Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013933.1 Kokia drynarioides strain JFW-HI SEQ_128963, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81255
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33
Warning! 22 characters in sequence are not A, C, G, or T
Found at i:6442 original size:41 final size:41
Alignment explanation
Indices: 6397--6480 Score: 141
Period size: 41 Copynumber: 2.0 Consensus size: 41
6387 GCATGATACT
*
6397 AACATTGATGAAGATGCAGTTTTAAGTTGTTCATAGCTGTA
1 AACATTGATGAAGATGCAGTTTTAAGTTGTTCATAGCTATA
* *
6438 AACATTGATGAAGTTGCAGTTTTAAGTTGTTTATAGCTATA
1 AACATTGATGAAGATGCAGTTTTAAGTTGTTCATAGCTATA
6479 AA
1 AA
6481 TTGTCAGCGC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.38
Consensus pattern (41 bp):
AACATTGATGAAGATGCAGTTTTAAGTTGTTCATAGCTATA
Found at i:9232 original size:34 final size:34
Alignment explanation
Indices: 9175--9240 Score: 80
Period size: 34 Copynumber: 1.9 Consensus size: 34
9165 ATATATATGG
** *
9175 AAATGCAATGACAATGTAGATGC-AGCGACAATAA
1 AAATGCAATGACAATAAAAATGCAAG-GACAATAA
*
9209 AAATGCAGTGACAATAAAAATGCAAGGACAAT
1 AAATGCAATGACAATAAAAATGCAAGGACAAT
9241 TATACTATGG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 25 0.93
35 2 0.07
ACGTcount: A:0.50, C:0.14, G:0.20, T:0.17
Consensus pattern (34 bp):
AAATGCAATGACAATAAAAATGCAAGGACAATAA
Found at i:9240 original size:17 final size:17
Alignment explanation
Indices: 9175--9232 Score: 71
Period size: 17 Copynumber: 3.4 Consensus size: 17
9165 ATATATATGG
* **
9175 AAATGCAATGACAATGT
1 AAATGCAGTGACAATAA
* *
9192 AGATGCAGCGACAATAA
1 AAATGCAGTGACAATAA
9209 AAATGCAGTGACAATAA
1 AAATGCAGTGACAATAA
9226 AAATGCA
1 AAATGCA
9233 AGGACAATTA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 34 1.00
ACGTcount: A:0.50, C:0.14, G:0.19, T:0.17
Consensus pattern (17 bp):
AAATGCAGTGACAATAA
Found at i:11416 original size:16 final size:16
Alignment explanation
Indices: 11395--11425 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
11385 ATAATGTGAA
11395 AATAAAGATAAAATGT
1 AATAAAGATAAAATGT
*
11411 AATAAAGGTAAAATG
1 AATAAAGATAAAATG
11426 GGATCCACAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.00, G:0.16, T:0.23
Consensus pattern (16 bp):
AATAAAGATAAAATGT
Found at i:11987 original size:245 final size:245
Alignment explanation
Indices: 11557--12039 Score: 842
Period size: 245 Copynumber: 2.0 Consensus size: 245
11547 GATCTATGAC
*
11557 TTTAGTATGCACACTAACCACACCATCCAGTGCTGGCAATGCAACACATTTAAGAACAAGTGGAC
1 TTTAGTATGCACACTAACCACACCATCCAGTGCTGGCAATGCAACACACTTAAGAACAAGTGGAC
* * *
11622 CAAATTCCTTCAATCCCAAAGCAACTTCCATTATCTTGCTTGTTAGTTTAAACTGTCACTGCAGC
66 AAAATTCCATCAATCCCAAAGCAACTTCCATTATCTTGCTTGTTAGTTTAAACTGTCACTGCACC
* * *
11687 TTCTAGTGACTATGACTGCAATAACACTTTCGTGCTAAAATCATTCAAACCCAAAGATTAAACAG
131 TTCCAATGACTATGACTACAATAACACTTTCGTGCTAAAATCATTCAAACCCAAAGATTAAACAG
*
11752 TAAAAGAAAGCTTGAATAAGATATCATTTAGTCTAATAATCAATATATCA
196 TAAAAGAAAGCTTGAATAAGATATCATTTAGTATAATAATCAATATATCA
* *
11802 TTTAGTATGCACACTAACCACACCTTCCAGTGTTGGCAATGCAACACACTTAAGAACAAGTGGAC
1 TTTAGTATGCACACTAACCACACCATCCAGTGCTGGCAATGCAACACACTTAAGAACAAGTGGAC
*
11867 AAAATTCCATCAATCCCAAAGCAACTT-CAGTTGTCTTGCTTGTTAGTTTAAACTGTCACTGCAC
66 AAAATTCCATCAATCCCAAAGCAACTTCCA-TTATCTTGCTTGTTAGTTTAAACTGTCACTGCAC
*
11931 CTTCCAATGACTATGACTACAATAACACTTTCGTGCTAAAATCATTCAAACCCAAAGATTAAATA
130 CTTCCAATGACTATGACTACAATAACACTTTCGTGCTAAAATCATTCAAACCCAAAGATTAAACA
11996 GTAAAAGAAAGCTTGAATAAGATATCATTTAGTATAATAATCAA
195 GTAAAAGAAAGCTTGAATAAGATATCATTTAGTATAATAATCAA
12040 GAGTACTTCC
Statistics
Matches: 225, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
244 2 0.01
245 223 0.99
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.28
Consensus pattern (245 bp):
TTTAGTATGCACACTAACCACACCATCCAGTGCTGGCAATGCAACACACTTAAGAACAAGTGGAC
AAAATTCCATCAATCCCAAAGCAACTTCCATTATCTTGCTTGTTAGTTTAAACTGTCACTGCACC
TTCCAATGACTATGACTACAATAACACTTTCGTGCTAAAATCATTCAAACCCAAAGATTAAACAG
TAAAAGAAAGCTTGAATAAGATATCATTTAGTATAATAATCAATATATCA
Found at i:12584 original size:37 final size:37
Alignment explanation
Indices: 12543--12631 Score: 151
Period size: 37 Copynumber: 2.4 Consensus size: 37
12533 AAAATATTCC
*
12543 TGCGGTGACAGTTTTGGGTGTAATCTGGAAGTGCTCA
1 TGCGGTGACAGTTTTGGGTGCAATCTGGAAGTGCTCA
*
12580 TGCGGTAACAGTTTTGGGTGCAATCTGGAAGTGCTCA
1 TGCGGTGACAGTTTTGGGTGCAATCTGGAAGTGCTCA
*
12617 TGTGGTGACAGTTTT
1 TGCGGTGACAGTTTT
12632 AGGCACAAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.19, C:0.13, G:0.34, T:0.34
Consensus pattern (37 bp):
TGCGGTGACAGTTTTGGGTGCAATCTGGAAGTGCTCA
Found at i:14283 original size:14 final size:14
Alignment explanation
Indices: 14264--14342 Score: 70
Period size: 14 Copynumber: 5.7 Consensus size: 14
14254 CAAATTCGAC
14264 GGTCAACAATCAAA
1 GGTCAACAATCAAA
* *
14278 GGTCAA-AGTCAAC
1 GGTCAACAATCAAA
* *
14291 GGTCAACAGTTAAA
1 GGTCAACAATCAAA
* *
14305 GGTCAACAGTCAAC
1 GGTCAACAATCAAA
* * *
14319 GATAAATAATCAAA
1 GGTCAACAATCAAA
14333 GGTCAACAAT
1 GGTCAACAAT
14343 TCGGTTAACA
Statistics
Matches: 50, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
13 11 0.22
14 39 0.78
ACGTcount: A:0.46, C:0.19, G:0.18, T:0.18
Consensus pattern (14 bp):
GGTCAACAATCAAA
Found at i:14284 original size:27 final size:27
Alignment explanation
Indices: 14247--14338 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 27
14237 AAAGTAAAAG
* *
14247 TCAAA-GTCAAATTCGACGGTCAACAA
1 TCAAAGGTCAAAGTCAACGGTCAACAA
*
14273 TCAAAGGTCAAAGTCAACGGTCAACAG
1 TCAAAGGTCAAAGTCAACGGTCAACAA
* * * *
14300 TTAAAGGTCAACAGTCAACGATAAATAA
1 TCAAAGGTCAA-AGTCAACGGTCAACAA
14328 TCAAAGGTCAA
1 TCAAAGGTCAA
14339 CAATTCGGTT
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
26 5 0.09
27 28 0.51
28 22 0.40
ACGTcount: A:0.45, C:0.20, G:0.17, T:0.18
Consensus pattern (27 bp):
TCAAAGGTCAAAGTCAACGGTCAACAA
Found at i:14333 original size:28 final size:28
Alignment explanation
Indices: 14268--14340 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 28
14258 TTCGACGGTC
* *
14268 AACAATCAAAGGTCAA-AGTCAACGGTC
1 AACAATCAAAGGTCAACAGTCAACGATA
* *
14295 AACAGTTAAAGGTCAACAGTCAACGATA
1 AACAATCAAAGGTCAACAGTCAACGATA
*
14323 AATAATCAAAGGTCAACA
1 AACAATCAAAGGTCAACA
14341 ATTCGGTTAA
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
27 14 0.37
28 24 0.63
ACGTcount: A:0.48, C:0.19, G:0.16, T:0.16
Consensus pattern (28 bp):
AACAATCAAAGGTCAACAGTCAACGATA
Found at i:15448 original size:23 final size:23
Alignment explanation
Indices: 15429--15535 Score: 151
Period size: 23 Copynumber: 4.7 Consensus size: 23
15419 TTCATTTGCA
15429 CATAAATCACATTAATATTTAAG
1 CATAAATCACATTAATATTTAAG
15452 CATAAATCACATTAATATTTAAG
1 CATAAATCACATTAATATTTAAG
* * * *
15475 TATAAATCATATTGACATTTAAG
1 CATAAATCACATTAATATTTAAG
* *
15498 CACAAACCACATTAATATTTAAG
1 CATAAATCACATTAATATTTAAG
*
15521 CACAAATCACATTAA
1 CATAAATCACATTAA
15536 CTTTTAACAC
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 73 1.00
ACGTcount: A:0.48, C:0.16, G:0.05, T:0.32
Consensus pattern (23 bp):
CATAAATCACATTAATATTTAAG
Found at i:15823 original size:36 final size:36
Alignment explanation
Indices: 15783--15856 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
15773 TTCATTGTCA
*
15783 CATGGCATGAATAACATACCCACATATTTACTATCT
1 CATGGCATGAATAACATACCCACATATTTACAATCT
*
15819 CATGGCATGAATAACATACCCTCATATTTACAATCT
1 CATGGCATGAATAACATACCCACATATTTACAATCT
15855 CA
1 CA
15857 GTCTTTACTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.36, C:0.26, G:0.08, T:0.30
Consensus pattern (36 bp):
CATGGCATGAATAACATACCCACATATTTACAATCT
Found at i:21619 original size:17 final size:18
Alignment explanation
Indices: 21599--21636 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
21589 TAGAGCAAAT
21599 AAAATGCAGA-GACAA-TA
1 AAAATGCA-ATGACAATTA
21616 AAAATGCAATGACAATTA
1 AAAATGCAATGACAATTA
21634 AAA
1 AAA
21637 GAAATGCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 1 0.05
17 13 0.68
18 5 0.26
ACGTcount: A:0.61, C:0.11, G:0.13, T:0.16
Consensus pattern (18 bp):
AAAATGCAATGACAATTA
Found at i:22023 original size:3 final size:3
Alignment explanation
Indices: 22015--22071 Score: 55
Period size: 3 Copynumber: 19.0 Consensus size: 3
22005 CGGAGTAACG
* *
22015 TCT TCT TCT TTT TCT TCAT TC- TCT TCT TTT TCT TCT TCT T-T TCTT
1 TCT TCT TCT TCT TCT TC-T TCT TCT TCT TCT TCT TCT TCT TCT TC-T
*
22060 TCT CCT TCT TCT
1 TCT TCT TCT TCT
22072 ATCTCAATAC
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
2 4 0.09
3 34 0.77
4 6 0.14
ACGTcount: A:0.02, C:0.30, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:22041 original size:18 final size:17
Alignment explanation
Indices: 22018--22071 Score: 72
Period size: 18 Copynumber: 3.1 Consensus size: 17
22008 AGTAACGTCT
22018 TCTTCTTTTTCTTCATTC
1 TCTTCTTTTTCTTC-TTC
22036 TCTTCTTTTTCTTCTTC
1 TCTTCTTTTTCTTCTTC
* *
22053 TTTTCTTTCTCCTTCTTC
1 TCTTCTTT-TTCTTCTTC
22071 T
1 T
22072 ATCTCAATAC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.30
18 23 0.70
ACGTcount: A:0.02, C:0.30, G:0.00, T:0.69
Consensus pattern (17 bp):
TCTTCTTTTTCTTCTTC
Found at i:23406 original size:100 final size:99
Alignment explanation
Indices: 23233--23431 Score: 380
Period size: 100 Copynumber: 2.0 Consensus size: 99
23223 CATCCCAAAC
*
23233 GAGAAATTGTTTTGGTAACCTACTTCCCTAATGTCAGATGCGGGGACACCAAAATCCTTGTTCAG
1 GAGAAATTGTTTTGGTAACCTACTTCCCTAATGTCAGATGCGGGGACACCAAAATCCTTCTTCAG
23298 GATGACAGTTGCTTTTCATATCACCTCATGGTAA
66 GATGACAGTTGCTTTTCATATCACCTCATGGTAA
23332 NGAGAAATTGTTTTGGTAACCTACTTCCCTAATGTCAGATGCGGGGACACCAAAATCCTTCTTCA
1 -GAGAAATTGTTTTGGTAACCTACTTCCCTAATGTCAGATGCGGGGACACCAAAATCCTTCTTCA
23397 GGATGACAGTTGCTTTTCATATCACCTCATGGTAA
65 GGATGACAGTTGCTTTTCATATCACCTCATGGTAA
23432 CGGTTCTTCG
Statistics
Matches: 98, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
100 98 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (99 bp):
GAGAAATTGTTTTGGTAACCTACTTCCCTAATGTCAGATGCGGGGACACCAAAATCCTTCTTCAG
GATGACAGTTGCTTTTCATATCACCTCATGGTAA
Found at i:36939 original size:9 final size:9
Alignment explanation
Indices: 36925--36952 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
36915 CTGCCTTTGC
36925 TTTCTTCTT
1 TTTCTTCTT
36934 TTTCTTCTT
1 TTTCTTCTT
36943 TTTCTTCTT
1 TTTCTTCTT
36952 T
1 T
36953 GGGCGCTCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTCTTCTT
Found at i:52861 original size:23 final size:23
Alignment explanation
Indices: 52701--52854 Score: 236
Period size: 23 Copynumber: 6.7 Consensus size: 23
52691 AGTTCATTTA
52701 CATATAATCACATTAATATTTAAG
1 CATA-AATCACATTAATATTTAAG
*
52725 CATAAATCACATTAACATTTAAG
1 CATAAATCACATTAATATTTAAG
52748 CATAAATCACATTAATATTTAAG
1 CATAAATCACATTAATATTTAAG
* * *
52771 CATAAATCATATTAACATCTAAG
1 CATAAATCACATTAATATTTAAG
* *
52794 CACAAATCACATTAATATTTCAG
1 CATAAATCACATTAATATTTAAG
*
52817 CACAAATCACATTAATATTTAAG
1 CATAAATCACATTAATATTTAAG
52840 CATAAATCACATTAA
1 CATAAATCACATTAA
52855 CTTTTAACAC
Statistics
Matches: 118, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
23 114 0.97
24 4 0.03
ACGTcount: A:0.47, C:0.17, G:0.04, T:0.32
Consensus pattern (23 bp):
CATAAATCACATTAATATTTAAG
Found at i:68881 original size:26 final size:26
Alignment explanation
Indices: 68845--68904 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
68835 AACATGGGAC
68845 ATAAAAAATTAACATTAGAATATAAA
1 ATAAAAAATTAACATTAGAATATAAA
* *
68871 ATAAGAAATTAACATTAGAATTTAAA
1 ATAAAAAATTAACATTAGAATATAAA
*
68897 ACAAAAAA
1 ATAAAAAA
68905 AAAACATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.25
Consensus pattern (26 bp):
ATAAAAAATTAACATTAGAATATAAA
Found at i:68910 original size:26 final size:26
Alignment explanation
Indices: 68855--68912 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
68845 ATAAAAAATT
* * **
68855 AACATTAGAATATAAAATAAGAAATT
1 AACATTAGAATATAAAACAAAAAAAA
*
68881 AACATTAGAATTTAAAACAAAAAAAA
1 AACATTAGAATATAAAACAAAAAAAA
68907 AACATT
1 AACATT
68913 TTAAATCTTA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.64, C:0.07, G:0.05, T:0.24
Consensus pattern (26 bp):
AACATTAGAATATAAAACAAAAAAAA
Found at i:72200 original size:13 final size:13
Alignment explanation
Indices: 72184--72222 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
72174 TTATGAAGGA
72184 TATTAATCTAAAC
1 TATTAATCTAAAC
*
72197 TATTAAACTAAAC
1 TATTAATCTAAAC
72210 TAAATTAATCTAA
1 T--ATTAATCTAA
72223 GCTGAAGATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 13 0.59
15 9 0.41
ACGTcount: A:0.51, C:0.13, G:0.00, T:0.36
Consensus pattern (13 bp):
TATTAATCTAAAC
Found at i:76783 original size:80 final size:81
Alignment explanation
Indices: 76648--76802 Score: 251
Period size: 80 Copynumber: 1.9 Consensus size: 81
76638 TTTCACGTGG
* * *
76648 AAATAAGTTGTAAAAAATTTATTGATGTGACATAAAATAATTGAATGGAATCATATATGAGGTGA
1 AAATAAGTTGTAAAAAATTTATTGATATGACATAAAATAATTGAATGGAACCATATATGAGATGA
76713 TGGGAGTGGTACGTTA
66 TGGGAGTGGTACGTTA
*
76729 AAATAAGTTGTAAAAAA-TTATTGATATGACATAAAATAATTTG-ATGGAACCATATATGAGATT
1 AAATAAGTTGTAAAAAATTTATTGATATGACATAAAATAA-TTGAATGGAACCATATATGAGATG
76792 ATGGGAGTGGT
65 ATGGGAGTGGT
76803 CGGTAGAATA
Statistics
Matches: 69, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
80 49 0.71
81 20 0.29
ACGTcount: A:0.42, C:0.04, G:0.22, T:0.32
Consensus pattern (81 bp):
AAATAAGTTGTAAAAAATTTATTGATATGACATAAAATAATTGAATGGAACCATATATGAGATGA
TGGGAGTGGTACGTTA
Found at i:76867 original size:82 final size:82
Alignment explanation
Indices: 76758--76911 Score: 231
Period size: 82 Copynumber: 1.9 Consensus size: 82
76748 ATTGATATGA
* * * *
76758 CATAAAATAATTTGATGGAACCATATATGAGATTATGGGAGTGG-TCGGTAGAATAATTTCTCAT
1 CATAAAATAATTAGATGGAACCATATATGAGATGATGAGAATGGTTC-GTAGAATAATTTCTCAT
76822 TATTATCTATTAATGTGG
65 TATTATCTATTAATGTGG
*
76840 CATAAAATAATTAGAT-GATACCATATATGAGGTGATGAGAATGGTTCGTAGAATAATTTCTCAT
1 CATAAAATAATTAGATGGA-ACCATATATGAGATGATGAGAATGGTTCGTAGAATAATTTCTCAT
76904 TATTATCT
65 TATTATCT
76912 TTTGACCATT
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
81 2 0.03
82 61 0.94
83 2 0.03
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.36
Consensus pattern (82 bp):
CATAAAATAATTAGATGGAACCATATATGAGATGATGAGAATGGTTCGTAGAATAATTTCTCATT
ATTATCTATTAATGTGG
Found at i:79858 original size:6 final size:6
Alignment explanation
Indices: 79844--79886 Score: 77
Period size: 6 Copynumber: 7.2 Consensus size: 6
79834 TGAGTTTGGT
*
79844 CTCCTA CTCCCA CTCCCA CTCCCA CTCCCA CTCCCA CTCCCA C
1 CTCCCA CTCCCA CTCCCA CTCCCA CTCCCA CTCCCA CTCCCA C
79887 CGTAGAATAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.16, C:0.65, G:0.00, T:0.19
Consensus pattern (6 bp):
CTCCCA
Done.