGAATCGTCTTGAATACTTTAA-G-----
1 C-GAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA
* * *
24823 --G---TAACA-AA---GTAAAAGTTTGACAAGTTCGAAAGTTTGTCCCAAAACCAAGAGAGAAA
65 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGT-CCAAAACCAAGAGAGAAA
* ** *
24879 CAATTCTCACGTAAATGAGTTTTTAATTCAAAGAGTAAAA-TATTTTTACAAAATGACAAACTAT
129 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACT-TGTTTACAAAATGACAAACTAT
* *** *
24943 TTAGACAAAATGATTAAATTTCC
193 TTAGACCAAATGATGCGATTTCT
* * * * * *
24966 CTAACATGGAATGTTCAGAAAAATT-TTCGGAGGAATGGATCGTCTTTAATGCTTTAAGGAACCA
1 CGAGCATGGAATGTTCA-AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA
* * * * ** * *
25030 AAGTAATAAAGGATCTCGTGAAAGTTTGACAAGTTCTTAAGTTCATCCAAGAACCCA-AGAGAAA
65 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA-AACCAAGAGAGAAA
* * * * * *
25094 GAATTCTAAGGTAAATATGTTTTTAATTCAAAGACC--AA-TTGGTTTAGAAAATGGCAAACTAT
129 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTT-GTTTACAAAATGACAAACTAT
*
25156 TTAGACCAAATGAAGCGA-TT-T
193 TTAGACCAAATGATGCGATTTCT
* * * * * *
25177 C---C-T-G-A-G-----AAAATTGCACAAAGGAATGCAACGTCTTGGATACTTTAAGAAACCAA
1 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAA
* *
25230 AGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCCAAAACCAATAGAGAAAC
66 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGT-CCAAAACCAAGAGAGAAAC
* * * *
25295 AATTCTCACGTAAA-AAGTTTTTAATTTAAAGACCAAACCCTGTTTACATAATGACAAACTATTT
130 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTT
* * * * *
25359 GGATCAAATGATTCGATTACC
195 AGACCAAATGATGCGATTTCT
* * * *
25380 CGAGCATGGAATGTTCAGAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTCAAGGAACCGA
1 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAA
* * * * * *
25445 AGTTATAAAGGAACTCGTAAAAGTTTGACAGGTTTGGAAGCTCATCCAAGAACCCA-AGAGAAAC
66 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA-AACCAAGAGAGAAAC
* * * * *
25509 AATTTTCACGTAAATACGTTTTAAATGCAAAGACCAAAACTTGTTTAGAAAATGACAAACTATTT
130 AATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTT
*
25574 AGACCAAATGATGTGATTTCT
195 AGACCAAATGATGCGATTTCT
* * *** * * ** * *
25595 TGTGCATGGAATGTTTGGAAAATTGCTTGAAAGAATGGATTTTCTTGAATACATTAAGGAACCGA
1 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAA
* * *
25660 AGTTATAATAGAACTCGTAAAAGTTTGCCAAGTTCAGAAGTTCGT------CC---A-AG----A
66 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAAACCAAGAGAGAAACA
* * * *
25711 ATTCTCACGTAAATAAG---TT-ATTCAAAGACCAAAAGTTGATAACAAAATGAAAAACTATTTA
131 ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTA
* *
25772 GACCAAATGATGCAATTTTT
196 GACCAAATGATGCGATTTCT
* * * * * *
25792 CGAGCATGGAATGTT-AGGAAAATTGCTTGAAGAAATGGATCGTTTTCAATATTTTAAGGAACCA
1 CGAGCATGGAATGTTCA-AAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA
* * * * *
25856 AAGTTATAAAAAAAACTCGTAAAAAGTTCGACAAGTTCGGAAGTTCGTCTCGAAACCAATAAAGA
65 AAGTTAT-AAAAGAACTCGT-AAAAGTTTGACAAGTTCGGAAGTTCGTC-CAAAACCAAGAGAGA
* * * * * * *
25921 AACAATTCTCATGTAAATAAGTTTTTAATTC-AAGATCAAAAGTTGGTAACAAAATGACAAGCTT
127 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTA
* *
25985 TTTAGACAAAACT-ATGTGATTTAC-
192 TTTAGACCAAA-TGATGCGATTT-CT
* * * * *
26009 CGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCCTTTTGAATTCTTTAA-GAGACCG
1 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA-ACCA
* * * * * * *
26073 GAGTTATAAAAGAATTCATAAAGGTTTGACAAGTTCGGAAGTTCGTCTAAGAACCAAGGGTGAAA
65 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA-AACCAAGAGAGAAA
* * *
26138 CAATACTCACGTAAATAAGTTTTTAATTCAAAGA-TACAAACTTTTTTTACAAAATGACAAACTA
129 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA-AAAC-TTGTTTACAAAATGACAAACTA
*
26202 TTTAGACCAAATGATGCGATTTCA
192 TTTAGACCAAATGATGCGATTTCT
** * * * * *
26226 CGATAATGGAATGTTCGAAAAATTGTTCGAAGGAATTGATCGTCTTGAATAGTTTAAGG-TCC--
1 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAA
*
26288 ---------A-AA---GTAAAAGTTTGACAAGTT-GGAAAGTTTGTCGCAAAACCAAGAGAGAAA
66 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGG-AAGTTCGTC-CAAAACCAAGAGAGAAA
* * ** * *
26339 CAATTCTCATGTAAATGAGTTTTTAATTCAAAGAGTAAAACATCTTTACAAAATGACAAACTATT
129 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
** * ** *
26404 TAGAAAAAAAGAT-TAATTTCC
194 TAGACCAAATGATGCGATTTCT
* * * ** * * *
26425 CGAGCATGGAGTGTTCGAAAATTTTTTTGATGGAATGGATCATCTTGAATACTTTTAAGGAACCA
1 CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC-TTTAAGGAACCA
* * * * ** *
26490 AAGTAATAAAGGATCTCGTGAAAGTTTGACAAGTTCTTAAGTTCGTCCAAGAACCCA-AGAGAAA
65 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAA-AACCAAGAGAGAAA
*
26554 -AATTCTCACGTAAATAGGTTTTTAATTCAAAGAC
129 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
26588 TGATATGAGC
Statistics
Matches: 6953, Mismatches: 1234, Indels: 764
0.78 0.14 0.09
Matches are distributed among these distances:
197 171 0.02
198 37 0.01
199 372 0.05
200 517 0.07
201 818 0.12
202 76 0.01
203 71 0.01
204 15 0.00
205 21 0.00
206 20 0.00
207 19 0.00
208 27 0.00
209 20 0.00
210 23 0.00
211 142 0.02
212 436 0.06
213 156 0.02
214 699 0.10
215 1395 0.20
216 1415 0.20
217 252 0.04
218 250 0.04
219 1 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.29
Consensus pattern (215 bp):
CGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAA
AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAAACCAAGAGAGAAACA
ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTA
GACCAAATGATGCGATTTCT
Found at i:19262 original size:200 final size:206
Alignment explanation
Indices: 17822--26222 Score: 3627
Period size: 215 Copynumber: 39.9 Consensus size: 206
17812 GAATGTTTAG
* * * * * * *
17822 AAAATTGCTCGAAGGAATGGATCGTCTTCAATATTTTAAGGAACCAAAGTTATACAAGAACTTGT
1 AAAATTGCTCAAAGGAATGCATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTAGT
* * ** * *
17887 AAAAGTTTGACAAGTTCAAAAGTTCATCTC-AGAACCAATAGAGAAACAATTCTCATGTAAATAA
66 AAAAGCTTAACAAGTTCGGAAGTTCATC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * *
17951 GTTTTTAATTCAAAGACCAAAACTTGTTTAGAAAATGACAAACTATTTAGACCAAATGATGCAAT
130 GTTTTTAATTCAAAGA-CAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
* *
18016 TTCTTGTGCATGGAATGTCCGA
194 TAC---CGCA--GAA--T--GA
* * * * * * * *
18038 AAAATTGCTCGAAGGAATGGATCATCCTGAATACATTAAGGAA-TAGAAGTTATAACAGAACTCG
1 AAAATTGCTCAAAGGAATGCATCATCTTAAATACTTTAAGGAACCA-AAGTTATAAAAGAACTAG
* ** *
18102 TAAAAGTTTGCCAAGTTCAGAAGTT-AGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
65 TAAAAGCTTAACAAGTTCGGAAGTTCA-TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * *
18166 AG---AT-ATTCAAAGACCAAAATTTGA-TAACAAAATGA-ATAACTATTTAGACCAAATGATGC
129 AGTTTTTAATTCAAAGA-CAAAACTT-ATTTACAAAATGACA-AACTATTTAGACCAAATGATGC
* *
18225 GATTTTTCGAGCATAGAATGTTCGA
191 GA--TTAC-CGC--AGAA---T-GA
* * * * *
18250 AAAATTGCTCAAAGGAATGGATCGTCTTCAATATTTTAAGGAACCAAAGTTATAAAAAAACTCA-
1 AAAATTGCTCAAAGGAATGCATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACT-AG
* *** * * * * *
18314 TAAAAGTTTGAA-AAGTTTAAAAGTTCGTCTCAA-AACTAATAGGGAAACAATTCTCATGTAAAT
65 TAAAAGCTT-AACAAGTTCGGAAGTTCATC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * *
18377 AAGTTTTTAATTC-AAGATCAAAAGTTGA-TAACAAAATGACAAACTATTTAGAACAAACT-ATG
128 AAGTTTTTAATTCAAAGA-CAAAACTT-ATTTACAAAATGACAAACTATTTAGACCAAA-TGATG
*
18439 CGATTTCTCGAGCATAGAATGTTCAA
190 CGATTAC-C--GC--AGAATG----A
* * * * * * *
18465 AAAATTGCTCAAAGGAATGGATCATCTTGAATTCTTTAAGGAATCGAAGTTATAAACGAACTCGT
1 AAAATTGCTCAAAGGAATGCATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTAGT
* * * * * * *
18530 AAAGGTTTGACAAGTTTGGAAGTTCGTCTAAGAACCAAGAGTGAAACAATTCTCACGTAAATAAG
66 AAAAGCTTAACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * *
18595 TTTTTAATTCAAAGAC-AAACTTTTTTATAAAATGACAAACTATTTAGACCAAATGATGCGATTT
131 TTTTTAATTCAAAGACAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTA
18659 CACG-AGAATGAAA
196 C-CGCAGAATG--A
* * ** * * * *
18672 TGTTTGAAAATTTGCTCGAATGAATTAATCGTCTTGAATAGTTTAAGGTACCAAAG---T---A-
1 ------AAAA-TTGCTCAAAGGAATGCATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAG
* * ** *
18730 AA--AGT------TTGACAAGTT-GGAAAGTTCGTCGTAGAACC-A-AGAGAAACAATTCTCATG
59 AACTAGTAAAAGCTTAACAAGTTCGG-AAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACG
* * * * * *
18784 TAAATGAGTTTTTAATTCAAAGAGTAAAACATCTTTACAAAATGACAAATTATTTAGACAAAATG
123 TAAATAAGTTTTTAATTCAAAGA-CAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATG
* * *
18849 ATTC-ATTTTCTCGAGCATGGAGTGTTCAAA
187 ATGCGA-TTAC-C--GCA--GAATG-----A
* * * * * * * * * *
18879 AAAATT-TTCAAAGGAATGGATCGTCTTGAATACTTTTAAGGAACAAAAATAATAAAGGATCTTG
1 AAAATTGCTCAAAGGAATGCATCATCTTAAATAC-TTTAAGGAACCAAAGTTATAAAAGAACTAG
** * * ** ** * *
18943 TGTAAGTTTGACAAGTTCTTAAGTTTGTCCAAGAACCCA-AGAGAAACAATTCTCACGTAAATAC
65 TAAAAGCTTAACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* ** * ** *
19007 GTTTTTAATTCAAAGAACAAAACTTGTTTGGAAAATGAGAAACCGTTTAGACCAAATGAAGCGAT
130 GTTTTTAATTCAAAG-ACAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
19072 T-CC-C-G-A-G-
194 TACCGCAGAATGA
*
19079 AAAATTGCTCAAAGGAATGCATCATCTTAAATACTTTAAGGAA-TAGAAGTTATAAAAGAACTAG
1 AAAATTGCTCAAAGGAATGCATCATCTTAAATACTTTAAGGAACCA-AAGTTATAAAAGAACTAG
* * *
19143 TAAAAGCTTAATAAGTTCGGAAGTTCATCCCAA-AACCAATAGAGAATCAATTCTCACGTAAA-A
65 TAAAAGCTTAACAAGTTCGGAAGTTCAT-CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * *
19206 AGTATTTAATTTAAATACCAAAACCTATTTACAAAATGACAAACTATTTAGACCAAATGATTCGA
129 AGTTTTTAATTCAAAGA-CAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
19271 TTACCCGAGCATGGAATGTTCAA
193 TTA-CC--GCA--GAATG----A
* * * * *
19294 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAGGAACTCGT
1 AAAATTGCTCAAAGGAATGCATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTAGT
* * * * **
19359 AAAAGTTTGACCAGTTCGGTAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
66 AAAAGCTTAACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* *
19424 TTTTTAATTCAAAGAC-AAACTTTTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
131 TTTTTAATTCAAAGACAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTA
* *
19488 CAAGATAATAGAATGTTCGA
196 C-CG----CAGAA---T-GA
* * * * * *
19508 AAAATTGCTCGAAGGAATTG-ATCGTCTTGAATAGTTTAAGGTACTAAAG---TAAAAG---T--
1 AAAATTGCTCAAAGGAA-TGCATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTAG
* * * * * *
19564 T---TG-AT-A-AA-TTCGAAAGTTCATCCTAGAA-TAA-AGAGAAACAATTCTCACATAAATGA
65 TAAAAGCTTAACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT-A
* * *** * * * *
19620 GGCTTTTAATTCAAAGAGTGTAACATCTTTACAAAATGACAAACTATTTAGA-CAAAGTGATTCA
129 AGTTTTTAATTCAAAGA-CAAAACTTATTTACAAAATGACAAACTATTTAGACCAAA-TGATGCG
* * *
19684 ATTTCCCGAGCATGGAGTTTTCAAA
192 A-TTACC--GCA--GA---AT--GA
* * * * * * * *
19709 AAAATT--TCGAAGGAATGGATCGTCTTGAATACTTTTAAGGAACCAAAGTAATAAAGGATCTCG
1 AAAATTGCTCAAAGGAATGCATCATCTTAAATAC-TTTAAGGAACCAAAGTTATAAAAGAACTAG
* * * ** * * *
19772 TGAAAGTTTGACAAGTTCTTAAGTTCGTCCAAGAACCCA-AGAGAAATAATTCTCACG-ATAATA
65 TAAAAGCTTAACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTA-AATA
* * * * * *
19835 CGTTTTTAATTTAAAGACCAAAAATT-TTTAGAAAATGACAAACTATTTAGACCGAATGAAGCGA
129 AGTTTTTAATTCAAAGA-CAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* *
19899 TT-TCTC-G-A-G-
193 TTACCGCAGAATGA
* * * *
19908 AAAATTGCTCGAAA-GAATGCGTCATCTTGAATACTTTAA-CAAACATAAGTTATAAAAGAACTA
1 AAAATTGCTC-AAAGGAATGCATCATCTTAAATACTTTAAGGAACCA-AAGTTATAAAAGAACTA
* * * ** * *
19971 GTAAAAGTTTGATAAGTTCGGAAGTTCATCCCAA-AAAGAATAGAGAAACAATTCTCACTTAAA-
64 GTAAAAGCTTAACAAGTTCGGAAGTTCAT-CCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * * * * *
20034 AAGTGTTTAATTTAAAGACCAAAACCTGTTTACAAAAAGACAAACTATTTAGACCAAATGATTCA
128 AAGTTTTTAATTCAAAGA-CAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCG
*
20099 ATTACCCGAGCATGGGACGTTCGA
192 ATTA-CC--GCA---GA--AT-GA
* * * * * * * * *
20123 AAAATTACT-AGAAGGACTGGATCGTCTTGAATGCTTTAAGGAACTAAAGTTATAAAGGAACTCG
1 AAAATTGCTCA-AAGGAATGCATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTAG
* * * * * * *
20187 TAAAAGTTTGACCAGTTTGGAAGTTCGTCCAAGAACGAAGAGAGAAACAATTCTCACGTAGATAA
65 TAAAAGCTTAACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * *
20252 GTTTTTAATTCAAAGAC-AAACTTTTTTTTACAAAATAACAGACTATTTAGACCAAATGATGTGA
130 GTTTTTAATTCAAAGACAAAAC--TTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* *
20316 TTTCACTAGAATGGAATGTTCGA
193 -TT-AC-CGCA--GAA---T-GA
* * *
20339 AAAATTGCTCGAAGGAATTG-AT-AGTCTTGAATACTTTAAGGTACCAAAG---TAAAAG---T-
1 AAAATTGCTCAAAGGAA-TGCATCA-TCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTA
* * * * * * * *
20395 -T------TGAA-AAATTCGAAAGTTCGTCCCAGAACCAAGGGAAAAACAATTCTCACGTAAATG
64 GTAAAAGCTTAACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * * * *
20452 AGTTTTTAATTCAAAGACCAAAACATGTTTACAGAATGACAAAATATTTAGACAAAATGATTCAA
129 AGTTTTTAATTCAAAGA-CAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
*
20517 TTTCCCGAGCATGGAATGTTCGA
193 -TTACC--GCA--GAA---T-GA
* * * * * * * * *
20540 AAAATTGTTCAAAGGAATGGATCGTCTTGAATACTTTTAAGGAA-TAGAAGTAATAAAGGATCTT
1 AAAATTGCTCAAAGGAATGCATCATCTTAAATAC-TTTAAGGAACCA-AAGTTATAAAAGAACTA
*** ** *
20604 GTAAAAG-TTAGACAAGTTCTTCAGTTTGTCCAAGAACCTA-AGAGAAACAATTCTCACGTAAAT
64 GTAAAAGCTTA-ACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * * * *
20667 ATGTTTTTAATTCAAAGACTAAACCTTTTTTAGAAAATGATAAACTATTTAGACCAAATGATTCG
128 AAGTTTTTAATTCAAAGAC-AAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCG
* * *
20732 ATTTCTTGTGCATGGAATGTTTGG
192 ATTAC---CGCA--GAA----TGA
* * * * * * * ** *
20756 AAAATTGCTCGAAGGAATGGATCGTGTTGAATACATTAAGGAACCGAAGTTATAACGGAACTCGT
1 AAAATTGCTCAAAGGAATGCATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTAGT
* * *
20821 AAAAGTTTAACAAGCTT-AGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT-A
66 AAAAGCTTAACAAG-TTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * * * * *
20884 --TGTT-ATTCAAATACCAAAAGTTGA-TAACAAAATGAAAAACTATTTAGACCAAATTATGTGA
130 GTTTTTAATTCAAAGA-CAAAACTT-ATTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
*
20945 TTTCTCGAGCATGGAATGTTTA
193 TTAC-C--GCA--GAATG---A
* * ** * * ** *
20967 GAAAATTGCTCGAGGGAATTG-ATTGTCTTCAATATTTTAAGGAACTGAAGTTATAAAAGAACTC
1 -AAAATTGCTCAAAGGAA-TGCATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTA
* * * * * *
21031 GTAAAAGTTTGACAAGTTCGGAAGTTCGTCTC-AGAACCAATAAAGAAACAATTCTCATGTAAAT
64 GTAAAAGCTTAACAAGTTCGGAAGTTCATC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * *
21095 AAGTTTTTAATTC-AAGATCAAGAGTTGA-TAACAAAATGACAAACTATTTAGACAAAACT-ATG
128 AAGTTTTTAATTCAAAGA-CAAAACTT-ATTTACAAAATGACAAACTATTTAGACCAAA-TGATG
** *
21157 TTATTTCTCTAGCATGTTCAA--A
190 CGATTAC-C--GCA-G---AATGA
** * * * * * * * *
21179 AAAATTGCTTGAAGGAATGGATCGTCTTGAATTCTTTAAGGAACCGAAGCTATAAAACAACTCGT
1 AAAATTGCTCAAAGGAATGCATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTAGT
* * * * * *
21244 AAAAGTTTGACAAGTTCGAAAGTTCGTCCAACAACCAAGAGTGAAACAATTCTCACGTAAATAAG
66 AAAAGCTTAACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
*
21309 TTTTTAATTCAAAGACACAAACTTTTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
131 TTTTTAATTCAAAGACA-AAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGA-T
* *
21374 TCACAAGAATGGAATGTTCGA
194 T-AC-CGCA--GAA---T-GA
* ** * *
21395 AAAATTGCTCGAAGGAATTG-ATTGTCTTTAATAGTTTAAGGTAA-CAAAG---T---A-AA--A
1 AAAATTGCTCAAAGGAA-TGCATCATCTTAAATACTTTAAGG-AACCAAAGTTATAAAAGAACTA
* *
21449 GT------TTGACAAGTTCGGAAGTTCGTCGC-AGAACCAAGAGAGAAACAATTCTCACGTAAAT
64 GTAAAAGCTTAACAAGTTCGGAAGTTCATC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * * * * * * *
21507 GAGTTTTTAATTCAAGGAGTAAAACATCTTTATAAAATGACAAACTATTTAGACAAAATGATTCA
128 AAGTTTTTAATTCAAAGA-CAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCG
* *
21572 ATTTCCCGAGCATGGAGTGTTCA
192 A-TTACC--GCA--GAATG---A
* * * * * * * * * *
21595 AAAATT-TTCGAAGGAATGGATCGTCTTGAATACTTTTAAGGAACCAAAGTAAGAAAGGATCTCG
1 AAAATTGCTCAAAGGAATGCATCATCTTAAATAC-TTTAAGGAACCAAAGTTATAAAAGAACTAG
* * * ** * * *
21659 TGAAAGTTTGACAAGTTCTTAAGTTCATCCAAGAACCCA-AGAGAAACAATTCTTACGT-AATAT
65 TAAAAGCTTAACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * * * **
21722 GTTTTTAATTTAAAGACCAAAACTTGTTTATAAAATGAGAAACTATTTAGACCAAATGAAGTAAT
130 GTTTTTAATTCAAAGA-CAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
*
21787 TTCC-C-G-A-G-
194 TACCGCAGAATGA
* * * *
21795 AAAATTTCTCGAAGGAATGCATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGT
1 AAAATTGCTCAAAGGAATGCATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTAGT
* * * * * ** * * *
21860 AAAGGTTTGACAAGTTTGAAAGTTTGTCCCATAACCAACAGAGAAACAATTCTCACGTAAA-AAG
66 AAAAGCTTAACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * *
21924 TTTTTAATTTAAAGACCAAAACCTGTTTACAAAAT-ACAAACTATTTAGACCAAATGATTCGATT
131 TTTTTAATTCAAAGA-CAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
*
21988 ACCCGAGTATGGAATGTTCGA
195 A-CC--GCA--GAA---T-GA
* * * * * *
22009 AAAATTGCTCGAAA-GAATGGATCGTCTTGAATATTTTAAGGAACCAAAGTTATAAAGGAACTCG
1 AAAATTGCTC-AAAGGAATGCATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTAG
* * * *
22073 TAAGAGTTTGACAAGTT-GGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
65 TAAAAGCTTAACAAGTTCGG-AAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* ** * * * *
22137 AGTTTTTAATCCAAAGACACAATTTTTTTTTTATAAAATGACAAACTATTTAGACGAAATGATGT
129 AGTTTTTAATTCAAAGACA-AA--ACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGC
** *
22202 GATTTCAAGAGAATTGAATGTTCGA
191 GA-TT--ACCGCA--GAA---T-GA
* * * *
22227 AAAATTGCTCGAAGGAATTG-ATCGTCTTGAATACTTTAAGGTACCAAAG---T---A-AA--AG
1 AAAATTGCTCAAAGGAA-TGCATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTAG
* * * * * *
22282 T------TTGACAAGTTCGGAAGTTCATCCCAGAACTAGGAAAGAAACAATTCTCACGTAAATTA
65 TAAAAGCTTAACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * * * * * *
22341 GTTTTT-ATTCAAAGACCAAAACATGTTTACAGAATGACAAAATTTTTAGACAAAATGATTCAAT
130 GTTTTTAATTCAAAGA-CAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGA-
*
22405 TTCCCTAGCATGGAATGTTCAA
193 TTACC--GCA--GAATG----A
* * * ** * * * *
22427 AAAATTGTTTAAAGGAATGGATTGTCTTGAATACTTTTATA-GAACCAAAGTAAT-AAAGGATTG
1 AAAATTGCTCAAAGGAATGCATCATCTTAAATAC-TTTA-AGGAACCAAAGTTATAAAAGAACT-
* * * *** *
22490 TGTAAAAGTTTGACAAGTTCTTCAGTTCGTCCAAGAACC-A-AGAGAAACAATTCTCACGTAAAT
63 AGTAAAAGCTTAACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * * * *
22553 ACGTTTTTAATTCAAAGACCAAAACTTGTTTAGAATATGACAAACTATCTA-ACCAAATGATGTG
128 AAGTTTTTAATTCAAAGA-CAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCG
*
22617 ATTTCC-C-G-A-G-
192 ATTACCGCAGAATGA
* * * * * * * * *
22627 AAAACTGCGT-GAAGGAATGGATCGTCTTGAATAATTTATGGAACCAATGTTATAAAAGAACTCG
1 AAAATTGC-TCAAAGGAATGCATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTAG
* * * * ** * *
22691 TAAAAGTTTAACAAGTTCGGATGTTCGTCCATGAACCTTGAGAGAAATAATTCTCATGTAAATAA
65 TAAAAGCTTAACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * *
22756 GTTTTTAAATT-AAAGACCAAAAGTTGA-TAACAAAATGACAAACTATTTAGACTAAACT-ATGC
130 GTTTTT-AATTCAAAGA-CAAAACTT-ATTTACAAAATGACAAACTATTTAGACCAAA-TGATGC
* * *
22818 GATTTTTCGAGCATGGAATGTTCGG
191 GA--TTAC-CGCA--GAA---T-GA
** * * * * * * *
22843 AAAATTGCTTGAAGGAATGGATCATCTTGAATTCTTTAAGGAATCATAGTTATAAAAGAAGTCGT
1 AAAATTGCTCAAAGGAATGCATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTAGT
* * * ** * *
22908 AAAAGTTTGACAAGTTCAGAAGTTTGTCCAAGAACCTAGAGAAAAACAATTCTCACGTAAATAAG
66 AAAAGCTTAACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * *
22973 TTTTTAATTC-AAGATCAAAAGTTGA-TAACAAAAAT-AAAAAGTATTTAGACAAAACT-ATGCG
131 TTTTTAATTCAAAGA-CAAAACTT-ATTTAC-AAAATGACAAACTATTTAGACCAAA-TGATGCG
*
23034 ATTTCCTGAGCATGGAATGTTCAA
192 ATTACC---GCA--GAATG----A
* * * * * *
23058 AAAATTGCTCGAAGGAATGGATCGTCTTGAATTCTTTAAGGAACCAAAGTTATAAAAGAACTCGT
1 AAAATTGCTCAAAGGAATGCATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTAGT
* * ** * *
23123 -AAAGATTTGACAAGTTCGGAAGTTTGTCTC-AGAACCAACAGAGAAACAATTCTCATGTAAATA
66 AAAAG-CTTAACAAGTTCGGAAGTTCATC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * *
23186 AGTTTTTAATTCAAACACAAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATAATGTGA
129 AGTTTTTAATTCAAAGAC-AAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* *
23251 TTTCTTGTACATGAAAAGTTCGA
193 TTAC-CG--CA-G--AA--T-GA
* ** * * * * * * ** *
23274 AAATTTGCTTGAAGGAATGAATCGTCTTGAATACATTAATGAACCGAAGTTATAACGGAACTCGT
1 AAAATTGCTCAAAGGAATGCATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTAGT
* * * * * **
23339 AAAAGTTTGACAAGTTCGAAAGTTCATCCAAAAACCAAGAGAGAAACAATTCTAACACAAATAAG
66 AAAAGCTTAACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * * * *
23404 TTTTTAATTCTAAGACAAAAGTTAATAACAAAATGAAAAATTATTTAGACCAAA-GATGCTATTT
131 TTTTTAATTCAAAGACAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGA-TT
* *
23468 CCCGAGCATGGAATATTAA
195 ACC--GCA--G-A-A-TGA
* * ** * * *
23487 GAAAATTGCTCGAAGGAATGGATTGTCTTCAATATTTTAAGGAACCAAAGTTATAAAAGAACTCG
1 -AAAATTGCTCAAAGGAATGCATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTAG
* * * * ** * *
23552 TAAAAGTTTGACAAGTTTGGAAGTTCGTCTC-AGAACC--TTGAGAAACAATTCTCACATAAGTA
65 TAAAAGCTTAACAAGTTCGGAAGTTCATC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
** * * *
23614 AAATTTTAATTCAAAGACAAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATACGA
129 AGTTTTTAATTCAAAGAC-AAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* *
23679 TTTCTTGTGCATGGAATGTTCAA
193 TTAC---CGCA--GAATG----A
* * ** * * ** *
23702 AAAATTGCTCGAAGGAATGGATTGTCTTGAATACATTAAGGAACCAAAGTTATAACGGAACTCGT
1 AAAATTGCTCAAAGGAATGCATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTAGT
* * * * *
23767 AAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGCAAATAAG
66 AAAAGCTTAACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * * * *
23832 CTTTTAATTAAAAGTCCAAAAGTTGA-TAACAAAATGAAAAACTATTTGGACCAAATGATGCGAT
131 TTTTTAATTCAAAG-ACAAAACTT-ATTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
*
23896 TTCCAGAGCATGGAATGTTCA
194 TACC---GCA--GAATG---A
* * * * * * ** * *
23917 GAAAATTGCTCGAAGGAAGGGATCGTCTTCAATATTTTAAGGAACTGAAGTTATAAAAGATCTCG
1 -AAAATTGCTCAAAGGAATGCATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTAG
* * ** * * * * *
23982 TAAAAGTTTGACAAGTTTAGAAGTTCGTCTCAA-AACCAATAGAGAAACAATTCTTATGTAAACA
65 TAAAAGCTTAACAAGTTCGGAAGTTCATC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * *
24046 AGTTTTTAATTCAAAGACAAAAAATTGTTTACAAAATGACAAACTATTTAGACTAAATGATGTGA
129 AGTTTTTAATTCAAAGAC-AAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* * *
24111 TTTCTTGTGCATGAAATATTCAA
193 TTAC---CGCA-G--A-A-T-GA
* * * * * * * **
24134 AAAATTGCTCAAAGGAATGGATCGTCTTCAATACATTAAGGAATCAATGTTAT-AACGAAACCCG
1 AAAATTGCTCAAAGGAATGCATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAG-AACTAG
* * * *
24198 TAAAAGTTTGACAAGTT-GAGAAGTTCGTCCAAGAACCTAGAGAGAAACAATTCTCACGTAAATA
65 TAAAAGCTTAACAAGTTCG-GAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * * *
24262 AGTTTTTAATTC-AAGATCAAAAGTTGA-TAACAAAAAGAAAAAGTATTTAGACAAAACT-ATGC
129 AGTTTTTAATTCAAAGA-CAAAACTT-ATTTACAAAATGACAAACTATTTAGACCAAA-TGATGC
*
24324 GATTTCCCGAGCATGGAATGTTCAA
191 GA-TTACC--GCA--GAATG----A
* * ** * *
24349 AAAATTGCTCGAAGGAATGGATTGTCTTGAATTCTTTAAGGAACCAAAGTTATAAAAGAACTCA-
1 AAAATTGCTCAAAGGAATGCATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACT-AG
* * ** * * * * *
24413 AAAAAGTTTGAA-AAGTTCAAAAGTTCGTCTTAA-AACCAATAGAGAAATAATTTTCACGTAAAT
65 TAAAAGCTT-AACAAGTTCGGAAGTTCATC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * *
24476 AAGTTTTTAATTCAAAGACAAAAAATTTGTTTACAAAATTGACAAACTATTTAGACCAAATGATT
128 AAGTTTTTAATTCAAAGAC--AAAACTTATTTACAAAA-TGACAAACTATTTAGACCAAATGATG
* * *
24541 CGATTTCTTGTACATGGAGTGTTCAA
190 CGATTAC-CG--CA--GAATG----A
* * * * * *
24567 AAAATTGCTCAAAGGAATAG-ATCGTCTTGAATACATTAAGGAACCGAAGTTAT-AACGAAACTC
1 AAAATTGCTCAAAGGAAT-GCATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAG-AACTA
* * ** ** * * * * *
24630 GTAAAAGTTTGAGTAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCATGAAAATT
64 GTAAAAGCTTAACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* *
24695 AGTTTTTAATTCAAAGACACAAACTTTTTTACAAAATGACAAACTATTTAGACCAAATGTTGCGA
129 AGTTTTTAATTCAAAGACA-AAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
*
24760 TTTCCTGAGCATGAAATGTTCGA
193 TTACC---GCA-G-AA---T-GA
* * * *
24783 AAAATTGCTCGAAGGAATGAATCGTCTTGAATACTTTAAGGTAA-CAAAG---T---A-AA--AG
1 AAAATTGCTCAAAGGAATGCATCATCTTAAATACTTTAAGG-AACCAAAGTTATAAAAGAACTAG
* * ** *
24838 T------TTGACAAGTTCGAAAGTTTGTCCCAA-AACCAAGAGAGAAACAATTCTCACGTAAATG
65 TAAAAGCTTAACAAGTTCGGAAGTTCAT-CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * ***
24896 AGTTTTTAATTCAAAGAGTAAAA-TATTTTTACAAAATGACAAACTATTTAGACAAAATGATTAA
129 AGTTTTTAATTCAAAGA-CAAAACT-TATTTACAAAATGACAAACTATTTAGACCAAATGATGCG
* *
24960 ATTTCCCTAACATGGAATGTTCAGA
192 A-TTACC--GCA--GAA---T--GA
* ** * * * * * * * *
24985 AAAATT-TTCGGAGGAATGGATCGTCTTTAATGCTTTAAGGAACCAAAGTAATAAAGGATCTCGT
1 AAAATTGCTCAAAGGAATGCATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTAGT
* * * ** * * * * *
25049 GAAAGTTTGACAAGTTCTTAAGTTCATCCAAGAACCCA-AGAGAAAGAATTCTAAGGTAAATATG
66 AAAAGCTTAACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * *
25113 TTTTTAATTCAAAGAC-CAA-TTGGTTTAGAAAATGGCAAACTATTTAGACCAAATGAAGCGATT
131 TTTTTAATTCAAAGACAAAACTT-ATTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
* *
25176 -TC-CTG-A-G-
195 ACCGCAGAATGA
* * * ** *
25183 AAAATTGCACAAAGGAATGCAACGTCTTGGATACTTTAAGAAACCAAAGTTATAAAAGAACTAGT
1 AAAATTGCTCAAAGGAATGCATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTAGT
* * * *
25248 AAAAGTTTGACAAGTTCGGAAGTTCGTCCCAA-AACCAATAGAGAAACAATTCTCACGTAAA-AA
66 AAAAGCTTAACAAGTTCGGAAGTTCAT-CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * * * * * *
25311 GTTTTTAATTTAAAGACCAAACCCTGTTTACATAATGACAAACTATTTGGATCAAATGATTCGAT
130 GTTTTTAATTCAAAGA-CAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGAT
25376 TACCCGAGCATGGAATGTTCA
194 TA-CC--GCA--GAATG---A
* * * * * * *
25397 GAAAATTGCTCGAAA-GAATGGATCGTCTTGAATACTTCAAGGAACCGAAGTTATAAAGGAACTC
1 -AAAATTGCTC-AAAGGAATGCATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTA
* * * * * * *
25461 GTAAAAGTTTGACAGGTTTGGAAGCTCATCCAAGAACCCA-AGAGAAACAATTTTCACGTAAATA
64 GTAAAAGCTTAACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * * *
25525 CGTTTTAAATGCAAAGACCAAAACTTGTTTAGAAAATGACAAACTATTTAGACCAAATGATGTGA
129 AGTTTTTAATTCAAAGA-CAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* * *
25590 TTTCTTGTGCATGGAATGTTTGG
193 TTAC---CGCA--GAA----TGA
* * ** * * * * *
25613 AAAATTGCTTGAAA-GAATGGATTTTCTTGAATACATTAAGGAACCGAAGTTATAATAGAACTCG
1 AAAATTGC-TCAAAGGAATGCATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTAG
* ** * *
25677 TAAAAGTTTGCCAAGTTCAGAAG-T--T-C--G-TCC---A-AG----AATTCTCACGTAAATAA
65 TAAAAGCTTAACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * *
25727 G---TT-ATTCAAAGACCAAAAGTTGA-TAACAAAATGAAAAACTATTTAGACCAAATGATGCAA
130 GTTTTTAATTCAAAGA-CAAAACTT-ATTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* *
25787 TTTTTCGAGCATGGAATGTTA
193 --TTAC-CGCA--GAATG--A
** * * * * * * *
25808 GGAAAATTGCTTGAAGAAATGGATCGTTTTCAATATTTTAAGGAACCAAAGTTATAAAAAAAACT
1 --AAAATTGCTCAAAGGAATGCATCATCTTAAATACTTTAAGGAACCAAAGTTAT-AAAAGAACT
* * * * * * *
25873 CGTAAAAAG-TTCGACAAGTTCGGAAGTTCGTCTCGA-AACCAATAAAGAAACAATTCTCATGTA
63 AGT-AAAAGCTT-AACAAGTTCGGAAGTTCATC-CAAGAACCAAGAGAGAAACAATTCTCACGTA
* ** * * * *
25936 AATAAGTTTTTAATTC-AAGATCAAAAGTTGGTAACAAAATGACAAGCTTTTTAGACAAAACT-A
125 AATAAGTTTTTAATTCAAAGA-CAAAACTTATTTACAAAATGACAAACTATTTAGACCAAA-TGA
*
25999 TGTGATTTACCGAGCATGGAATGTTCGA
188 TGCGA-TTACC--GCA--GAA---T-GA
* * * * * * ** *
26027 AAAATTGCTCGAAGGAATGGATCCTTTTGAATTCTTTAA-GAGACCGGAGTTATAAAAGAATTCA
1 AAAATTGCTCAAAGGAATGCATCATCTTAAATACTTTAAGGA-ACCAAAGTTATAAAAGAACT-A
* * * * * * * *
26091 -TAAAGGTTTGACAAGTTCGGAAGTTCGTCTAAGAACCAAGGGTGAAACAATACTCACGTAAATA
64 GTAAAAGCTTAACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* *
26155 AGTTTTTAATTCAAAGATACAAACTTTTTTTACAAAATGACAAACTATTTAGACCAAATGATGCG
129 AGTTTTTAATTCAAAGACA-AAAC-TTATTTACAAAATGACAAACTATTTAGACCAAATGATGCG
26220 ATT
192 ATT
26223 TCACGATAAT
Statistics
Matches: 6521, Mismatches: 1106, Indels: 1116
0.75 0.13 0.13
Matches are distributed among these distances:
193 2 0.00
196 4 0.00
197 158 0.02
198 47 0.01
199 322 0.05
200 474 0.07
201 733 0.11
202 71 0.01
203 71 0.01
204 14 0.00
205 13 0.00
206 12 0.00
207 17 0.00
208 14 0.00
209 23 0.00
210 19 0.00
211 141 0.02
212 414 0.06
213 177 0.03
214 637 0.10
215 1349 0.21
216 1330 0.20
217 224 0.03
218 239 0.04
219 11 0.00
220 3 0.00
221 2 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.29
Consensus pattern (206 bp):
AAAATTGCTCAAAGGAATGCATCATCTTAAATACTTTAAGGAACCAAAGTTATAAAAGAACTAGT
AAAAGCTTAACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
TTTTTAATTCAAAGACAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTA
CCGCAGAATGA
Found at i:19534 original size:829 final size:833
Alignment explanation
Indices: 17885--26586 Score: 7016
Period size: 829 Copynumber: 10.4 Consensus size: 833
17875 ACAAGAACTT
* * * *
17885 GTAAAAGTTTGACAAGTTCAAAAGTTCATCTC-AGAACCAATAGAGAAACAATTCTCATGTAAAT
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * *
17949 AAGTTTTTAATTCAAAGACCAAAACTTGTTTAGAAAATGACAAACTATTTAGACCAAATGATGCA
65 AAGTTTTTAATTCAAAGA-CAAAACTTGTTTACAAAATGACAAACTATTTAGACAAAATGATTC-
* * * * * * *
18014 ATTTCTTGTGCATGGAATGTCCGAAAAATTGCTCGAAGGAATGGATCATCCTGAATAC-ATTAAG
128 ATTTCTCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTTAAG
* * * * * *
18078 GAA-TAGAAGTTATAACAGAACTCGTAAAAGTTTGCCAAGTTCAGAAGTTAGTCCAAGAACCAAG
193 GAACCA-AAGTAATAA-AGATCTCGT-AAAGTTTGACAAGTTCTGAAGTTCGTCCAAGAACCAAG
* * * * *
18142 AGAGAAACAATTCTCACGTAAATAAG---AT-ATTCAAAGACCAAAATTTGATAACAAAATGA-A
255 AGAGAAACAATTCTCACGTAAAT-AGTTTTTAATTCAAAGAACAAAACTTGTTTACAAAATGACA
*
18202 TAACTATTTAGACCAAATGATGCGATTTTTCGAGCATAGAATGTTCGAAAAATTGCTCAAAGGAA
319 -AACTATTTAGACCAAATGATGCGA--TTTC---CA-CGAA---T-G-AAAATTGCTCAAAGGAA
* * * * * *
18267 TGGATCGTCTTCAATATTTTAAGGAACCAAAGTTATAAAAAAACTCATAAAAGTTTGAAAAGTTT
372 TGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC
** * * * * *
18332 AAAAGTTCGTCTCAA-AACTAATAGGGAAACAATTCTCATGTAAATAAGTTTTTAATTC-AAGAT
437 GGAAGTTCATC-CAAGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * * *
18395 CAAAAGTTGA-TAACAAAATGACAAACTATTTAGAACAAACT-ATGCGATTTCTCGAGCATAGAA
501 CAAAAGTT-ATTAACAAAATGACAAACTATTTAGACCAAA-TGATTCGATTTCCCGAGCATGGAA
* * * * * *
18458 TGTTCAAAAAATTGCTCAAAGGAATGGATCATCTTGAATTCTTTAAGGAATCGAAGTTATAAACG
564 TGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAG
* * * *
18523 AACTCGTAAAGGTTTGACAAGTTTGGAAGTTCGTCTAAGAACCAAGAGTGAAACAATTCTCACGT
629 AACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
*
18588 AAATAAGTTTTTAATTCAAAGACAAACTTTTTTATAAAATGACAAACTATTTAGACCAAATGATG
694 AAATAAGTTTTTAATTCAAAGACAAACTTTTTTACAAAATGACAAACTATTTAGACCAAATGATG
* * * * * ** *
18653 CGATTTCACGAGAATGAAATGTTTGAAAATTTGCTCGAATGAATTAATCGTCTTGAATAGTTTAA
759 CGATTTCACGATAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAA
18718 GGTACCAAA-
824 GGTACCAAAC
* ** * *
18727 GTAAAAGTTTGACAAGTTGGAAAGTTCGTCGTAGAACC-A-AGAGAAACAATTCTCATGTAAATG
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * *
18790 AGTTTTTAATTCAAAGAGTAAAACATCTTTACAAAATGACAAATTATTTAGACAAAATGATTCAT
66 AGTTTTTAATTCAAAGA-CAAAACTTGTTTACAAAATGACAAACTATTTAGACAAAATGATTCA-
* * *
18855 TTTCTCGAGCATGGAGTGTTCAAAAAAATT-TTCAAAGGAATGGATCGTCTTGAATACTTTTAAG
129 TTTCTCGAGCATGGAATGTTC-AAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTTAAG
* * * * * * *
18919 GAACAAAAATAATAAAGGATCTTGTGTAAGTTTGACAAGTTCTTAAGTTTGTCCAAGAACCCA-A
193 GAACCAAAGTAATAAA-GATCTCGT-AAAGTTTGACAAGTTCTGAAGTTCGTCCAAGAACCAAGA
** *
18983 GAGAAACAATTCTCACGTAAATACGTTTTTAATTCAAAGAACAAAACTTGTTTGGAAAATGAGAA
256 GAGAAACAATTCTCACGTAAATA-GTTTTTAATTCAAAGAACAAAACTTGTTTACAAAATGACAA
** * * * *
19048 ACCGTTTAGACCAAATGAAGCGA-TTCC-CG-A-GAAAATTGCTCAAAGGAATGCATCATCTTAA
320 ACTATTTAGACCAAATGATGCGATTTCCACGAATGAAAATTGCTCAAAGGAATGGATCGTCTTGA
* * * * *
19109 ATACTTTAAGGAA-TAGAAGTTATAAAAGAACTAGTAAAAGCTTAATAAGTTCGGAAGTTCATCC
385 ATACTTTAAGGAACCA-AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCAT-C
* * * * ** *
19173 CAA-AACCAATAGAGAATCAATTCTCACGTAAA-AAGTATTTAATTTAAATACCAAAACCTATTT
448 CAAGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTATTA
*
19236 ACAAAATGACAAACTATTTAGACCAAATGATTCGATTACCCGAGCATGGAATGTTCAAAAAATTG
513 ACAAAATGACAAACTATTTAGACCAAATGATTCGATTTCCCGAGCATGGAATGTTCAAAAAATTG
* *
19301 CTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAGGAACTCGTAAAAGTT
578 CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTT
* * *
19366 TGACCAGTTCGGTAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
643 TGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
*
19431 TTCAAAGACAAACTTTTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCAAGATAA
708 TTCAAAGACAAACTTTTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCACGATAA
* * * *
19496 TAGAATGTTCGAAAAATTGCTCGAAGGAATTGATCGTCTTGAATAGTTTAAGGTACTAAA-
773 TGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGTACCAAAC
* * * * * *
19556 GTAAAAGTTTGATAAATTCGAAAGTTCATCCTAGAA-TAA-AGAGAAACAATTCTCACATAAATG
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT-
* * *** * * *
19619 AGGCTTTTAATTCAAAGAGTGTAACATCTTTACAAAATGACAAACTATTTAGACAAAGTGATTCA
65 AAGTTTTTAATTCAAAGA-CAAAACTTGTTTACAAAATGACAAACTATTTAGACAAAATGATTC-
* * *
19684 ATTTCCCGAGCATGGAGTTTTCAAAAAAATT--TCGAAGGAATGGATCGTCTTGAATACTTTTAA
128 ATTTCTCGAGCATGGAATGTTC-AAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTTAA
* *
19747 GGAACCAAAGTAATAAAGGATCTCGTGAAAGTTTGACAAGTTCTTAAGTTCGTCCAAGAACCCA-
192 GGAACCAAAGTAATAAA-GATCTCGT-AAAGTTTGACAAGTTCTGAAGTTCGTCCAAGAACCAAG
* * * * *
19811 AGAGAAATAATTCTCACG-ATAATACGTTTTTAATTTAAAGACCAAAAATT-TTTAGAAAATGAC
255 AGAGAAACAATTCTCACGTA-AATA-GTTTTTAATTCAAAGAACAAAACTTGTTTACAAAATGAC
* * * *
19874 AAACTATTTAGACCGAATGAAGCGATTT-CTCG-A-GAAAATTGCTCGAAA-GAATGCG-TCATC
318 AAACTATTTAGACCAAATGATGCGATTTCCACGAATGAAAATTGCTC-AAAGGAATG-GATCGTC
* * * *
19934 TTGAATACTTTAA-CAAACATAAGTTATAAAAGAACTAGTAAAAGTTTGATAAGTTCGGAAGTTC
381 TTGAATACTTTAAGGAACCA-AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTC
** * * * **
19998 ATCCCAA-AAAGAATAGAGAAACAATTCTCACTTAAA-AAGTGTTTAATTTAAAGACCAAAACCT
445 AT-CCAAGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT
* * * * * * * *
20061 GTTTACAAAAAGACAAACTATTTAGACCAAATGATTCAATTACCCGAGCATGGGACGTTCGAAAA
509 ATTAACAAAATGACAAACTATTTAGACCAAATGATTCGATTTCCCGAGCATGGAATGTTCAAAAA
* * * * * *
20126 ATTACTAGAAGGACTGGATCGTCTTGAATGCTTTAAGGAACTAAAGTTATAAAGGAACTCGTAAA
574 ATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAA
* * * *
20191 AGTTTGACCAGTTTGGAAGTTCGTCCAAGAACGAAGAGAGAAACAATTCTCACGTAGATAAGTTT
639 AGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * *
20256 TTAATTCAAAGACAAACTTTTTTTTACAAAATAACAGACTATTTAGACCAAATGATGTGATTTCA
704 TTAATTCAAAGACAAAC--TTTTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCA
* * * *
20321 CTAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATTGATAGTCTTGAATACTTTAAGGTACCAA
767 CGATAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGTACCAA
20386 A-
832 AC
* * * * * *
20387 GTAAAAGTTTGAAAAATTCGAAAGTTCGTCCCAGAACCAAGGGAAAAACAATTCTCACGTAAATG
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * *
20452 AGTTTTTAATTCAAAGACCAAAACATGTTTACAGAATGACAAAATATTTAGACAAAATGATTCAA
66 AGTTTTTAATTCAAAGA-CAAAACTTGTTTACAAAATGACAAACTATTTAGACAAAATGATTC-A
* * * *
20517 TTTCCCGAGCATGGAATGTTCGAAAAATTGTTCAAAGGAATGGATCGTCTTGAATACTTTTAAGG
129 TTTCTCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTTAAGG
* * * ** * *
20582 AA-TAGAAGTAATAAAGGATCTTGTAAAAGTTAGACAAGTTCTTCAGTTTGTCCAAGAACCTA-A
194 AACCA-AAGTAATAAA-GATCTCGT-AAAGTTTGACAAGTTCTGAAGTTCGTCCAAGAACCAAGA
* * * *
20645 GAGAAACAATTCTCACGTAAATATGTTTTTAATTCAAAG-ACTAAACCTTTTTTAGAAAATGATA
256 GAGAAACAATTCTCACGTAAATA-GTTTTTAATTCAAAGAAC-AAAACTTGTTTACAAAATGACA
* * *
20709 AACTATTTAGACCAAATGATTCGATTTCTTGTGCATGGAATGTTTGGAAAATTGCTCGAAGGAAT
319 AACTATTTAGACCAAATGATGCGATTTC-----CA-CGAA----T-GAAAATTGCTCAAAGGAAT
* * * ** *
20774 GGATCGTGTTGAATACATTAAGGAACCGAAGTTATAACGGAACTCGTAAAAGTTTAACAAGCTT-
373 GGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG-TTC
* * * * *
20838 AGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT-A--TGTT-ATTCAAATACC
437 GGAAGTTCATCCAAGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* * *
20899 AAAAGTTGA-TAACAAAATGAAAAACTATTTAGACCAAATTATGT-GATTTCTCGAGCATGGAAT
502 AAAAGTT-ATTAACAAAATGACAAACTATTTAGACCAAATGAT-TCGATTTCCCGAGCATGGAAT
* * * * * * * **
20962 GTTTAGAAAATTGCTCGAGGGAATTGATTGTCTTCAATATTTTAAGGAACTGAAGTTATAAAAGA
565 GTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGA
* * *
21027 ACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCTC-AGAACCAATAAAGAAACAATTCTCATGT
630 ACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGT
* ** * *
21091 AAATAAGTTTTTAATTC-AAGATCAAGAGTTGATAACAAAATGACAAACTATTTAGACAAAACT-
694 AAATAAGTTTTTAATTCAAAGA-CAA-ACTTTTTTACAAAATGACAAACTATTTAGACCAAA-TG
** * * * * *
21154 ATGTTATTTCTC--T-A--GCATGTTCAAAAAAATTGCTTGAAGGAATGGATCGTCTTGAATTCT
756 ATGCGATTTCACGATAATGGAATGTTC-GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
*
21214 TTAAGGAACCGAAGCTATAAAACAACTC
820 TTAAGGTA-C----C------A-AA--C
* *
21242 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAACAACCAAGAGTGAAACAATTCTCACGTAAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * *
21307 AGTTTTTAATTCAAAGACACAAACTTTTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
66 AGTTTTTAATTCAAAGACA-AAACTTGTTTACAAAATGACAAACTATTTAGACAAAATGATTC-A
* * * * * * * *
21372 TTTCACAAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATTGATTGTCTTTAATA-GTTTAAGG
129 TTTCTCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTTAAGG
*
21436 TAA-CAAAG---T----A------AAAGTTTGACAAGTTCGGAAGTTCGTCGC-AGAACCAAGAG
194 -AACCAAAGTAATAAAGATCTCGTAAAGTTTGACAAGTTCTGAAGTTCGTC-CAAGAACCAAGAG
* ** * * *
21486 AGAAACAATTCTCACGTAAATGAGTTTTTAATTCAAGGAGTAAAACATCTTTATAAAATGACAAA
257 AGAAACAATTCTCACGTAAAT-AGTTTTTAATTCAAAGAACAAAACTTGTTTACAAAATGACAAA
* * * * * *
21551 CTATTTAGACAAAATGATTCAATTTCCCGAGCATGGAGTGTTCAAAAATT-TTCGAAGGAATGGA
321 CTATTTAGACCAAATGATGCGATTT-CC-A-C---GAATG----AAAATTGCTCAAAGGAATGGA
* * * * * **
21615 TCGTCTTGAATACTTTTAAGGAACCAAAGTAAGAAAGGATCTCGTGAAAGTTTGACAAGTTCTTA
376 TCGTCTTGAATAC-TTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGA
* * * *
21680 AGTTCATCCAAGAACCCA-AGAGAAACAATTCTTACGT-AATATGTTTTTAATTTAAAGACCAAA
440 AGTTCATCCAAGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * * * * * *
21743 ACTTGTTTATAAAATGAGAAACTATTTAGACCAAATGAAGT-AATTT-CC---C---G-A-G---
505 AGTTATTAACAAAATGACAAACTATTTAGACCAAATG-ATTCGATTTCCCGAGCATGGAATGTTC
* * * * *
21795 --AAAATTTCTCGAAGGAATGCATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTA
569 AAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC
* * * * * * *
21858 GTAAAGGTTTGACAAGTTTGAAAGTTTGTCCCATAACCAACAGAGAAACAATTCTCACGTAAA-A
634 GTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * *
21922 AGTTTTTAATTTAAAGACCAAAACCTGTTTACAAAAT-ACAAACTATTTAGACCAAATGATTCGA
699 AGTTTTTAATTCAAAGA-C-AAACTTTTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
* * * *
21986 TTACCCGAGT-ATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCGTCTTGAATATTTTAAGG
762 TTTCACGA-TAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
*
22050 AACCAAAGTTATAAAGGAACTC
826 TACC----------A--AA--C
* *
22072 GTAAGAGTTTGACAAGTTGGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* ** * * *
22137 AGTTTTTAATCCAAAGACACAATTTTTTTTTTATAAAATGACAAACTATTTAGACGAAATGATGT
66 AGTTTTTAATTCAAAGACA-AA--ACTTGTTTACAAAATGACAAACTATTTAGACAAAATGAT-T
* ** * * * *
22202 GATTTCAAGAGAATTGAATGTTCGAAAAATTGCTCGAAGGAATTGATCGTCTTGAATAC-TTTAA
127 CATTTCTCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTTAA
* * * * * * *
22266 GGTACCAAAG---T----A------AAAGTTTGACAAGTTCGGAAGTTCATCCCAGAACTAGGAA
192 GGAACCAAAGTAATAAAGATCTCGTAAAGTTTGACAAGTTCTGAAGTTCGTCCAAGAACCAAGAG
* * *
22318 AGAAACAATTCTCACGTAAATTAGTTTTT-ATTCAAAGACCAAAACATGTTTACAGAATGACAAA
257 AGAAACAATTCTCACGTAAA-TAGTTTTTAATTCAAAGAACAAAACTTGTTTACAAAATGACAAA
* * * * * * *
22382 ATTTTTAGACAAAATGATTCAATTTCCCTAGCATGGAATGTTCAAAAAATTGTTTAAAGGAATGG
321 CTATTTAGACCAAATGATGCGATTT-CC-A-C---GAATG-----AAAATTGCTCAAAGGAATGG
* * * * *
22447 ATTGTCTTGAATACTTTTATA-GAACCAAAGTAAT-AAAGGATTGTGTAAAAGTTTGACAAGTTC
375 ATCGTCTTGAATAC-TTTA-AGGAACCAAAGTTATAAAAGAACT-CGTAAAAGTTTGACAAGTTC
*** * *
22510 TTCAGTTCGTCCAAGAACC-A-AGAGAAACAATTCTCACGTAAATACGTTTTTAATTCAAAGACC
437 GGAAGTTCATCCAAGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
* * * * * *
22573 AAAACTTGTTTAGAATATGACAAACTATCTA-ACCAAATGATGT-GATTT-CC---C---G-A-G
502 AAAAGTTATTAACAAAATGACAAACTATTTAGACCAAATGAT-TCGATTTCCCGAGCATGGAATG
* * * *
22627 -----AAAACTGCGT-GAAGGAATGGATCGTCTTGAATAATTTATGGAACCAATGTTATAAAAGA
566 TTCAAAAAATTGC-TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGA
* * * ** * *
22686 ACTCGTAAAAGTTTAACAAGTTCGGATGTTCGTCCATGAACCTTGAGAGAAATAATTCTCATGTA
630 ACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
* ** * *
22751 AATAAGTTTTTAAATT-AAAGACCAAAAGTTGATAACAAAATGACAAACTATTTAGACTAAACT-
695 AATAAGTTTTT-AATTCAAAGA-C-AAACTTTTTTACAAAATGACAAACTATTTAGACCAAA-TG
** ** * * * *
22814 ATGCGATTTTTCGAGCATGGAATGTTCGGAAAATTGCTTGAAGGAATGGATCATCTTGAATTCTT
756 ATGCGATTTCACGATAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTT
**
22879 TAAGGAATCATAGTTATAAAAGAAGTC
821 TAA-G-------G---TACCA-AA--C
* * *
22906 GTAAAAGTTTGACAAGTTC-AGAAGTTTGTCCAAGAACCTAGAGAAAAACAATTCTCACGTAAAT
1 GTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * * * *
22970 AAGTTTTTAATTC-AAGATCAAAAGTTGATAACAAAAAT-AAAAAGTATTTAGACAAAACT-ATG
65 AAGTTTTTAATTCAAAGA-CAAAACTTGTTTAC-AAAATGACAAACTATTTAGACAAAA-TGATT
*
23032 CGATTTC-CTGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATTC-TTT
127 C-ATTTCTC-GAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTT
* * * *
23095 AAGGAACCAAAGTTATAAAAGAACTCGTAAAGATTTGACAAGTTCGGAAGTTTGTCTC-AGAACC
190 AAGGAACCAAAGTAAT-AAAGATCTCGTAAAG-TTTGACAAGTTCTGAAGTTCGTC-CAAGAACC
* * * *
23159 AACAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAA-CACAAAAATTTGTTTACAAAAT
252 AAGAGAGAAACAATTCTCACGTAAAT-AGTTTTTAATTCAAAGAAC-AAAACTTGTTTACAAAAT
* * * **
23223 GACAAACTATTTAGACCAAATAATGTGATTTCTTGTACATGAAAAGTTCGAAAATTTGCTTGAAG
315 GACAAACTATTTAGACCAAATGATGCGATTTC-----CACG--AA--T-GAAAA-TTGCTCAAAG
* * * * **
23288 GAATGAATCGTCTTGAATACATTAATGAACCGAAGTTATAACGGAACTCGTAAAAGTTTGACAAG
369 GAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * * * ** *
23353 TTCGAAAGTTCATCCAAAAACCAAGAGAGAAACAATTCTAACACAAATAAGTTTTTAATTCTAAG
434 TTCGGAAGTTCATCCAAGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * * * *
23418 A-CAAAAGTTAATAACAAAATGAAAAATTATTTAGACCAAA-GATGCTATTTCCCGAGCATGGAA
499 ACCAAAAGTTATTAACAAAATGACAAACTATTTAGACCAAATGATTCGATTTCCCGAGCATGGAA
* * * *
23481 TATT-AAGAAAATTGCTCGAAGGAATGGATTGTCTTCAATATTTTAAGGAACCAAAGTTATAAAA
564 TGTTCAA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAA
* **
23545 GAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCTC-AGAACC--TTGAGAAACAATTCTCAC
628 GAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC-CAAGAACCAAGAGAGAAACAATTCTCAC
* * ** *
23607 ATAAGTAAAATTTTAATTCAAAGACAAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAAT
692 GTAAATAAGTTTTTAATTCAAAGAC-AAACTTT-TTTACAAAATGACAAACTATTTAGACCAAAT
* ** * * *
23672 GATACGATTTCTTG-TGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATTGTCTTGAATAC
755 GATGCGATTTCACGAT-AATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC
* *
23736 ATTAAGGAACCAAAGTTATAACGGAACTC
819 TTTAAGGTACC---------A---AA--C
*
23765 GTAAAAGTTTGACAAGTTC-AGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGCAAAT
1 GTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * * * * * * * *
23829 AAGCTTTTAATTAAAAGTCCAAAAGTTGATAACAAAATGAAAAACTATTTGGACCAAATGATGCG
65 AAGTTTTTAATTCAAAG-ACAAAACTTGTTTACAAAATGACAAACTATTTAGACAAAATGATTC-
* * *
23894 ATTTC-CAGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAAGGGATCGTCTTCAATA-TTTTAA
128 ATTTCTC-GAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTTAA
** *
23957 GGAACTGAAGTTATAAAAGATCTCGTAAAAGTTTGACAAGTT-TAGAAGTTCGTCTCAA-AACCA
192 GGAACCAAAGTAAT-AAAGATCTCGT-AAAGTTTGACAAGTTCT-GAAGTTCGTC-CAAGAACCA
* * * * *
24020 ATAGAGAAACAATTCTTATGTAAACAAGTTTTTAATTCAAAG-ACAAAAAATTGTTTACAAAATG
253 AGAGAGAAACAATTCTCACGTAAA-TAGTTTTTAATTCAAAGAAC-AAAACTTGTTTACAAAATG
* * * *
24084 ACAAACTATTTAGACTAAATGATGTGATTTCTTGTGCATGAAATATTCAAAAAATTGCTCAAAGG
316 ACAAACTATTTAGACCAAATGATGCGATTTC-----CACG--A-A-T--GAAAATTGCTCAAAGG
* * * * * *
24149 AATGGATCGTCTTCAATACATTAAGGAATCAATGTTAT-AACGAAACCCGTAAAAGTTTGACAAG
370 AATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAG-AACTCGTAAAAGTTTGACAAG
* * *
24213 TT-GAGAAGTTCGTCCAAGAACCTAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC-AA
434 TTCG-GAAGTTCATCCAAGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
* * * * * *
24276 GATCAAAAGTTGA-TAACAAAAAGAAAAAGTATTTAGACAAAACT-ATGCGATTTCCCGAGCATG
498 GACCAAAAGTT-ATTAACAAAATGACAAACTATTTAGACCAAA-TGATTCGATTTCCCGAGCATG
* *
24339 GAATGTTCAAAAAATTGCTCGAAGGAATGGATTGTCTTGAATTCTTTAAGGAACCAAAGTTATAA
561 GAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
** * ** * * * *
24404 AAGAACTCAAAAAAGTTTGAAAAGTTCAAAAGTTCGTCTTAA-AACCAATAGAGAAATAATTTTC
626 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC-CAAGAACCAAGAGAGAAACAATTCTC
*
24468 ACGTAAATAAGTTTTTAATTCAAAGACAAAAAATTTGTTTACAAAATTGACAAACTATTTAGACC
690 ACGTAAATAAGTTTTTAATTCAAAGAC--AAACTTT-TTTACAAAA-TGACAAACTATTTAGACC
* ** * * * *
24533 AAATGATTCGATTTCTTG-TACATGGAGTGTTCAAAAAATTGCTCAAAGGAATAGATCGTCTTGA
751 AAATGATGCGATTTCACGATA-ATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGA
* *
24597 ATACATTAAGGAACCGAAGTTATAACGAAACTC
815 ATAC-TT---TAA--G--G---T-ACCAAA--C
** * * * * *
24630 GTAAAAGTTTGAGTAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCATGAAAATT
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* *
24695 AGTTTTTAATTCAAAGACACAAACTTTTTTACAAAATGACAAACTATTTAGACCAAATG-TTGCG
66 AGTTTTTAATTCAAAGACA-AAACTTGTTTACAAAATGACAAACTATTTAGACAAAATGATT-C-
* * *
24759 ATTTC-CTGAGCATGAAATGTTCGAAAAATTGCTCGAAGGAATGAATCGTCTTGAATAC-TTTAA
128 ATTTCTC-GAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTTAA
* *
24822 GGTAA-CAAAGT-A-AAAG-T-TTG-ACAAGTTCGA-AAGTT-T---G-TC--CCAA-AACCAAG
192 GG-AACCAAAGTAATAAAGATCTCGTA-AAGTTTGACAAGTTCTGAAGTTCGTCCAAGAACCAAG
** *
24872 AGAGAAACAATTCTCACGTAAATGAGTTTTTAATTCAAAGAGTAAAA-TATTTTTACAAAATGAC
255 AGAGAAACAATTCTCACGTAAAT-AGTTTTTAATTCAAAGAACAAAACT-TGTTTACAAAATGAC
* *** * **
24936 AAACTATTTAGACAAAATGATTAAATTTCCCTAACATGGAATGTTCAGAAAAATT-TTCGGAGGA
318 AAACTATTTAGACCAAATGATGCGATTT-CC--AC---GAA---T--G-AAAATTGCTCAAAGGA
* * * * * *
25000 ATGGATCGTCTTTAATGCTTTAAGGAACCAAAGTAATAAAGGATCTCGTGAAAGTTTGACAAGTT
371 ATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT
** * * * * *
25065 CTTAAGTTCATCCAAGAACCCA-AGAGAAAGAATTCTAAGGTAAATATGTTTTTAATTCAAAGAC
436 CGGAAGTTCATCCAAGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
** * * * **
25129 CAATTGGT-TT-AGAAAATGGCAAACTATTTAGACCAAATGAAGCGATTT--C---C-T-G-A-G
501 CAAAAGTTATTAACAAAATGACAAACTATTTAGACCAAATGATTCGATTTCCCGAGCATGGAATG
* * * * * *
25183 -----AAAATTGCACAAAGGAATGCAACGTCTTGGATACTTTAAGAAACCAAAGTTATAAAAGAA
566 TTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
* *
25243 CTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCCAA-AACCAATAGAGAAACAATTCTCACGTA
631 CTCGTAAAAGTTTGACAAGTTCGGAAGTTCGT-CCAAGAACCAAGAGAGAAACAATTCTCACGTA
* * * * * *
25307 AA-AAGTTTTTAATTTAAAGACCAAACCCTGTTTACATAATGACAAACTATTTGGATCAAATGAT
695 AATAAGTTTTTAATTCAAAGA-CAAA-CTTTTTTACAAAATGACAAACTATTTAGACCAAATGAT
* * * ** * *
25371 TCGATTACCCGAGCATGGAATGTTC-AGAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTC
758 GCGATTTCACGATAATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTT
*
25435 AAGGAACCGAAGTTATAAAGGAACTC
822 AAGGTACC----------A--AA--C
* * * * * * *
25461 GTAAAAGTTTGACAGGTTTGGAAGCTCATCCAAGAACCCA-AGAGAAACAATTTTCACGTAAATA
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * * *
25525 CGTTTTAAATGCAAAGACCAAAACTTGTTTAGAAAATGACAAACTATTTAGACCAAATGATGTGA
66 AGTTTTTAATTCAAAGA-CAAAACTTGTTTACAAAATGACAAACTATTTAGACAAAATGAT-TCA
* * *** * * ** *
25590 TTTCTTGTGCATGGAATGTTTGGAAAATTGCTTGAAAGAATGGATTTTCTTGAATAC-ATTAAGG
129 TTTCTCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTTAAGG
* * * * *
25654 AACCGAAGTTATAATAGAACTCGTAAAAGTTTGCCAAGTTCAGAAGTTCGT-------CC---A-
194 AACCAAAGTAATAA-AGATCTCGT-AAAGTTTGACAAGTTCTGAAGTTCGTCCAAGAACCAAGAG
* * * * *
25708 AG----AATTCTCACGTAAATAAG---TT-ATTCAAAGACCAAAAGTTGATAACAAAATGAAAAA
257 AGAAACAATTCTCACGTAAAT-AGTTTTTAATTCAAAGAACAAAACTTGTTTACAAAATGACAAA
* * ** *
25765 CTATTTAGACCAAATGATGCAATTTTTCGAGCATGGAATGTTAGGAAAATTGCTTGAAGAAATGG
321 CTATTTAGACCAAATGATGCGA--TTTC---CA-CGAA---T--GAAAATTGCTCAAAGGAATGG
* * * * *
25830 ATCGTTTTCAATATTTTAAGGAACCAAAGTTATAAAAAAAACTCGTAAAAAGTTCGACAAGTTCG
375 ATCGTCTTGAATACTTTAAGGAACCAAAGTTAT-AAAAGAACTCGT-AAAAGTTTGACAAGTTCG
* * * * *
25895 GAAGTTCGTCTCGA-AACCAATAAAGAAACAATTCTCATGTAAATAAGTTTTTAATTC-AAGATC
438 GAAGTTCATC-CAAGAACCAATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
** * * * *
25958 AAAAGTTGGTAACAAAATGACAAGCTTTTTAGACAAAACT-ATGT-GATTTACCGAGCATGGAAT
502 AAAAGTTATTAACAAAATGACAAACTATTTAGACCAAA-TGAT-TCGATTTCCCGAGCATGGAAT
* * * * **
26021 GTTCGAAAAATTGCTCGAAGGAATGGATCCTTTTGAATTCTTTAA-GAGACCGGAGTTATAAAAG
565 GTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA-ACCAAAGTTATAAAAG
* * * * * * *
26085 AATTCATAAAGGTTTGACAAGTTCGGAAGTTCGTCTAAGAACCAAGGGTGAAACAATACTCACGT
629 AACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
26150 AAATAAGTTTTTAATTCAAAGATACAAACTTTTTTTACAAAATGACAAACTATTTAGACCAAATG
694 AAATAAGTTTTTAATTCAAAG--ACAAAC-TTTTTTACAAAATGACAAACTATTTAGACCAAATG
* * *
26215 ATGCGATTTCACGATAATGGAATGTTCGAAAAATTGTTCGAAGGAATTGATCGTCTTGAATAGTT
756 ATGCGATTTCACGATAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTT
26280 TAAGGT-CCAAA-
821 TAAGGTACCAAAC
* * *
26291 GTAAAAGTTTGACAAGTTGGAAAGTTTGTCGCAA-AACCAAGAGAGAAACAATTCTCATGTAAAT
1 GTAAAAGTTTGACAAGTTCGAAAGTTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * * * * *
26355 GAGTTTTTAATTCAAAGAGTAAAACATCTTTACAAAATGACAAACTATTTAGAAAAAAAGATTAA
65 AAGTTTTTAATTCAAAGA-CAAAACTTGTTTACAAAATGACAAACTATTTAGACAAAATGATTCA
* * * * ** * * *
26420 TTTCCCGAGCATGGAGTGTTCGAAAATTTTTTTGATGGAATGGATCATCTTGAATACTTTTAAGG
129 TTTCTCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTTAAGG
* *
26485 AACCAAAGTAATAAAGGATCTCGTGAAAGTTTGACAAGTTCTTAAGTTCGTCCAAGAACCCA-AG
194 AACCAAAGTAATAAA-GATCTCGT-AAAGTTTGACAAGTTCTGAAGTTCGTCCAAGAACCAAGAG
26549 AGAAA-AATTCTCACGTAAATAGGTTTTTAATTCAAAGA
257 AGAAACAATTCTCACGTAAATA-GTTTTTAATTCAAAGA
26587 CTGATATGAG
Statistics
Matches: 6524, Mismatches: 962, Indels: 742
0.79 0.12 0.09
Matches are distributed among these distances:
819 2 0.00
823 1 0.00
825 9 0.00
826 129 0.02
827 137 0.02
828 94 0.01
829 968 0.15
830 470 0.07
831 540 0.08
832 413 0.06
833 331 0.05
834 305 0.05
835 11 0.00
836 10 0.00
837 12 0.00
838 51 0.01
839 101 0.02
840 271 0.04
841 119 0.02
842 40 0.01
843 7 0.00
844 203 0.03
845 212 0.03
846 208 0.03
847 120 0.02
848 180 0.03
849 40 0.01
850 176 0.03
851 18 0.00
852 2 0.00
853 2 0.00
854 14 0.00
855 164 0.03
857 1 0.00
858 20 0.00
859 208 0.03
860 395 0.06
861 212 0.03
862 8 0.00
863 36 0.01
864 22 0.00
865 251 0.04
866 4 0.00
868 1 0.00
869 2 0.00
871 1 0.00
873 1 0.00
877 2 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.29
Consensus pattern (833 bp):
GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
AGTTTTTAATTCAAAGACAAAACTTGTTTACAAAATGACAAACTATTTAGACAAAATGATTCATT
TCTCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTTAAGGAA
CCAAAGTAATAAAGATCTCGTAAAGTTTGACAAGTTCTGAAGTTCGTCCAAGAACCAAGAGAGAA
ACAATTCTCACGTAAATAGTTTTTAATTCAAAGAACAAAACTTGTTTACAAAATGACAAACTATT
TAGACCAAATGATGCGATTTCCACGAATGAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTT
TAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACC
AATAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTATTAACAAAATG
ACAAACTATTTAGACCAAATGATTCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGG
AATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
TCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
CAAACTTTTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCACGATAATGGAATGT
TCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGTACCAAAC
Found at i:19694 original size:414 final size:416
Alignment explanation
Indices: 18314--26587 Score: 6142
Period size: 414 Copynumber: 19.7 Consensus size: 416
18304 AAAAAACTCA
* ** * * * *
18314 TAAAAGTTTGAAAAGTTTAAAAGTTCGTCTCAA-AACTAATAGGGAAACAATTCTCATGTAAATA
1 TAAAAGTTTGACAAGTTCGAAAGTTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * * *
18378 AGTTTTTAATTC-AAGATCAAAAGTTGATAACAAAATGACAAACTATTTAGAACAAACT-ATGCG
65 AGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATTCG
* * * * *
18441 ATTTCTCGAGCATAGAATGTTCAAAAAATTGCTCAAAGGAATGGATCATCTTGAATTCTTTAAGG
129 ATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * * * * *
18506 AATCGAAGTTATAAACGAACTCGTAAAGGTTTGACAAGTTTGGAAGTTCGTCTAAGAACCAAGAG
194 AACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAG
* *
18571 TGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC-AAACTTTTTTATAAAATGACAAAC
259 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAACTTTTTTACAAAATGACAAAC
* * * * * **
18635 TATTTAGACCAAATGATGCGATTTCACGAGAATGAAATGTTTGAAAATTTGCTCGAATGAATTAA
324 TATTTAGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGA
* * *
18700 TCGTCTTGAATAGTTTAAGGTACCAAAG
389 TCGTCTTGAATACTTTAAGGAACTAAAG
* ** * *
18728 TAAAAGTTTGACAAGTTGGAAAGTTCGTCGTAGAACC-A-AGAGAAACAATTCTCATGTAAATGA
1 TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
** * * * *
18791 GTTTTTAATTCAAAGAGTAAAACATCTTTACAAAATGACAAATTATTTAGACAAAATGATTC-AT
66 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGA-
* * * *
18855 TTTCTCGAGCATGGAGTGTTCAAAAAAATT-TTCAAAGGAATGGATCGTCTTGAATACTTTTAAG
130 TTTCCCGAGCATGGAATGTTC-AAAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC-TTTAAG
* * * * * * ** ** * *
18919 GAACAAAAATAATAAAGGATCTTGTGTAAGTTTGACAAGTTCTTAAGTTTGTCCAAGAACCCA-A
193 GAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGA
* * ** *
18983 GAGAAACAATTCTCACGTAAATACGTTTTTAATTCAAAGAACAAAACTTGTTTGGAAAATGAGAA
258 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG-ACAAAACTTTTTTACAAAATGACAA
** * * * **
19048 ACCGTTTAGACCAAATGAAGCGA-TTCCCGAGAA---AATTGCTC-AAAGGAA-TGCATC-ATCT
322 ACTATTTAGACCAAATGATGCGATTTCTCGAGAATGGAA-TGTTCGAAA--AATTGC-TCGA-AG
* * *
19106 TAA---ATAC-T-TTAAGGAATAGAAGTTATAAAAGAACT--AG
382 GAATGGAT-CGTCTT---GAAT---ACTT-T-AAGGAACTAAAG
* * * * * * *
19143 TAAAAGCTTAATAAGTTCGGAAGTTCATCCCAA-AACCAATAGAGAATCAATTCTCACGTAAA-A
1 TAAAAGTTTGACAAGTTCGAAAGTTCGT-CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * *
19206 AGTATTTAATTTAAATACCAAAACCTATTTACAAAATGACAAACTATTTAGACCAAATGATTCGA
65 AGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGA
* *
19271 TTACCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGA
130 TTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* * * *
19336 ACCAAAGTTATAAAGGAACTCGTAAAAGTTTGACCAGTTCGGTAGTTTGTCCAAGAACCAAGAGA
195 ACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
19401 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC-AAACTTTTTTACAAAATGACAAACT
260 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAACTTTTTTACAAAATGACAAACT
** * * *
19465 ATTTAGACCAAATGATGCGATTTCAAGATAATAGAATGTTCGAAAAATTGCTCGAAGGAATTGAT
325 ATTTAGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
* *
19530 CGTCTTGAATAGTTTAAGGTACTAAAG
390 CGTCTTGAATACTTTAAGGAACTAAAG
* * * * * *
19557 TAAAAGTTTGATAAATTCGAAAGTTCATCCTAGAA-TAA-AGAGAAACAATTCTCACATAAATGA
1 TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT-A
* * **** * * *
19620 GGCTTTTAATTCAAAGAGTGTAACATCTTTACAAAATGACAAACTATTTAGA-CAAAGTGATTCA
65 AGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATTCG
* *
19684 ATTTCCCGAGCATGGAGTTTTCAAAAAAATT--TCGAAGGAATGGATCGTCTTGAATACTTTTAA
129 ATTTCCCGAGCATGGAATGTTC-AAAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC-TTTAA
* * * * ** *
19747 GGAACCAAAGTAATAAAGGATCTCGTGAAAGTTTGACAAGTTCTTAAGTTCGTCCAAGAACCCA-
192 GGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAG
* * * * *
19811 AGAGAAATAATTCTCACG-ATAATACGTTTTTAATTTAAAGACCAAAA-ATTTTTAGAAAATGAC
257 AGAGAAACAATTCTCACGTA-AATAAGTTTTTAATTCAAAGA-CAAAACTTTTTTACAAAATGAC
* * *
19874 AAACTATTTAGACCGAATGAAGCGATTTCTCGAGAA---AATTGCTCGAAAGAA-TGCGTC-ATC
320 AAACTATTTAGACCAAATGATGCGATTTCTCGAGAATGGAA-TGTTCGAAA-AATTGC-TCGA--
** *** *** ** * *
19934 TTGAATACTTTAAC-AAACATAAGTTATAAAAGAACT--AG
380 AGGAATGGATCGTCTTGA-AT-ACTT-T-AAGGAACTAAAG
* * * ** * *
19972 TAAAAGTTTGATAAGTTCGGAAGTTCATCCCAA-AAAGAATAGAGAAACAATTCTCACTTAAA-A
1 TAAAAGTTTGACAAGTTCGAAAGTTCGT-CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * *
20035 AGTGTTTAATTTAAAGACCAAAACCTGTTTACAAAAAGACAAACTATTTAGACCAAATGATTCAA
65 AGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGA
* * * * * * * *
20100 TTACCCGAGCATGGGACGTTCGAAAAATTACTAGAAGGACTGGATCGTCTTGAATGCTTTAAGGA
130 TTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* * * * *
20165 ACTAAAGTTATAAAGGAACTCGTAAAAGTTTGACCAGTTTGGAAGTTCGTCCAAGAACGAAGAGA
195 ACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
* * *
20230 GAAACAATTCTCACGTAGATAAGTTTTTAATTCAAAGAC-AAACTTTTTTTTACAAAATAACAGA
260 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAC--TTTTTTACAAAATGACAAA
* * * *
20294 CTATTTAGACCAAATGATGTGATTTCACTAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATTG
323 CTATTTAGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGG
* * *
20359 ATAGTCTTGAATACTTTAAGGTACCAAAG
388 ATCGTCTTGAATACTTTAAGGAACTAAAG
* * * * * *
20388 TAAAAGTTTGAAAAATTCGAAAGTTCGTCCCAGAACCAAGGGAAAAACAATTCTCACGTAAATGA
1 TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * * * *
20453 GTTTTTAATTCAAAGACCAAAACATGTTTACAGAATGACAAAATATTTAGACAAAATGATTCAAT
66 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGAT
* * *
20518 TTCCCGAGCATGGAATGTTCGAAAAATTGTTCAAAGGAATGGATCGTCTTGAATACTTTTAAGGA
131 TTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC-TTTAAGGA
* * * * * * *** * *
20583 A-TAGAAGTAATAAAGGATCTTGTAAAAGTTAGACAAGTTCTTCAGTTTGTCCAAGAACCTA-AG
195 ACCA-AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAG
* * * *
20646 AGAAACAATTCTCACGTAAATATGTTTTTAATTCAAAGACTAAACCTTTTTTAGAAAATGATAAA
259 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC-AAAACTTTTTTACAAAATGACAAA
* * * * * *
20711 CTATTTAGACCAAATGATTCGATTTCTTGTGCATGGAATGTTTGGAAAATTGCTCGAAGGAATGG
323 CTATTTAGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGG
* *
20776 ATCGTGTTGAATACATTAAGGAACCGAAGTTATAACGGAACTCG
388 ATCGTCTTGAATACTTTAAGGAA-C-------T-A---AA---G
* *
20820 TAAAAGTTTAACAAGCTTAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT-
1 TAAAAGTTTGACAAG-TTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * * * *
20883 A--TGTT-ATTCAAATACCAAAAGTTGATAACAAAATGAAAAACTATTTAGACCAAATTATGT-G
65 AGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT-TCG
* * * * * * * *
20944 ATTTCTCGAGCATGGAATGTTTAGAAAATTGCTCGAGGGAATTGATTGTCTTCAATATTTTAAGG
129 ATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
** *
21009 AACTGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCTC-AGAACCAATA
194 AACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC-CAAGAACCAAGA
* * * * ** *
21073 AAGAAACAATTCTCATGTAAATAAGTTTTTAATTC-AAGATCAAGAGTTGATAACAAAATGACAA
258 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-CAAAACTTTTTTACAAAATGACAA
* ** * * * *
21137 ACTATTTAGACAAAACT-ATGTTATTTCTC-----TAGCATGTTCAAAAAAATTGCTTGAAGGAA
322 ACTATTTAGACCAAA-TGATGCGATTTCTCGAGAATGGAATGTTC-GAAAAATTGCTCGAAGGAA
*
21196 TGGATCGTCTTGAATTCTTTAAGGAACCGAAGCTATAAAACAACTCG
385 TGGATCGTCTTGAATACTTTAA-G----GAA-C--T---A-AA---G
* *
21243 TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAACAACCAAGAGTGAAACAATTCTCACGTAAATAA
1 TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* *
21308 GTTTTTAATTCAAAGA-CACAAACTTTTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA
66 GTTTTTAATTCAAAGACCA-AAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGA
* * * * * * * *
21372 TTTCACAAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATTGATTGTCTTTAATAGTTTAA-G-
130 TTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
*
21435 ------G---TAACA-AA---GTAAAAGTTTGACAAGTTCGGAAGTTCGTCGC-AGAACCAAGAG
195 ACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC-CAAGAACCAAGAG
* * * * * *
21486 AGAAACAATTCTCACGTAAATGAGTTTTTAATTCAAGGAGTAAAACATCTTTATAAAATGACAAA
259 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-CAAAACTTTTTTACAAAATGACAAA
* * * * * * *
21551 CTATTTAGACAAAATGATTCAATTTCCCGAGCATGGAGTGTTC-AAAAATT-TTCGAAGGAATGG
323 CTATTTAGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGG
*
21614 ATCGTCTTGAATACTTTTAAGGAACCAAAG
388 ATCGTCTTGAATAC-TTTAAGGAACTAAAG
* *
21644 TAAGAAAGGATCTCGTGA-AAGTTTGACAAGTTCTTAAGTTCATCCAAGAACCCA-AGAGAAACA
1 T-A-AAA-G-T-T--TGACAAGTTCGA-AAGTTC----G----TCCAAGAACCAAGAGAGAAACA
* * * * *
21707 ATTCTTACGT-AATATGTTTTTAATTTAAAGACCAAAACTTGTTTATAAAATGAGAAACTATTTA
50 ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTA
* * * * *
21771 GACCAAATGAAGT-AATTT-CC---C---G-A-G-----AAAATTTCTCGAAGGAATGCATCATC
115 GACCAAATG-ATTCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTC
* * * * * *
21821 TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAGGTTTGACAAGTTTGAAAGTTTG
179 TTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCG
* * * * * *
21886 TCCCATAACCAACAGAGAAACAATTCTCACGTAAA-AAGTTTTTAATTTAAAGACCAAAACCTGT
244 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-CAAAACTTTT
* * * *
21950 TTACAAAAT-ACAAACTATTTAGACCAAATGATTCGATTACCCGAGTATGGAATGTTCGAAAAAT
308 TTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGAAAAAT
* *
22014 TGCTCGAAAGAATGGATCGTCTTGAATATTTTAAGGAACCAAAGTTATAAAGGAACTCG
373 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-C-------T--A--AA---G
* *
22073 TAAGAGTTTGACAAGTTGGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
1 TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* *** * * *
22138 GTTTTTAATCCAAAGACACAATTTTTTTTTTATAAAATGACAAACTATTTAGACGAAATGATGT-
66 GTTTTTAATTCAAAGAC-CAA-AACTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT-TC
** * * * *
22202 GATTTCAAGAGAATTGAATGTTCGAAAAATTGCTCGAAGGAATTGATCGTCTTGAATACTTTAAG
128 GATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
* * * * *
22267 GTACC-----------A-AA---GTAAAAGTTTGACAAGTTCGGAAGTTCATCCCAGAACTAGGA
193 GAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGA
* * * * *
22317 AAGAAACAATTCTCACGTAAATTAGTTTTT-ATTCAAAGACCAAAACATGTTTACAGAATGACAA
258 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-CAAAACTTTTTTACAAAATGACAA
* * * * * * * * * * **
22381 AATTTTTAGACAAAATGATTCAATTTCCCTAGCATGGAATGTTCAAAAAATTGTTTAAAGGAATG
322 ACTATTTAGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATG
*
22446 GATTGTCTTGAATACTTTTATA-GAACCAAAGTAATAAAGGATTGTG
387 GATCGTCTTGAATAC-TTTA-AGGAA-C-------T-AA--A----G
*** *
22492 TAAAAGTTTGACAAGTTCTTCAGTTCGTCCAAGAACC-A-AGAGAAACAATTCTCACGTAAATAC
1 TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * *
22555 GTTTTTAATTCAAAGACCAAAACTTGTTTAGAATATGACAAACTATCTA-ACCAAATGATGT-GA
66 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT-TCGA
* * *
22618 TTT-CC---C---G-A-G-----AAAACTGCGT-GAAGGAATGGATCGTCTTGAATAATTTATGG
130 TTTCCCGAGCATGGAATGTTCAAAAAATTGC-TCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * * * **
22668 AACCAATGTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCGGATGTTCGTCCATGAACCTTGAG
194 AACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAG
* * * ** *
22733 AGAAATAATTCTCATGTAAATAAGTTTTTAAATT-AAAGACCAAAAGTTGATAACAAAATGACAA
259 AGAAACAATTCTCACGTAAATAAGTTTTT-AATTCAAAGA-CAAAACTTTTTTACAAAATGACAA
* * * * *
22797 ACTATTTAGACTAAACT-ATGCGATTTTTCGAGCATGGAATGTTCGGAAAATTGCTTGAAGGAAT
322 ACTATTTAGACCAAA-TGATGCGATTTCTCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAAT
* *
22861 GGATCATCTTGAATTCTTTAAGGAATCATAGTTATAAAAGAAGTCG
386 GGATCGTCTTGAATACTTTAAGGAA-C-------T---A-AA---G
* * *
22907 TAAAAGTTTGACAAGTTC-AGAAGTTTGTCCAAGAACCTAGAGAAAAACAATTCTCACGTAAATA
1 TAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * * * * *
22971 AGTTTTTAATTC-AAGATCAAAAGTTGATAACAAAAAT-AAAAAGTATTTAGACAAAACT-ATGC
65 AGTTTTTAATTCAAAGACCAAAACTTGTTTAC-AAAATGACAAACTATTTAGACCAAA-TGATTC
* *
23033 GATTTCCTGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATTCTTTAAG
128 GATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAG
*
23098 GAACCAAAGTTATAAAAGAACTCGT-AAAGATTTGACAAGTTCGGAAGTTTGTCTC-AGAACCAA
193 GAACCAAAGTTATAAAAGAACTCGTAAAAG-TTTGACAAGTTCGGAAGTTCGTC-CAAGAACCAA
* * * *
23161 CAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAACACAAAAATTTGTTTACAAAATGAC
256 GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAACTTT-TTTACAAAATGAC
* * * * * * * *
23226 AAACTATTTAGACCAAATAATGTGATTTCTTGTA-CATGAAAAGTTCGAAAATTTGCTTGAAGGA
320 AAACTATTTAGACCAAATGATGCGATTTCTCG-AGAATGGAATGTTCGAAAAATTGCTCGAAGGA
* * *
23290 ATGAATCGTCTTGAATACATTAATGAACCGAAGTTATAACGGAACTCG
384 ATGGATCGTCTTGAATAC-TT--T-AA--G--G----AAC-TAA--AG
* * * **
23338 TAAAAGTTTGACAAGTTCGAAAGTTCATCCAAAAACCAAGAGAGAAACAATTCTAACACAAATAA
1 TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * ** * * * * *
23403 GTTTTTAATTCTAAGA-CAAAAGTTAATAACAAAATGAAAAATTATTTAGACCAAA-GATGCTAT
66 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGAT
* * * *
23466 TTCCCGAGCATGGAATATT-AAGAAAATTGCTCGAAGGAATGGATTGTCTTCAATATTTTAAGGA
131 TTCCCGAGCATGGAATGTTCAA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* **
23530 ACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCTC-AGAACC--TTG
195 ACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC-CAAGAACCAAGAG
* * ** *
23592 AGAAACAATTCTCACATAAGTAAAATTTTAATTCAAAGACAAAAATTTGTTTACAAAATGACAAA
259 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAACTTT-TTTACAAAATGACAAA
* * * * *
23657 CTATTTAGACCAAATGATACGATTTCTTGTGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGG
323 CTATTTAGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGG
* *
23722 ATTGTCTTGAATACATTAAGGAACCAAAGTTATAACGGAACTCG
388 ATCGTCTTGAATACTTTAAGGAA-C-------T-A---AA---G
*
23766 TAAAAGTTTGACAAGTTC-AGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGCAAATA
1 TAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * * * * * *
23830 AGCTTTTAATTAAAAGTCCAAAAGTTGATAACAAAATGAAAAACTATTTGGACCAAATGATGCGA
65 AGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGA
* * * * *
23895 TTTCCAGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAAGGGATCGTCTTCAATATTTTAAGGA
130 TTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
** * ** *
23960 ACTGAAGTTATAAAAGATCTCGTAAAAGTTTGACAAGTTTAGAAGTTCGTCTCAA-AACCAATAG
195 ACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC-CAAGAACCAAGAG
* * * * *
24024 AGAAACAATTCTTATGTAAACAAGTTTTTAATTCAAAGACAAAAAATTGTTTACAAAATGACAAA
259 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC-AAAACTTTTTTACAAAATGACAAA
* * * * * * * * *
24089 CTATTTAGACTAAATGATGTGATTTCTTGTGCATGAAATATTCAAAAAATTGCTCAAAGGAATGG
323 CTATTTAGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGG
* *
24154 ATCGTCTTCAATACATTAAGGAATCAATGTTATAACGAAACCCG
388 ATCGTCTTGAATACTTTAAGGAA-C-------T----AAA---G
*
24198 TAAAAGTTTGACAAGTT-GAGAAGTTCGTCCAAGAACCTAGAGAGAAACAATTCTCACGTAAATA
1 TAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * * * * * * * *
24262 AGTTTTTAATTC-AAGATCAAAAGTTGATAACAAAAAGAAAAAGTATTTAGACAAAACT-ATGCG
65 AGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGATTCG
* *
24325 ATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATTGTCTTGAATTCTTTAAGG
129 ATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
** * ** * *
24390 AACCAAAGTTATAAAAGAACTCAAAAAAGTTTGAAAAGTTCAAAAGTTCGTCTTAA-AACCAATA
194 AACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTC-CAAGAACCAAGA
* * *
24454 GAGAAATAATTTTCACGTAAATAAGTTTTTAATTCAAAGACAAAAAATTTGTTTACAAAATTGAC
258 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC-AAAACTTT-TTTACAAAA-TGAC
* * * * * *
24519 AAACTATTTAGACCAAATGATTCGATTTCTTGTA-CATGGAGTGTTCAAAAAATTGCTCAAAGGA
320 AAACTATTTAGACCAAATGATGCGATTTCTCG-AGAATGGAATGTTCGAAAAATTGCTCGAAGGA
* *
24583 ATAGATCGTCTTGAATACATTAAGGAACCGAAGTTATAACGAAACTCG
384 ATGGATCGTCTTGAATACTTTAAGGAA-C-------T----AAA---G
** * * * * *
24631 TAAAAGTTTGAGTAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCATGAAAATTA
1 TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
*
24696 GTTTTTAATTCAAAGA-CACAAACTTTTTTACAAAATGACAAACTATTTAGACCAAATG-TTGCG
66 GTTTTTAATTCAAAGACCA-AAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATT-CG
* * * *
24759 ATTTCCTGAGCATGAAATGTTCGAAAAATTGCTCGAAGGAATGAATCGTCTTGAATACTTTAA-G
129 ATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
* * *
24823 -------G---TAACA-AA---GTAAAAGTTTGACAAGTTCGAAAGTTTGTCCCAA-AACCAAGA
194 AACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGT-CCAAGAACCAAGA
* *
24873 GAGAAACAATTCTCACGTAAATGAGTTTTTAATTCAAAGAGTAAAA-TATTTTTACAAAATGACA
258 GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-CAAAACT-TTTTTACAAAATGACA
* *** * * * *
24937 AACTATTTAGACAAAATGATTAAATTTCCCTA-ACATGGAATGTTCAGAAAAATT-TTCGGAGGA
321 AACTATTTAGACCAAATGATGCGATTTCTCGAGA-ATGGAATGTTC-GAAAAATTGCTCGAAGGA
* * *
25000 ATGGATCGTCTTTAATGCTTTAAGGAACCAAAG
384 ATGGATCGTCTTGAATACTTTAAGGAACTAAAG
* * *
25033 TAATAAAGGATCTCGTGA-AAGTTTGACAAGTTCTTAAGTTCATCCAAGAACCCA-AGAGAAAGA
1 T-A-AAA-G-T-T--TGACAAGTTCGA-AAGTTC----G----TCCAAGAACCAAGAGAGAAACA
* * * * *
25096 ATTCTAAGGTAAATATGTTTTTAATTCAAAGACC--AA-TTGGTTTAGAAAATGGCAAACTATTT
50 ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTT-GTTTACAAAATGACAAACTATTT
** * * * *
25158 AGACCAAATGAAGCGATTT--C---C-T-G-A-G-----AAAATTGCACAAAGGAATGCAACGTC
114 AGACCAAATGATTCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTC
* * *
25209 TTGGATACTTTAAGAAACCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCG
179 TTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCG
* * * * *
25274 TCCCAA-AACCAATAGAGAAACAATTCTCACGTAAA-AAGTTTTTAATTTAAAGACCAAACCCTG
244 T-CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-CAAAACTTT
* * * * * * *
25337 TTTACATAATGACAAACTATTTGGATCAAATGATTCGATTACCCGAGCATGGAATGTTC-AGAAA
307 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGA-AAA
* *
25401 ATTGCTCGAAAGAATGGATCGTCTTGAATACTTCAAGGAACCGAAGTTATAAAGGAACTCG
371 ATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA-C-------T--A--AA---G
* * * * * * * *
25462 TAAAAGTTTGACAGGTTTGGAAGCTCATCCAAGAACCCA-AGAGAAACAATTTTCACGTAAATAC
1 TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * *
25526 GTTTTAAATGCAAAGACCAAAACTTGTTTAGAAAATGACAAACTATTTAGACCAAATGATGT-GA
66 GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT-TCGA
** * *** * * ** *
25590 TTTCTTGTGCATGGAATGTTTGGAAAATTGCTTGAAAGAATGGATTTTCTTGAATACATTAAGGA
130 TTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* * * *
25655 ACCGAAGTTATAATAGAACTCGTAAAAGTTTGCCAAGTTCAGAAGTTCGT-------CC---A-A
195 ACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
* ** * *
25709 G----AATTCTCACGTAAATAAG---TT-ATTCAAAGACCAAAAGTTGATAACAAAATGAAAAAC
260 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-CAAAACTTTTTTACAAAATGACAAAC
* * * * * * *
25766 TATTTAGACCAAATGATGCAATTTTTCGAGCATGGAATGTTAGGAAAATTGCTTGAAGAAATGGA
324 TATTTAGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGA
* * *
25831 TCGTTTTCAATATTTTAAGGAACCAAAGTTATAAAAAAAACTCG
389 TCGTCTTGAATACTTTAAGGAA-C-------T-----AAA---G
* * * * * *
25875 TAAAAAGTTCGACAAGTTCGGAAGTTCGTCTCGA-AACCAATAAAGAAACAATTCTCATGTAAAT
1 T-AAAAGTTTGACAAGTTCGAAAGTTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * * * * *
25939 AAGTTTTTAATTC-AAGATCAAAAGTTGGTAACAAAATGACAAGCTTTTTAGACAAAACT-ATGT
64 AAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA-TGAT-T
* * * * *
26002 -GATTTACCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCCTTTTGAATTCTTTAA
127 CGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAA
** * * * *
26066 -GAGACCGGAGTTATAAAAGAATTCATAAAGGTTTGACAAGTTCGGAAGTTCGTCTAAGAACCAA
192 GGA-ACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAA
* * * *
26130 GGGTGAAACAATACTCACGTAAATAAGTTTTTAATTCAAAGATACAAACTTTTTTTACAAAATGA
256 GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACA-AAAC-TTTTTTACAAAATGA
* * *
26195 CAAACTATTTAGACCAAATGATGCGATTTCACGATAATGGAATGTTCGAAAAATTGTTCGAAGGA
319 CAAACTATTTAGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGA
* * * *
26260 ATTGATCGTCTTGAATAGTTTAAGG-TCCAAAG
384 ATGGATCGTCTTGAATACTTTAAGGAACTAAAG
* * * *
26292 TAAAAGTTTGACAAGTTGGAAAGTTTGTCGCAA-AACCAAGAGAGAAACAATTCTCATGTAAATG
1 TAAAAGTTTGACAAGTTCGAAAGTTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
** * * ** * *
26356 AGTTTTTAATTCAAAGAGTAAAACATCTTTACAAAATGACAAACTATTTAGAAAAAAAGATT-AA
65 AGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGA
* * * ** * * *
26420 TTTCCCGAGCATGGAGTGTTCGAAAATTTTTTTGATGGAATGGATCATCTTGAATACTTTTAAGG
130 TTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC-TTTAAGG
* * * * ** *
26485 AACCAAAGTAATAAAGGATCTCGTGAAAGTTTGACAAGTTCTTAAGTTCGTCCAAGAACCCA-AG
194 AACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAG
*
26549 AGAAA-AATTCTCACGTAAATAGGTTTTTAATTCAAAGAC
259 AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
26588 TGATATGAGC
Statistics
Matches: 6407, Mismatches: 1026, Indels: 853
0.77 0.12 0.10
Matches are distributed among these distances:
400 104 0.02
401 4 0.00
402 3 0.00
403 4 0.00
404 6 0.00
405 9 0.00
406 5 0.00
407 10 0.00
408 17 0.00
409 12 0.00
410 4 0.00
411 20 0.00
412 274 0.04
413 308 0.05
414 847 0.13
415 736 0.11
416 629 0.10
417 708 0.11
418 214 0.03
419 146 0.02
420 13 0.00
421 5 0.00
422 31 0.00
423 119 0.02
424 11 0.00
425 9 0.00
426 16 0.00
427 202 0.03
428 332 0.05
429 65 0.01
430 328 0.05
431 499 0.08
432 332 0.05
433 196 0.03
434 181 0.03
435 3 0.00
437 1 0.00
439 1 0.00
442 1 0.00
443 2 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.29
Consensus pattern (416 bp):
TAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
GTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGAT
TTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
CCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAG
AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAACTTTTTTACAAAATGACAAACTA
TTTAGACCAAATGATGCGATTTCTCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATC
GTCTTGAATACTTTAAGGAACTAAAG
Found at i:26192 original size:217 final size:213
Alignment explanation
Indices: 25752--26586 Score: 703
Period size: 217 Copynumber: 3.9 Consensus size: 213
25742 AAAGTTGATA
* * ** * * *
25752 ACAAAATGAAAAACTATTTAGACCAAATGATGCAATTTTTCGAGCATGGAATGTTAGGAAAATTG
1 ACAAAATGACAAACTATTTAGACAAAAT-ATGTGA-TTTCCGAGCATGGAATGTTCGAAAAATTG
* * * * * * * *
25817 CTTGAAGAAATGGATCGTTTTCAATATTTTAAGGAACCAAAGTTATAAAAAAAACTCGTAAAAAG
64 CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTAT--AAAGAATTCAT-AAAAG
* * * * *
25882 TTCGACAAGTTCGGAAGTTCGTCTCGA-AACCAATAAAGAAACAATTCTCATGTAAATAAGTTTT
126 TTTGACAAGTTCGGAAGTTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* ** *
25946 TAATTC-AAGAT-CAAAAGTTGGTA
190 TAATTCAAAGATAC-AAACTTCTTT
* *
25969 ACAAAATGACAAGCTTTTTAGACAAAACTATGTGATTTACCGAGCATGGAATGTTCGAAAAATTG
1 ACAAAATGACAAACTATTTAGACAAAA-TATGTGATTT-CCGAGCATGGAATGTTCGAAAAATTG
* * * ** *
26034 CTCGAAGGAATGGATCCTTTTGAATTCTTTAA-GAGACCGGAGTTATAAAAGAATTCATAAAGGT
64 CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA-ACCAAAGTTAT-AAAGAATTCATAAAAGT
* * * *
26098 TTGACAAGTTCGGAAGTTCGTCTAAGAACCAAGGGTGAAACAATACTCACGTAAATAAGTTTTTA
127 TTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
*
26163 ATTCAAAGATACAAACTTTTTTT
192 ATTCAAAGATACAAAC-TTCTTT
* * **
26186 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCACGATAATGGAATGTTCGAAAAATTG
1 ACAAAATGACAAACTATTTAGACAAAAT-ATGTGATTTC-CGAGCATGGAATGTTCGAAAAATTG
* * * *
26251 TTCGAAGGAATTGATCGTCTTGAATAGTTTAAGG-TCC--------AAAG------TAAAAGTTT
64 CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAGAATTCATAAAAGTTT
* * *
26301 GACAAGTT-GGAAAGTTTGTCGCAA-AACCAAGAGAGAAACAATTCTCATGTAAATGAGTTTTTA
129 GACAAGTTCGG-AAGTTCGTC-CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
*
26364 ATTCAAAGAGTA-AAACATCTTT
192 ATTCAAAGA-TACAAACTTCTTT
* * * * * *
26386 ACAAAATGACAAACTATTTAGAAAAAAAGAT-TAATTTCCCGAGCATGGAGTGTTCGAAAATTTT
1 ACAAAATGACAAACTATTTAG-ACAAAATATGTGATTT-CCGAGCATGGAATGTTCGAAAAATTG
* * * * * * * *
26450 TTTGATGGAATGGATCATCTTGAATACTTTTAAGGAACCAAAGTAATAAAGGATCTCGTGAAAGT
64 CTCGAAGGAATGGATCGTCTTGAATAC-TTTAAGGAACCAAAGTTATAAAGAAT-TCATAAAAGT
** * *
26515 TTGACAAGTTCTTAAGTTCGTCCAAGAACCCA-AGAGAAA-AATTCTCACGTAAATAGGTTTTTA
127 TTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
26578 ATTCAAAGA
192 ATTCAAAGA
26587 CTGATATGAG
Statistics
Matches: 503, Mismatches: 81, Indels: 71
0.77 0.12 0.11
Matches are distributed among these distances:
199 46 0.09
200 37 0.07
201 77 0.15
202 4 0.01
207 4 0.01
209 4 0.01
214 31 0.06
215 73 0.15
216 55 0.11
217 170 0.34
218 2 0.00
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (213 bp):
ACAAAATGACAAACTATTTAGACAAAATATGTGATTTCCGAGCATGGAATGTTCGAAAAATTGCT
CGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAGAATTCATAAAAGTTTGA
CAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
AAAGATACAAACTTCTTT
Found at i:27192 original size:80 final size:80
Alignment explanation
Indices: 27048--27197 Score: 264
Period size: 80 Copynumber: 1.9 Consensus size: 80
27038 ACTAATTTCA
* *
27048 TTTTAACTCTTGTAGGGAAGCTAATGAGTCATGTCTCTTCATTAGGATCTGATGTAGTTAAAAAG
1 TTTTAACTCTTGTAGGAAAGCTAATGAGTCATGTCTCTTCATTAGGATCTGATGTAGCTAAAAAG
*
27113 GCATGACAATTTCGT
66 ACATGACAATTTCGT
*
27128 TTTTAACTCTTGTAGGAAAGCTAATGAGTCATGTCTCTTCATTAGGATCTGATGTAGCTGAAAAG
1 TTTTAACTCTTGTAGGAAAGCTAATGAGTCATGTCTCTTCATTAGGATCTGATGTAGCTAAAAAG
27193 ACATG
66 ACATG
27198 GCATTTCTCC
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
80 66 1.00
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.35
Consensus pattern (80 bp):
TTTTAACTCTTGTAGGAAAGCTAATGAGTCATGTCTCTTCATTAGGATCTGATGTAGCTAAAAAG
ACATGACAATTTCGT
Done.