genome.fa.s13908.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013908.1 Kokia drynarioides strain JFW-HI SEQ_128937, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  142081

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4800--4971	69	2.5	70	80	4	204	43	20	22	13	1.86
4801--4938	23	6.0	23	91	0	195	44	21	19	14	1.86
9716--9764	26	2.0	24	84	15	64	24	28	0	46	1.53
18160--18460	151	2.0	151	98	0	584	34	6	10	48	1.64
26410--26451	22	2.0	21	85	4	57	19	0	16	64	1.30
28699--28777	27	3.0	26	88	7	115	39	25	13	21	1.90
32328--32360	15	2.1	17	88	11	52	48	3	12	36	1.56
34375--34438	19	3.1	20	78	17	69	42	0	4	53	1.22
36985--37052	20	3.5	20	72	25	65	66	5	0	27	1.15
37118--37172	22	2.5	22	77	14	60	65	5	7	21	1.38
37183--37238	12	4.7	12	79	0	67	69	16	5	8	1.32
37183--37250	24	2.8	24	77	4	73	67	17	5	8	1.37
37196--37260	27	2.4	26	82	10	69	69	15	4	10	1.33
37226--37298	22	3.4	22	70	12	62	71	19	2	6	1.21
37826--38922	23	47.3	23	79	4	1103	47	13	5	33	1.66
37826--38922	46	23.6	46	87	3	1214	47	13	5	33	1.66
38737--38847	56	2.0	55	89	1	168	47	13	5	33	1.66
38704--38862	79	2.0	79	93	0	273	47	15	5	31	1.68
38691--38884	102	1.9	102	87	2	282	47	14	5	31	1.68
38668--38916	125	2.0	124	89	0	381	47	14	5	32	1.68
38647--38919	148	1.8	148	88	0	420	46	14	5	32	1.68
57325--57359	15	2.3	15	90	0	52	48	0	8	42	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58974--59257	52	5.4	52	87	1	372	34	23	13	28	1.93
60126--60167	20	2.1	20	91	8	68	33	23	0	42	1.55
66091--66125	4	8.8	4	100	0	70	25	0	22	51	1.48
66095--66129	16	2.4	14	90	9	52	25	0	22	51	1.48
68631--68701	26	2.8	26	86	2	90	30	16	28	23	1.97
73512--73576	34	1.9	34	93	0	112	33	20	13	32	1.91
75343--75617	51	5.3	51	87	3	365	29	22	14	33	1.94
79447--79954	94	5.4	94	86	2	648	26	18	25	29	1.98
99494--99869	93	4.0	93	93	0	644	28	30	18	22	1.97
100505--100569	27	2.4	27	80	14	71	46	3	3	47	1.33
107968--108007	20	2.0	20	85	0	53	25	27	25	22	2.00
115095--115155	28	2.2	28	84	0	77	26	11	32	29	1.91
115287--115450	30	5.5	30	80	11	160	37	4	25	32	1.77
115286--115450	59	2.8	58	80	9	167	36	4	24	33	1.77
115357--115470	59	1.9	59	82	10	144	35	5	26	33	1.79
117410--117463	17	3.2	17	86	5	74	50	7	1	40	1.41
117414--117447	16	2.1	16	100	0	68	52	11	0	35	1.38
117387--117483	17	5.6	17	78	9	72	49	7	3	40	1.46
117574--117621	21	2.2	23	77	11	55	16	0	14	68	1.21
117627--117713	23	3.7	23	81	4	95	29	11	17	41	1.84
122482--122510	13	2.2	13	100	0	58	44	13	0	41	1.44
125560--125589	16	1.9	15	93	6	51	53	0	13	33	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127324--127372	23	2.1	23	88	0	71	59	10	12	18	1.60
132870--132911	21	2.0	21	100	0	84	19	14	19	47	1.82
133990--134068	40	2.0	41	89	2	124	22	13	34	29	1.93
134001--134090	40	2.2	40	86	3	119	22	14	36	26	1.92
140923--141198	137	2.0	137	95	0	498	22	15	19	42	1.89

Tables:   1

The End!