Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013914.1 Kokia drynarioides strain JFW-HI SEQ_128944, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4814
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Found at i:440 original size:216 final size:215
Alignment explanation
Indices: 1--4780 Score: 4466
Period size: 216 Copynumber: 22.2 Consensus size: 215
* * * *
1 CAAAAGTTGGTTACGAAATGACAAACTATTTAGACCAAATAATGCTATTTTCCGAGCATGGAATG
1 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA-TTTCCGAGCATGGAATG
* ** * * * *
66 TTTGAAAAATTGCACAGAGGAATGGATCGTCTTTAATACTCTCAA-GAACCAAAGTTATAATAAA
65 TTCGAAAAATTGGTCAAAGGAATGGATAGTCTTGAATACT-TTAAGGAACCAAAG-T-T-ATAAA
* ** * * **
130 AGAACTTGTAAATTTTTGAAAAGTTTGTAAGTTAATCCAAGAACCAAGAGAGAAA-ATATTCTCA
126 AGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACA-ATTCTCA
* * * * *
194 TGCAAATAAATTTTAAATTCAAACAC
190 CGTAAATAAGTTTTTAATTCAAAGAC
* * * * * *
220 CAAAAGTTGTTTACCATATGACAAACTATTTTGACCAAATGATGCAATTTTCCGAGAATGCAATG
1 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA-TTTCCGAGCATGGAATG
** * * * *
285 TTCGAAAAATTGGTTGAAGGAATGCAT-GTTCTTAAATACTATT-ACGAAACAAAGTTATAAAAG
65 TTCGAAAAATTGGTCAAAGGAATGGATAG-TCTTGAATACT-TTAAGGAACCAAAGTTATAAAAG
* ** * * * ***
348 AACTTGTAAATTTTTGAAAAGTTCGGAAGTTCATCCAAGAACTGGGAGAGAAACAATTCTCACGT
128 AACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
413 AAATAAGTTTTTAATTCAAAGAC
193 AAATAAGTTTTTAATTCAAAGAC
436 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATG
1 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC-CGAGCATGGAATG
* ** * * *
501 CTCGAAAAA-TGGCTCAATTGAATGGATAGTCTTGAGTACTTTAAGGAACAAAAGTTGTAAAAGA
65 TTCGAAAAATTGG-TCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGA
* * ** * *
565 ACTCGTAAAAGTTTGACTAGTCCGTAAGTTAATCCGAGAACCAAGAGTGAAACAATTCTCACGTA
129 ACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
* *
630 AATAAGTTTTTAATTAAAAGAA
194 AATAAGTTTTTAATTCAAAGAC
* * * *
652 CAAAATTTGTTTGCAAAATCACAAACTATTTAGACCAAAAGATGCGATTTCCGGAGCATGGAATG
1 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC-GAGCATGGAATG
* * **
717 TT-TAGAAAA-TGGCTCAAAGGAATGGATAGTCTTGAATACTTTGAGGAACCAAAGTTATCGAAG
65 TTCGA-AAAATTGG-TCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAG
* * * *
780 AACTCGTAAAAGTTCGACCAGTTCGTAAGTTCGTCCTAGAACCACA-AGAGGAACAATTCTCACG
128 AACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCA-AGAGAGAAACAATTCTCACG
* *
844 TAAATAGGTTTTTAATTCGAAGAC
192 TAAATAAGTTTTTAATTCAAAGAC
* * * * * * * * * *
868 TAAAAGTTGTTTACATAATGACAAAGTTTTTGGACCGAATGATACTATTCCCGAGCATGGAAAGT
1 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCGAGCATGGAATGT
* * * * * * ** * *
933 TCAAAAAATTGGTCGAAGGAATGGATCGTCTTGAGTACTCTCAGGAACTTAAGTTACAAAAGAGC
66 TCGAAAAATTGGTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
** * * * ** *
998 TATTAAATGTTCCG-C-AGTACAAAAGTTCGTCCAAGAA-C---AGTGAAACAATTCTCACGTAA
131 TCGTAAAAGTT-TGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA
1057 ATAAGTTTTTAATTCAAAGAC
195 ATAAGTTTTTAATTCAAAGAC
*
1078 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCTCGAGCATGGAATG
1 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC-CGAGCATGGAATG
* * * * *
1143 TTCGGAAAA-TGGCTCAAATGAATGGATAGTCTTGAGTACTTTAAGGAACCGAAGTTGTAAAAGA
65 TTCGAAAAATTGG-TCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGA
* * *** *
1207 ACTCGTAAAAGTTTGACTAGTCCGTAAGTTCGTTTGAGAACCAAGAGAGAAACAATTCTAACGTA
129 ACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
* *
1272 AATAAGTTTATAATTTAAAGAC
194 AATAAGTTTTTAATTCAAAGAC
* * * * * * *
1294 CAAAATTTGTTTGCAAAATCACAAACTATTTAGATCAAAAGATGAGATTTTCGGAGCATGGAATG
1 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA-TTTCCGAGCATGGAATG
* * *
1359 TTC-AGAAAA-TGGCTCAAAGGAATGGATAGTCTTGAATACTTTGAGGAACCGAAGTTGTAAAAG
65 TTCGA-AAAATTGG-TCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAG
* * ***
1422 AACTCGTAAAAGTTTGACTAGTCCGTAAGTTCGTTTGAGAA--AAGAGAGAAACAATTCTCACGT
128 AACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
*
1485 AAATAAGTTTTTAATTTAAAGAC
193 AAATAAGTTTTTAATTCAAAGAC
** * * * * *
1508 CAAATTTTGTTTGCAAAATCACAAACTATTTAGACCAAAAGATACGATTTTCGGAGCATGGAATG
1 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA-TTTCCGAGCATGGAATG
* ** ** * * **
1573 TTC-AGAAAATAGCACAAAGGAATGGATAGTCTTGAACGCTTTGAGTAACCAAAGTTATTGAAGA
65 TTCGA-AAAATTGGTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGA
* * * *
1637 ACTCGTAAAAGTTCGACCAGTTCGTAAGTTCGTCCTAGAACCACA-AGAGGAACAATTCTCACGT
129 ACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCA-AGAGAGAAACAATTCTCACGT
* *
1701 AAATAGGTTTTTAATTCGAAGAC
193 AAATAAGTTTTTAATTCAAAGAC
* * * * * * * * *
1724 TAAAAGTTGTTTACATAATGACAAAGTTTTTGGACCGAATGATACGATTCCCGAGCATGGAAAGT
1 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCGAGCATGGAATGT
* * * * * * ** * *
1789 TCAAAAAATTGGTCGAAGGAATGGATCGTCTTGAGTACTCTCAGGAACTTAAGTTACAAAAGAGC
66 TCGAAAAATTGGTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
** * * * ** * *
1854 TATTAAATGTTCCG-CAAGTACAAAAGTACGTCCAAG-A--AA-AGTGAAACAATTCTCACGTAA
131 TCGTAAAAGTT-TGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA
*
1914 ATAAGTTTTTATTTCAAAGAC
195 ATAAGTTTTTAATTCAAAGAC
*
1935 CAAAAGTTGTTTACAAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGAAAT
1 CAAAAGTTGTTTAC-AAAATGACAAACTATTTAGACCAAATGATGCGATTTC-CGAGCATGGAAT
* *
2000 GTTCGAAAAA-TGGCTCAAATGAATGGATAGTCTTGAGTACTTTAAGGAACCAAAG---T-----
64 GTTCGAAAAATTGG-TCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAG
* * * * * *
2056 ---T-GTAAAAGTTTGACTAGTCCGTAAGTTCATCCGAGAAACAAGAGAGAAACAATTCACACGT
128 AACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
* *
2117 AAATAAGTTTTTAATTTAAAGGC
193 AAATAAGTTTTTAATTCAAAGAC
* * * *
2140 CAAAATTTGTTTGCAAAATCACAAACTATTTAGACCAAAAGATGCGATTTCCGGAGCATGGAATG
1 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC-GAGCATGGAATG
* *
2205 TTC-AGAAAA-TGGCTCAAAGGAATGGATAGTCTTGAATACTTTGAGGAACCAAAGTTAT--CAG
65 TTCGA-AAAATTGG-TCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAG
* * * * *
2266 AACTCGTAAAAGTTCGACCAGTTCGTAAGTTCGTCCTAGAACCACA-AGAGGAACAATTTTCACG
128 AACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCA-AGAGAGAAACAATTCTCACG
* *
2330 TAAATAGGTTTTTAATTCGAAGAC
192 TAAATAAGTTTTTAATTCAAAGAC
* * * * * * ** * * *
2354 TAAAAGTTGTTTACATAATGACAAAGTTTTTGGACCGAACAATACGATTCCCGAGCATGGAAAGT
1 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCGAGCATGGAATGT
* * * ** * *
2419 TCGAAAAATTGGTCAAAGGAATGGATCGTCTTGAGTACTTTCAGGAACTTAAGTTACAAAAGAGC
66 TCGAAAAATTGGTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
* * * * * * * *
2484 TAGTAAATGTTCCG-CATGTACGAAAGTTCATCCAAGAACCATGAGAGAAACAATTCTCACGTAA
131 TCGTAAAAGTT-TGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA
2548 ATAAGTTTTTAATTCAAAGAC
195 ATAAGTTTTTAATTCAAAGAC
* * * *
2569 CGAAAA-TTGTTTAGAAAATGATAACCTATTTAGACCAAATGATGTC-ATTTCTCGGGCATGGAA
1 C-AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG-CGATTTC-CGAGCATGGAA
* ** * * * *
2632 TGCTT-GAAAAATAGCACAAAGGAATGGATCA-CCTTTAATAGTTTAAGGAACCGAAGTTATAAA
63 TG-TTCGAAAAATTGGTCAAAGGAATGGAT-AGTCTTGAATACTTTAAGGAACCAAAGTTATAAA
* * *
2695 GGAACT-GATAAAAAGTTTGACAAGTTTAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTGT
126 AGAACTCG-T-AAAAGTTTGACAAG-TTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
*
2758 CATGTAAAT-A-TTTTTAATTCAAAGAC
188 CACGTAAATAAGTTTTTAATTCAAAGAC
* * * * * * *
2784 GAAAAGTTGATTACAAAATGAAAAACTATTTAGACCAAACGATGCGATTTCCCAAGCGTAGAATG
1 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-CCGAGCATGGAATG
* * * * * **
2849 TTGGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAA
65 TTCGAAAAATTGGTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
* * * * * * *
2914 CTCATAAAAGCTTGACAAGTTTGAAAGTTAAG-CCAAGAACAAAGAGAGAAACAGTTCTCACGTA
130 CTCGTAAAAGTTTGACAAGTTCGTAAGTT-CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
* * *
2978 AATAAGTTTTTAATACATAGAG
194 AATAAGTTTTTAATTCAAAGAC
* * * *
3000 CAAAAGTTGGTTACGAAATGACAAACTATTTAGACCAAATAATGCGATTTTCCGAGCATTGAATG
1 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA-TTTCCGAGCATGGAATG
* * * * *
3065 TTCGAAAAATTGGTCGAAGG-ATAGGATCGGCTTGAATAATTTAAGGAACCGAAGTTATAAAAGA
65 TTCGAAAAATTGGTCAAAGGAAT-GGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGA
* * * *
3129 ACTCGTAAAAGTTTGACAAGTTTGGAAGTTCATCCAAAAACCAAGAGAGAAACAATTCTCACGTA
129 ACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
* *
3194 AATAAGTTTTCAAGTCAAAGAC
194 AATAAGTTTTTAATTCAAAGAC
* * *** *
3216 CAAAAGTTGTTTACAAAATTAAAAAAAC-ATTTAGAATGAATGATGCGATTTACCGAGCCTGGAA
1 CAAAAGTTGTTTACAAAA-T-GACAAACTATTTAGACCAAATGATGCGATTT-CCGAGCATGGAA
* * * * * * *
3280 TGCTCGAAAAATTAGTCGAAGGAATGGGTCA-TCTTTAATGCTCTT-AGAAACCAAAGTTATAAA
63 TGTTCGAAAAATTGGTCAAAGGAATGGAT-AGTCTTGAATACT-TTAAGGAACCAAAGTTATAAA
* *
3343 AGAACTGGTAAATA-TTTGACAAGTTC-TGAAGTTCGTCCAAGAACCAAGAGAGAAACAATCCTC
126 AGAACTCGTAAA-AGTTTGACAAGTTCGT-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* **
3406 ATGTAAATCTGTTTTTAATTCAAAGAC
189 ACGTAAATAAGTTTTTAATTCAAAGAC
** *
3433 CAAAAGGTT-TTTACAAAATGACAAACTATTTAGATTAAACGATGCGATTTCCCGAGCATGGAAT
1 CAAAA-GTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-CCGAGCATGGAAT
* ** ** * *
3497 GTTTGAAAAATTGCACAAAGGAATGGATCTTCTTTAATACTCTCAA-GAACCAAAGTTATAATAA
64 GTTCGAAAAATTGGTCAAAGGAATGGATAGTCTTGAATACT-TTAAGGAACCAAAG-T-T-ATAA
* * * * * * ** *
3561 AAGAACTTGTGAAATTTTGAAAAGTTTGAAAGTTAAAT-CATGAACCAAGAGAGAAA-ATATTCT
125 AAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTT-CGTCCAAGAACCAAGAGAGAAACA-ATTCT
* * * * *
3624 CATGCAAATAAATTTTAAATTCAAACAC
188 CACGTAAATAAGTTTTTAATTCAAAGAC
* * * * * * * *
3652 CAAAAGTTGTTTACCATATGACAAATTATTTTGATCAAATGATGCAATTTTCCGAGAATGCAATG
1 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA-TTTCCGAGCATGGAATG
** * ** *
3717 TTCGAAAAATTGGTTGAAGGAATGCATCTTCTTAAATACTATT-AGGAACCAAAGTTATAAAAGA
65 TTCGAAAAATTGGTCAAAGGAATGGATAGTCTTGAATACT-TTAAGGAACCAAAGTTATAAAAGA
** ** * * * ****
3781 ACTTTTAAATTTTTGAAAAGTTCGGAAGTTCATCCAAGAAATGGGAGAGAAACAATTCTCACGTA
129 ACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
3846 AATAAGTTTTTAATTCAAAGAC
194 AATAAGTTTTTAATTCAAAGAC
* *
3868 CAACAGTTGTTCACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATG
1 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC-CGAGCATGGAATG
* * *
3933 TTCGGAAAA-TGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCGAAGTTGTAAAAGA
65 TTCGAAAAATTGG-TCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGA
* * * ** *
3997 ACTCGTAAAAGTTTGACTAGTCCGTAAGTTCTTCTGAGAACCAAGAGTGAAACAATTCTCACGTA
129 ACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
*
4062 AATAAGTTTTTAATTTAAAGAC
194 AATAAGTTTTTAATTCAAAGAC
* * * *
4084 CAAAATTTGTTTGA-AAAATCACAAACTATTTAGACCAAAAGATGCGATTTTCGGAGCATGGAAT
1 CAAAAGTTGTTT-ACAAAATGACAAACTATTTAGACCAAATGATGCGA-TTTCCGAGCATGGAAT
* * **
4148 GTTC-AGAAAA-TGACTCAAAGGAATGGATAGTCTTGAATACTTTGAGGAACCAAAGTTATCGAA
64 GTTCGA-AAAATTG-GTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAA
* * * *
4211 GAACTCGTAAAAGTTCGACCAGTTCGTAAGTTCATCCTAGAACGACAAGAG-G-AACAATTCTCA
127 GAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAAC--CAAGAGAGAAACAATTCTCA
* * *
4274 CGTAAGTAGGTTTTTAATTCGAAGAC
190 CGTAAATAAGTTTTTAATTCAAAGAC
* * * * * * * * *
4300 TAAAAGTTGTTTACATAATGACAAAGTTTTTGGACCAAACGATACGATTCCCGAGCATGGAAAGT
1 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCGAGCATGGAATGT
* * * ** * **
4365 TCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAGTACTCTT-AGGAACTTAAGTTAAAAAAGTG
66 TCGAAAAATTGGTCAAAGGAATGGATAGTCTTGAATACT-TTAAGGAACCAAAGTTATAAAAGAA
** * * * * * *
4429 CTATTAAATGTTCCG-CAAGTACGAAAGTTCGTCCAAGAACCATGATAGAAACAATTCTCACGTA
130 CTCGTAAAAGTT-TGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
4493 AATAAGTTTTTAATTCAAAGA-
194 AATAAGTTTTTAATTCAAAGAC
* * * * *
4514 CAAAAATTGTTTAGAAAATGATAACCTATTTAGACCAAATGATGTC-ATTTCTCGGGCATGGAAT
1 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG-CGATTTC-CGAGCATGGAAT
** * * * * *
4578 GCTT-GAAAAATTGCACAAAGGAATGGATCA-CCTTTAATAGTTTAAGGAACCGAAGTTATAAAG
64 G-TTCGAAAAATTGGTCAAAGGAATGGAT-AGTCTTGAATACTTTAAGGAACCAAAGTTATAAAA
*
4641 GAACT-GATAAAAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTGTC
127 GAACTCG-T-AAAAGTTTGACAAGTTC-GTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* *
4704 ATGTAAAT-A-TTTTAAATTCAAAGAC
189 ACGTAAATAAGTTTTTAATTCAAAGAC
* * * * *
4729 GAAAAGTTGATTACGAAATGAAAAACTATTTAGACCAAACGATGCGATTTCC
1 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC
4781 CAAGCGTAGA
Statistics
Matches: 3762, Mismatches: 670, Indels: 263
0.80 0.14 0.06
Matches are distributed among these distances:
200 1 0.00
201 22 0.01
202 2 0.00
203 2 0.00
204 97 0.03
205 49 0.01
207 1 0.00
210 84 0.02
211 122 0.03
212 50 0.01
213 120 0.03
214 432 0.11
215 631 0.17
216 1617 0.43
217 236 0.06
218 32 0.01
219 260 0.07
220 4 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (215 bp):
CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCGAGCATGGAATGT
TCGAAAAATTGGTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
TCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA
TAAGTTTTTAATTCAAAGAC
Found at i:1668 original size:642 final size:647
Alignment explanation
Indices: 1--4814 Score: 4595
Period size: 642 Copynumber: 7.5 Consensus size: 647
* * * * * *
1 CAAAAGTTGGTTACGAAATGACAAACTATTTAGACCAAATAATGCTATTT-TCCGAGCATGGAAT
1 CAAAAGTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGGAGCATGGAAT
* * * * * * * *
65 GTT-TGAAAAATTGCACAGAGGAATGGATCGTCTTTAATACTCTCAA-GAACCAAAGTTATAATA
66 GTTCAG-AAAATGGCTCAAAGGAATGGATAGTCTTGAATACT-TTAAGGAACCGAAG-T-T-ATA
* ** * ** **
128 AAAGAACTTGTAAATTTTTGAAAAGTTTGTAAGTTAATCCAAGAACCAAGAGAGAAA-ATATTCT
126 AAAGAACTCGTAAAAGTTTGACAAGTCCGTAAGTTCGTCCAAGAA-CAAGAGAGAAACA-ATTCT
* * * * * * * *
192 CATGCAAATAAATTTTAAATTCAAACACCAAAAGTTGTTTACCATATGACAAACTATTTTGACCA
189 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * * * ** * *
257 AATGATGCAATTTTCCGAGAATGCAATGTTC-GAAAAATTGGTTGAAGGAATGCAT-GTTCTTAA
254 AAAGATGCGATTTCCCGAGCATGGAATGTTCAG-AAAATTGCTCAAAGGAATGGATAG-TCTTGA
* * * * ** * ** * *
320 ATACTATT-ACGAAACAAAGTTATAAAAGAACTTGTAAATTTTTGAAAAGTTCGGAAGTTCATCC
317 ATACT-TTGAGGAACCAAAGTTATTAAAGAACTCGTAAAAGTTCGACCAGTTCGAAAGTTCGTCC
***
384 AAGAACTGGGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
381 AAGAAC-ACAAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
*
449 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGCTCGAAAAA-TGG
445 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGG
* * ** * * *
513 CTC-AATTGAATGGATAGTCTTGAGTACTTTAAGGAACAAAAGTTGTAAAAGAACTCGTAAAAGT
510 -TCGAA-GGAATGGATCGTCTTGAGTACTTTAAGGAACCTAAGTTATAAAAGAACTAGTAAATGT
* * * * * *
577 TTGACTAGTCCGTAAGTTAATCCGAGAACCAAGAGTGAAACAATTCTCACGTAAATAAGTTTTTA
573 TTGACAAGTACGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
* *
642 ATTAAAAGAA
638 ATTCAAAGAC
* * *
652 CAAAATTTGTTTGCAAAATCACAAACTATTTAGACCAAAAGATGCGATTTC-CGGAGCATGGAAT
1 CAAAAGTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGGAGCATGGAAT
* * * **
716 GTTTAGAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTGAGGAACCAAAGTTATCGAAGA
66 GTTCAGAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGA
* * * * *
781 ACTCGTAAAAGTTCGACCAGTTCGTAAGTTCGTCCTAGAACCACA-AGAGGAACAATTCTCACGT
131 ACTCGTAAAAGTTTGACAAGTCCGTAAGTTCGTCCAAGAA-CA-AGAGAGAAACAATTCTCACGT
* * * * * * * * *
845 AAATAGGTTTTTAATTCGAAGACTAAAAGTTGTTTACATAATGACAAAGTTTTTGGACCGAATGA
194 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAAGA
* * * * * * * * *
910 TACTA-TTCCCGAGCATGGAAAGTTCAAAAAATTGGTCGAAGGAATGGATCGTCTTGAGTACTCT
259 TGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCAAAGGAATGGATAGTCTTGAATACTTT
* ** ** * ** * * *
974 CAGGAACTTAAGTTACAAAAGAGCTATTAAATGTTC--CGCAGTACAAAAGTTCGTCCAAG-A-A
324 GAGGAACCAAAGTTATTAAAGAACTCGTAAAAGTTCGAC-CAGTTCGAAAGTTCGTCCAAGAACA
*
1035 C-AGTGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
388 CAAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* * * *
1099 CAAACTATTTAGACCAAATGATGCAATTTCTCGAGCATGGAATGTTCGGAAAA-TGGCTCAAATG
453 CAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGG-TCGAAGG
* * * * * *
1163 AATGGATAGTCTTGAGTACTTTAAGGAACCGAAGTTGTAAAAGAACTCGTAAAAGTTTGACTAGT
517 AATGGATCGTCTTGAGTACTTTAAGGAACCTAAGTTATAAAAGAACTAGTAAATGTTTGACAAGT
* * * *** * * *
1228 CCGTAAGTTCGTTTGAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTTTATAATTTAAAGA
582 ACGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
1293 C
647 C
* * * * *
1294 CAAAATTTGTTTGCAAAATCACAAACTATTTAGATCAAAAGATGAGATTT-TCGGAGCATGGAAT
1 CAAAAGTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGGAGCATGGAAT
* *
1358 GTTCAGAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTGAGGAACCGAAGTTGTAAAAGA
66 GTTCAGAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGA
* ***
1423 ACTCGTAAAAGTTTGACTAGTCCGTAAGTTCGTTTGAGAA-AAGAGAGAAACAATTCTCACGTAA
131 ACTCGTAAAAGTTTGACAAGTCCGTAAGTTCGTCCAAGAACAAGAGAGAAACAATTCTCACGTAA
* ** * * *
1487 ATAAGTTTTTAATTTAAAGACCAAATTTTGTTTGCAAAATCACAAACTATTTAGACCAAAAGATA
196 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAAGATG
* * * * **
1552 CGATTTTCGGAGCATGGAATGTTCAGAAAATAGCACAAAGGAATGGATAGTCTTGAACGCTTTGA
261 CGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCAAAGGAATGGATAGTCTTGAATACTTTGA
* * * *
1617 GTAACCAAAGTTATTGAAGAACTCGTAAAAGTTCGACCAGTTCGTAAGTTCGTCCTAGAACCACA
326 GGAACCAAAGTTATTAAAGAACTCGTAAAAGTTCGACCAGTTCGAAAGTTCGTCCAAGAA-CACA
* * * * *
1682 AGAGGAACAATTCTCACGTAAATAGGTTTTTAATTCGAAGACTAAAAGTTGTTTACATAATGACA
390 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACA
* * * * * * * *
1747 AAGTTTTTGGACCGAATGATACGA-TTCCCGAGCATGGAAAGTTCAAAAAATTGGTCGAAGGAAT
455 AACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAAT
* * * * * * *
1811 GGATCGTCTTGAGTACTCTCAGGAACTTAAGTTACAAAAGAGCTATTAAATGTTCCG-CAAGTAC
520 GGATCGTCTTGAGTACTTTAAGGAACCTAAGTTATAAAAGAACTAGTAAATGTT-TGACAAGTAC
* * * * *
1875 AAAAGTACGTCCAAG-A--AA-AGTGAAACAATTCTCACGTAAATAAGTTTTTATTTCAAAGAC
584 GAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* *
1935 CAAAAGTTGTTTACAAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGAAA
1 CAAAAGTTGTTTGC-AAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGGAGCATGGAA
* *
1999 TGTTC-GAAAAATGGCTCAAATGAATGGATAGTCTTGAGTACTTTAAGGAACC---------AAA
65 TGTTCAG-AAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCGAAGTTATAAAA
* * * * *
2054 G---TTGTAAAAGTTTGACTAGTCCGTAAGTTCATCCGAGAAACAAGAGAGAAACAATTCACACG
129 GAACTCGTAAAAGTTTGACAAGTCCGTAAGTTCGTCCAAG-AACAAGAGAGAAACAATTCTCACG
* * * * *
2116 TAAATAAGTTTTTAATTTAAAGGCCAAAATTTGTTTGCAAAATCACAAACTATTTAGACCAAAAG
193 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAAG
* *
2181 ATGCGATTTCCGGAGCATGGAATGTTCAGAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTT
258 ATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCAAAGGAATGGATAGTCTTGAATACTT
* * *
2246 TGAGGAACCAAAGTTA-T-CAGAACTCGTAAAAGTTCGACCAGTTCGTAAGTTCGTCCTAGAACC
323 TGAGGAACCAAAGTTATTAAAGAACTCGTAAAAGTTCGACCAGTTCGAAAGTTCGTCCAAGAA-C
* * * * * *
2309 ACAAGAGGAACAATTTTCACGTAAATAGGTTTTTAATTCGAAGACTAAAAGTTGTTTACATAATG
387 ACAAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG
* * * * ** * * * *
2374 ACAAAGTTTTTGGACCGAACAATACGA-TTCCCGAGCATGGAAAGTTCGAAAAATTGGTCAAAGG
452 ACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGGTCGAAGG
* * * * * *
2438 AATGGATCGTCTTGAGTACTTTCAGGAACTTAAGTTACAAAAGAGCTAGTAAATGTTCCG-CATG
517 AATGGATCGTCTTGAGTACTTTAAGGAACCTAAGTTATAAAAGAACTAGTAAATGTT-TGACAAG
*
2502 TACGAAAGTTCATCCAAGAACCATGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
581 TACGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
2567 AC
646 AC
* *
2569 CGAAAA-TTGTTTAG-AAAATGATAACCTATTTAGACCAAATGATGTC-ATTTCTCGG-GCATGG
1 C-AAAAGTTGTTT-GCAAAATGACAAACTATTTAGACCAAATGATG-CGATTTCTCGGAGCATGG
* * * * * *
2630 AATGCTTGA-AAAATAGCACAAAGGAATGGATCA-CCTTTAATAGTTTAAGGAACCGAAGTTATA
63 AATG-TTCAGAAAATGGCTCAAAGGAATGGAT-AGTCTTGAATACTTTAAGGAACCGAAGTTATA
* **
2693 AAGGAACT-GATAAAAAGTTTGACAAGTTTAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATT
126 AAAGAACTCG-T-AAAAGTTTGACAAG-TCCGTAAGTTCGTCCAAGAA-CAAGAGAGAAACAATT
* * * * *
2756 GTCATGTAAAT-A-TTTTTAATTCAAAGACGAAAAGTTGATTACAAAATGAAAAACTATTTAGAC
187 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGAC
* * * * ** * *
2819 CAAACGATGCGATTTCCCAAGCGTAGAATGTTGGGAAAATTGCTCGAAGGAATGGATCGTCTTGA
252 CAAAAGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCAAAGGAATGGATAGTCTTGA
* ** * * * * *
2884 ATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAAAGCTT-GACAAGTTTGAAAGTTAAG-C
317 ATACTTTGAGGAACCAAAGTTATTAAAGAACTCGTAAAAG-TTCGACCAGTTCGAAAGTT-CGTC
* * * * * *
2947 CAAGAACAAAGAGAGAAACAGTTCTCACGTAAATAAGTTTTTAATACATAGAGCAAAAGTTGGTT
380 CAAGAACACA-AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * *
3012 ACGAAATGACAAACTATTTAGACCAAATAATGCGATTT-TCCGAGCATTGAATGTTCGAAAAATT
444 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCT-CGAGCATGGAATGTTCGAAAAATT
* * * * * *
3076 GGTCGAAGG-ATAGGATCGGCTTGAATAATTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
508 GGTCGAAGGAAT-GGATCGTCTTGAGTACTTTAAGGAACCTAAGTTATAAAAGAACTAGTAAATG
** * * *
3140 TTTGACAAGTTTGGAAGTTCATCCAAAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTC
572 TTTGACAAGTACGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
3205 AAGTCAAAGAC
637 AATTCAAAGAC
* * * *** *
3216 CAAAAGTTGTTTACAAAATTAAAAAAAC-ATTTAGAATGAATGATGCGATTTAC-C-GAGCCTGG
1 CAAAAGTTGTTTGCAAAA-T-GACAAACTATTTAGACCAAATGATGCGATTT-CTCGGAGCATGG
* * * * * * * *
3278 AATGCTC-GAAAAATTAG-TCGAAGGAATGGGTCA-TCTTTAATGCTCTT-AGAAACCAAAGTTA
63 AATGTTCAG-AAAA-TGGCTCAAAGGAATGGAT-AGTCTTGAATACT-TTAAGGAACCGAAGTTA
* *
3339 TAAAAGAACTGGTAAATA-TTTGACAAGTTC-TGAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
124 TAAAAGAACTCGTAAA-AGTTTGACAAGTCCGT-AAGTTCGTCCAAGAA-CAAGAGAGAAACAAT
* * **
3402 CCTCATGTAAATCTGTTTTTAATTCAAAGACCAAAAGGTT-TTTACAAAATGACAAACTATTTAG
186 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA-GTTGTTTACAAAATGACAAACTATTTAG
** * * * **
3466 ATTAAACGATGCGATTTCCCGAGCATGGAATGTT-TGAAAAATTGCACAAAGGAATGGATCTTCT
250 ACCAAAAGATGCGATTTCCCGAGCATGGAATGTTCAG-AAAATTGCTCAAAGGAATGGATAGTCT
* * * * * * * * ** *
3530 TTAATACTCTCAAGAACCAAAGTTATAATAAAAGAACTTGTGAAATTTTGAAAAGTTTGAAAGTT
314 TGAATACTTTGAGGAACCAAAGTTAT--T-AAAGAACTCGTAAAAGTTCGACCAGTTCGAAAGTT
** * * * * * * *
3595 AAAT-CATGAAC-CAAGAGAGAAAATATTCTCATGCAAATAAATTTTAAATTCAAACACCAAAAG
376 -CGTCCAAGAACACAAGAGA-AACA-ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* * * * * * * *
3658 TTGTTTACCATATGACAAATTATTTTGATCAAATGATGCAATTT-TCCGAGAATGCAATGTTCGA
438 TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCT-CGAGCATGGAATGTTCGA
* * * * * * **
3722 AAAATTGGTTGAAGGAATGCATCTTCTTAAATACTATT-AGGAACCAAAGTTATAAAAGAACTTT
502 AAAATTGGTCGAAGGAATGGATCGTCTTGAGTACT-TTAAGGAACCTAAGTTATAAAAGAACTAG
* * * * ****
3786 TAAATTTTTGAAAAGTTCGGAAGTTCATCCAAGAAATGGGAGAGAAACAATTCTCACGTAAATAA
566 TAAATGTTTGACAAGTACGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
3851 GTTTTTAATTCAAAGAC
631 GTTTTTAATTCAAAGAC
* **
3868 CAACAGTTGTTCACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAAT
1 CAAAAGTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGGAGCATGGAAT
* *
3932 GTTCGGAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCGAAGTTGTAAAAGA
66 GTTCAGAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGA
* * ** *
3997 ACTCGTAAAAGTTTGACTAGTCCGTAAGTTCTTCTGAGAACCAAGAGTGAAACAATTCTCACGTA
131 ACTCGTAAAAGTTTGACAAGTCCGTAAGTTCGTCCAAGAA-CAAGAGAGAAACAATTCTCACGTA
* * *
4062 AATAAGTTTTTAATTTAAAGACCAAAATTTGTTTGA-AAAATCACAAACTATTTAGACCAAAAGA
195 AATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT-ACAAAATGACAAACTATTTAGACCAAAAGA
* *
4126 TGCGATTTTCGGAGCATGGAATGTTCAGAAAA-TGACTCAAAGGAATGGATAGTCTTGAATACTT
259 TGCGATTTCCCGAGCATGGAATGTTCAGAAAATTG-CTCAAAGGAATGGATAGTCTTGAATACTT
** * * *
4190 TGAGGAACCAAAGTTATCGAAGAACTCGTAAAAGTTCGACCAGTTCGTAAGTTCATCCTAGAACG
323 TGAGGAACCAAAGTTATTAAAGAACTCGTAAAAGTTCGACCAGTTCGAAAGTTCGTCCAAGAAC-
* * * * * *
4255 ACAAGAGGAACAATTCTCACGTAAGTAGGTTTTTAATTCGAAGACTAAAAGTTGTTTACATAATG
387 ACAAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG
* * * * * * *
4320 ACAAAGTTTTTGGACCAAACGATACGA-TTCCCGAGCATGGAAAGTTCGAAAAATTGGTCGAAGG
452 ACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGGTCGAAGG
* * ** * *
4384 AATGGATCGTCTTGAGTACTCTT-AGGAACTTAAGTTAAAAAAGTGCTATTAAATGTTCCG-CAA
517 AATGGATCGTCTTGAGTACT-TTAAGGAACCTAAGTTATAAAAGAACTAGTAAATGTT-TGACAA
* * *
4447 GTACGAAAGTTCGTCCAAGAACCATGATAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
580 GTACGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
4512 GA-
645 GAC
* * *
4514 CAAAAATTGTTTAG-AAAATGATAACCTATTTAGACCAAATGATGTC-ATTTCTCGG-GCATGGA
1 CAAAAGTTGTTT-GCAAAATGACAAACTATTTAGACCAAATGATG-CGATTTCTCGGAGCATGGA
* * * * * *
4576 ATGCTTGA-AAAATTGCACAAAGGAATGGATCA-CCTTTAATAGTTTAAGGAACCGAAGTTATAA
64 ATG-TTCAGAAAATGGCTCAAAGGAATGGAT-AGTCTTGAATACTTTAAGGAACCGAAGTTATAA
* * *
4639 AGGAACT-GATAAAAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTG
127 AAGAACTCG-T-AAAAGTTTGACAAG-TCCGTAAGTTCGTCCAAGAA-CAAGAGAGAAACAATTC
* * * * * *
4702 TCATGTAAAT-A-TTTTAAATTCAAAGACGAAAAGTTGATTACGAAATGAAAAACTATTTAGACC
188 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACC
* * * * ** *
4765 AAACGATGCGATTTCCCAAGCGTAGAATGTTGGGAAAATTGCTCGAAGGA
253 AAAAGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCAAAGGA
Statistics
Matches: 3489, Mismatches: 557, Indels: 240
0.81 0.13 0.06
Matches are distributed among these distances:
630 277 0.08
631 4 0.00
632 157 0.04
633 85 0.02
634 52 0.01
635 4 0.00
639 1 0.00
640 74 0.02
641 121 0.03
642 505 0.14
643 6 0.00
644 120 0.03
645 179 0.05
646 369 0.11
647 475 0.14
648 283 0.08
649 132 0.04
650 33 0.01
651 349 0.10
652 259 0.07
653 4 0.00
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (647 bp):
CAAAAGTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGGAGCATGGAAT
GTTCAGAAAATGGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGA
ACTCGTAAAAGTTTGACAAGTCCGTAAGTTCGTCCAAGAACAAGAGAGAAACAATTCTCACGTAA
ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAAGATG
CGATTTCCCGAGCATGGAATGTTCAGAAAATTGCTCAAAGGAATGGATAGTCTTGAATACTTTGA
GGAACCAAAGTTATTAAAGAACTCGTAAAAGTTCGACCAGTTCGAAAGTTCGTCCAAGAACACAA
GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA
ACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATG
GATCGTCTTGAGTACTTTAAGGAACCTAAGTTATAAAAGAACTAGTAAATGTTTGACAAGTACGA
AAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
Done.