genome.fa.s13904.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013904.1 Kokia drynarioides strain JFW-HI SEQ_128933, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71940

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458--518	17	3.7	16	77	12	52	44	4	1	49	1.33
2105--2307	23	8.8	23	94	0	334	48	14	3	33	1.63
8104--8128	3	8.3	3	100	0	50	32	0	0	68	0.90
13783--14160	23	16.7	23	83	5	432	47	15	5	32	1.67
14231--14283	10	5.2	10	77	11	54	45	20	0	33	1.52
15556--15610	9	6.2	9	76	19	53	27	3	18	50	1.63
16098--16133	19	1.9	19	94	5	65	5	13	0	80	0.88
18379--18510	66	2.0	66	85	2	176	33	5	15	45	1.69
19500--19888	30	13.2	28	73	19	226	31	4	29	34	1.76
19500--19652	59	2.6	59	84	4	218	30	3	29	35	1.76
19508--19799	148	2.0	148	88	4	437	31	3	29	35	1.75
19600--19892	59	4.9	59	83	7	335	32	3	29	34	1.75
20979--21011	13	2.6	13	95	4	59	45	0	0	54	0.99
21683--21759	17	4.6	16	82	9	91	53	3	1	41	1.27
21684--21759	34	2.2	34	88	0	107	53	3	1	40	1.27
22277--22429	46	3.5	46	64	18	110	22	23	18	35	1.96
22277--22455	83	2.2	83	95	0	331	22	23	17	35	1.95
23252--23367	58	2.0	58	100	0	232	44	10	17	27	1.81
23253--23345	28	3.2	28	62	11	71	45	11	15	27	1.81
45106--45168	28	2.2	30	81	13	78	42	1	23	31	1.64
45177--45392	59	3.7	58	86	4	290	29	3	30	36	1.73
45196--45745	29	18.7	30	75	10	451	31	2	29	37	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45322--45745	59	7.2	59	88	3	574	30	1	29	38	1.67
46428--46567	66	2.1	66	93	0	235	12	47	22	17	1.80
46908--46940	13	2.6	13	95	4	59	45	0	0	54	0.99
47387--47436	23	2.3	20	80	10	55	14	18	42	26	1.87
47609--47690	6	14.3	6	68	23	52	53	3	1	41	1.26
47614--47690	17	4.6	16	82	9	91	53	3	1	41	1.27
47615--47690	34	2.2	34	88	0	107	53	3	1	40	1.27
50186--50212	2	13.5	2	100	0	54	48	0	0	51	1.00
57224--57274	24	2.1	24	88	0	75	21	9	11	56	1.63
57232--57294	24	2.6	24	82	5	65	25	11	12	50	1.73
58858--59225	29	12.5	29	73	10	273	34	29	4	31	1.76
58858--59253	30	13.5	30	73	12	281	34	30	4	31	1.78
58858--59253	117	3.4	117	80	5	392	34	30	4	31	1.78
58858--59253	176	2.2	176	82	6	446	34	30	4	31	1.78
58858--59253	59	6.7	57	81	7	341	34	30	4	31	1.78
59212--59270	28	2.1	28	93	3	102	33	30	10	25	1.89
59212--59280	28	2.5	28	88	6	88	30	28	10	30	1.90
60858--60899	22	2.0	20	86	9	57	47	0	0	52	1.00
63151--63196	18	2.4	20	82	10	60	45	2	0	52	1.13
63151--63196	19	2.4	19	89	7	67	45	2	0	52	1.13
64336--64399	29	2.2	30	88	2	94	56	14	6	23	1.61
65085--65141	20	2.8	20	78	10	62	43	28	0	28	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70248--70394	72	2.0	72	100	0	294	24	8	26	40	1.83
70404--70477	36	2.1	36	81	0	85	28	8	27	36	1.85
70415--70516	36	2.9	35	80	2	107	29	9	25	35	1.88
70434--70524	36	2.6	36	82	3	114	32	9	25	31	1.89

Tables:   1

The End!