Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013924.1 Kokia drynarioides strain JFW-HI SEQ_128954, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5554
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.36


Found at i:3970 original size:6 final size:7

Alignment explanation


    Indices: 3953--3989  Score: 67
    Period size: 7  Copynumber: 5.4  Consensus size: 7

       3943 TTACTAAATT

                   
       3953 AAAAAAG
          1 AAAAAAG

                   
       3960 AAAAAAG
          1 AAAAAAG

                   
       3967 AAAAAAG
          1 AAAAAAG

                   
       3974 AAAAAAG
          1 AAAAAAG

                   
       3981 -AAAAAG
          1 AAAAAAG

               
       3987 AAA
          1 AAA

       3990 CTAATGATAG


Statistics
Matches: 29,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   6    6  0.21
   7   23  0.79

ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00


Consensus pattern (7 bp):   
AAAAAAG

Done.