genome.fa.s13903.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013903.1 Kokia drynarioides strain JFW-HI SEQ_128932, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131441

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85--124	3	13.0	3	84	5	53	60	0	2	37	1.11
334--375	22	1.9	23	85	9	61	21	14	26	38	1.91
332--380	21	2.3	21	76	13	55	18	18	24	38	1.93
1170--1536	59	6.3	59	86	4	465	32	29	4	32	1.79
1169--1536	117	3.1	116	84	3	486	32	30	4	32	1.79
1161--1543	176	2.2	176	87	4	540	32	30	5	31	1.80
4137--4211	24	3.1	24	88	0	114	26	21	24	28	1.99
18464--18572	55	2.0	55	98	0	209	39	18	11	31	1.85
20871--20968	27	3.6	27	84	0	106	19	19	36	24	1.95
22919--22947	3	9.7	3	100	0	58	31	0	0	68	0.89
25164--25222	19	3.1	19	87	0	91	42	16	22	18	1.89
25164--25242	38	2.1	39	90	2	124	43	18	20	17	1.89
25265--25333	27	2.6	27	81	4	77	23	20	31	24	1.98
29702--29736	16	2.2	16	89	0	52	25	11	0	62	1.28
33761--33795	16	2.2	16	89	0	52	25	11	0	62	1.28
36197--36251	20	2.6	21	72	16	60	65	21	1	10	1.33
36219--36438	12	19.1	12	71	11	59	68	17	4	9	1.33
36261--36320	24	2.5	24	94	0	102	68	15	6	10	1.38
36255--36424	47	3.8	43	75	15	134	69	17	4	8	1.31
36370--36464	22	4.5	22	80	8	101	72	16	2	8	1.19
36859--36894	17	2.1	17	89	0	54	22	19	36	22	1.95
42592--42707	55	2.1	56	96	3	225	22	15	25	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49388--49444	19	2.8	20	76	12	64	42	0	1	56	1.10
49387--49440	28	2.0	27	85	10	74	40	0	1	57	1.09
49389--49449	10	6.4	9	74	9	50	37	0	1	60	1.07
53652--53970	141	2.2	142	86	3	428	28	10	9	52	1.66
54237--54273	14	2.5	15	84	16	51	64	2	0	32	1.07
57073--57132	30	2.0	31	84	12	81	65	5	3	26	1.29
57931--57969	6	6.5	6	82	11	53	17	0	2	79	0.84
59133--59240	48	2.2	48	98	0	207	41	11	7	39	1.69
63514--63635	37	3.2	37	85	2	145	27	27	20	25	1.99
63717--63770	26	2.1	26	89	0	81	25	20	24	29	1.99
72974--73132	82	2.0	81	94	1	282	23	28	16	30	1.96
76686--76790	52	2.0	52	92	0	174	32	16	15	36	1.90
79522--79613	46	2.0	46	95	0	166	17	20	18	43	1.88
83201--83562	192	1.9	195	91	3	606	38	13	9	38	1.77
86434--86476	16	2.8	16	86	6	54	34	0	65	0	0.93
86428--86488	7	8.7	7	89	5	70	40	0	59	0	0.98
94262--94292	15	2.1	15	93	0	53	51	0	16	32	1.44
94802--95124	109	2.9	110	82	0	360	32	18	20	27	1.96
95592--95768	29	6.3	29	74	8	96	52	10	14	22	1.72
95635--95781	57	2.6	56	86	4	197	53	12	14	19	1.72
95608--95762	28	5.5	29	80	4	156	54	11	12	21	1.68
96181--96244	33	1.9	33	87	0	92	40	1	14	43	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96606--96666	25	2.5	25	84	12	74	62	4	0	32	1.17
96726--96775	6	8.7	6	76	24	54	48	0	2	50	1.12
96725--96773	17	2.9	17	88	11	82	46	0	2	51	1.12
96739--96787	24	2.1	24	85	11	66	46	2	2	48	1.25
97478--97543	31	2.2	30	82	15	82	46	6	3	43	1.43
98538--98749	30	7.1	30	74	10	168	34	29	5	31	1.79
98525--98697	59	2.9	60	86	5	226	34	28	4	32	1.78
98605--98696	29	3.1	28	81	7	94	39	28	2	30	1.69
98536--98766	59	3.9	58	80	6	225	33	29	5	32	1.79
98810--98872	28	2.2	28	91	2	99	36	33	7	22	1.83
98810--98882	28	2.6	28	86	6	85	34	31	8	26	1.86
100641--100675	17	2.0	17	88	5	52	45	0	37	17	1.48
100986--101058	30	2.4	30	81	4	85	43	6	8	41	1.61
101003--101087	30	2.8	31	82	3	93	41	4	8	45	1.55
102548--102578	2	16.0	2	93	6	55	48	0	0	51	1.00
103097--103129	7	4.9	7	85	7	50	45	30	0	24	1.53
103106--103135	13	2.3	13	94	0	51	43	36	0	20	1.52
103157--103279	26	4.8	26	74	7	94	41	34	0	24	1.55
103251--103292	19	2.2	19	95	0	75	42	30	0	26	1.55
103272--103370	12	7.1	14	68	23	59	44	28	0	27	1.55
103294--103357	16	4.3	16	72	22	59	45	28	0	26	1.54
108358--108765	30	13.6	29	74	14	187	35	2	27	34	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108352--108737	60	6.4	60	75	11	323	35	2	27	34	1.71
108459--108774	121	2.6	120	78	8	338	33	3	28	34	1.73
111111--112047	49	19.1	49	76	4	681	17	29	17	34	1.94
111111--112047	99	9.6	99	78	3	639	17	29	17	34	1.94
120591--120700	38	2.9	38	95	0	193	45	13	10	30	1.76
124775--124831	21	2.6	21	83	13	62	21	7	5	66	1.36
125033--125076	15	2.9	15	78	15	54	20	4	0	75	0.98
127840--127864	11	2.3	11	100	0	50	16	0	0	84	0.63

Tables:   1

The End!