Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013902.1 Kokia drynarioides strain JFW-HI SEQ_128931, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2365
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31


Found at i:527 original size:69 final size:70

Alignment explanation


    Indices: 440--588  Score: 246
    Period size: 69  Copynumber: 2.1  Consensus size: 70

        430 AAAAGATTGG

                      *               *         *        *                 * 
        440 TGGCGACTCCCATTTTCCAATTTTTAGATAATTCTCGAAACTAACGTAC-AAAAAATGGTTTCGA
          1 TGGCGACTCCAATTTTCCAATTTTTAAATAATTCTCAAAACTAACATACAAAAAAATGGTTTCAA

                 
        504 CAGCT
         66 CAGCT

                                                                             
        509 TGGCGACTCCAATTTTCCAATTTTTAAATAATTCTCAAAACTAACATACAAAAAAATGGTTTCAA
          1 TGGCGACTCCAATTTTCCAATTTTTAAATAATTCTCAAAACTAACATACAAAAAAATGGTTTCAA

                 
        574 CAGCT
         66 CAGCT

                      
        579 TGGCGACTCC
          1 TGGCGACTCC

        589 TCTGCGGACT


Statistics
Matches: 74,  Mismatches: 5, Indels: 1
        0.93            0.06        0.01

Matches are distributed among these distances:
  69   45  0.61
  70   29  0.39

ACGTcount: A:0.34, C:0.22, G:0.13, T:0.31


Consensus pattern (70 bp):   
TGGCGACTCCAATTTTCCAATTTTTAAATAATTCTCAAAACTAACATACAAAAAAATGGTTTCAA
CAGCT
Done.